Wall clock time and date at job start Wed Apr 1 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00266 * 2 1 4 4 C 1.50706 * 109.47016 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00020 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99702 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99931 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47155 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.46946 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00042 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99779 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99761 * 184.75903 * 11 9 8 13 13 C 1.52991 * 109.52482 * 301.07550 * 12 11 9 14 14 O 1.42900 * 109.47396 * 304.84043 * 13 12 11 15 15 C 1.53353 * 109.47639 * 61.37588 * 12 11 9 16 16 C 1.53043 * 109.61163 * 58.54454 * 15 12 11 17 17 C 1.53197 * 109.30657 * 61.37557 * 16 15 12 18 18 N 1.46927 * 108.77675 * 305.36567 * 17 16 15 19 19 C 1.36938 * 120.62858 * 233.58681 * 18 17 16 20 20 H 1.07999 * 119.99581 * 151.43192 * 19 18 17 21 21 C 1.38817 * 120.00295 * 331.43455 * 19 18 17 22 22 N 1.31622 * 119.99678 * 344.98670 * 21 19 18 23 23 Si 1.86794 * 120.00099 * 164.98807 * 21 19 18 24 24 H 1.48499 * 109.47064 * 89.99798 * 23 21 19 25 25 H 1.48504 * 109.47105 * 209.99803 * 23 21 19 26 26 H 1.48501 * 109.47027 * 329.99660 * 23 21 19 27 27 C 1.46918 * 118.73689 * 53.61445 * 18 17 16 28 28 H 1.08993 * 109.47237 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46729 * 300.00072 * 1 2 3 30 30 H 1.09002 * 109.47099 * 59.99515 * 1 2 3 31 31 H 1.09001 * 109.47209 * 60.00125 * 3 2 1 32 32 H 1.08996 * 109.46853 * 299.99975 * 3 2 1 33 33 H 0.96997 * 120.00032 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47021 * 59.99754 * 7 6 4 35 35 H 1.09003 * 109.47401 * 300.00767 * 7 6 4 36 36 H 1.08992 * 109.47293 * 60.00136 * 8 7 6 37 37 H 1.09005 * 109.47236 * 299.99634 * 8 7 6 38 38 H 0.96998 * 119.99869 * 4.75105 * 11 9 8 39 39 H 1.09002 * 109.47257 * 64.84271 * 13 12 11 40 40 H 1.09006 * 109.47047 * 184.83662 * 13 12 11 41 41 H 0.96698 * 114.00042 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.41570 * 298.51035 * 15 12 11 43 43 H 1.09001 * 109.42590 * 178.59188 * 15 12 11 44 44 H 1.09000 * 109.49769 * 301.43201 * 16 15 12 45 45 H 1.09000 * 109.52868 * 181.34493 * 16 15 12 46 46 H 1.09008 * 109.57999 * 185.57990 * 17 16 15 47 47 H 1.09000 * 109.70364 * 65.23103 * 17 16 15 48 48 H 0.96997 * 119.99666 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.59113 * 66.17418 * 27 18 17 50 50 H 1.09007 * 109.58535 * 186.46168 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2766 2.2967 0.0002 7 6 5.7370 2.1810 0.0003 8 6 6.3593 3.5787 0.0004 9 6 7.8616 3.4596 -0.0002 10 8 8.3832 2.3646 -0.0002 11 7 8.6256 4.5699 0.0003 12 6 10.0824 4.4567 -0.1055 13 6 10.6158 3.6170 1.0569 14 8 10.1804 4.1848 2.2939 15 6 10.4479 3.7880 -1.4363 16 6 9.8867 4.6128 -2.5968 17 6 10.5108 6.0117 -2.5724 18 7 10.2885 6.6056 -1.2470 19 6 9.7014 7.8365 -1.1236 20 1 9.1314 8.0766 -0.2382 21 6 9.8387 8.7757 -2.1366 22 7 10.7562 8.6119 -3.0659 23 14 8.7214 10.2720 -2.1806 24 1 9.3444 11.3779 -1.4099 25 1 8.5230 10.7004 -3.5886 26 1 7.4085 9.9273 -1.5784 27 6 10.7088 5.8539 -0.0566 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8595 3.1724 -0.0001 34 1 6.0586 1.6397 -0.8895 35 1 6.0586 1.6403 0.8904 36 1 6.0377 4.1195 0.8903 37 1 6.0378 4.1197 -0.8896 38 1 8.2109 5.4439 0.0707 39 1 10.2385 2.5979 0.9721 40 1 11.7053 3.6047 1.0262 41 1 10.4827 3.7029 3.0758 42 1 10.0240 2.7841 -1.4659 43 1 11.5326 3.7268 -1.5253 44 1 8.8046 4.6954 -2.4946 45 1 10.1267 4.1238 -3.5409 46 1 10.0423 6.6341 -3.3349 47 1 11.5810 5.9401 -2.7660 48 1 10.8524 9.2683 -3.7735 49 1 11.7951 5.7671 -0.0440 50 1 10.3732 6.3735 0.8409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724641286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:34 Heat of formation + Delta-G solvation = -171.910900 kcal Electronic energy + Delta-G solvation = -31314.047595 eV Core-core repulsion = 26955.060237 eV Total energy + Delta-G solvation = -4358.987359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47794 -40.79585 -39.08015 -38.40390 -37.36672 -36.22248 -35.43807 -33.90886 -32.51136 -32.31642 -31.12981 -29.46199 -27.27275 -26.85952 -26.57419 -24.79381 -23.90219 -22.47457 -21.90736 -21.34259 -20.09901 -18.67427 -18.51917 -18.17461 -17.99121 -17.59548 -17.38768 -16.86926 -16.74883 -16.55679 -16.26769 -15.83414 -15.67540 -15.42028 -15.16193 -15.13904 -14.72307 -14.54979 -14.42191 -14.13824 -14.02667 -13.86784 -13.42455 -13.18348 -13.13849 -12.90351 -12.81406 -12.75756 -12.47105 -12.43092 -12.34112 -12.16350 -11.93981 -11.75434 -11.48362 -11.21639 -11.09827 -10.94640 -10.75139 -10.52819 -10.32713 -10.19575 -9.79190 -8.64591 -7.82562 -5.30098 1.51789 1.53284 1.54005 1.61909 1.72118 1.79401 2.44338 2.54798 3.16415 3.31807 3.34048 3.63677 3.67061 3.83338 3.89321 4.04893 4.11784 4.17236 4.22383 4.27958 4.30413 4.36728 4.52074 4.53939 4.56408 4.59591 4.65533 4.78917 4.85593 4.88985 4.90262 4.92931 4.95546 5.01694 5.08468 5.19871 5.27899 5.32692 5.55331 5.67650 5.73530 5.80409 6.05577 6.42098 6.53250 6.78551 6.93200 7.17819 7.21182 7.41349 7.86674 8.40348 9.23669 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002597 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.575719 B =10779.900486 C =12240.743803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.047 3.953 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.711 5.711 7 C 0.148 3.852 8 C -0.140 4.140 9 C 0.516 3.484 10 O -0.580 6.580 11 N -0.688 5.688 12 C 0.171 3.829 13 C 0.074 3.926 14 O -0.576 6.576 15 C -0.113 4.113 16 C -0.122 4.122 17 C 0.178 3.822 18 N -0.599 5.599 19 C -0.254 4.254 20 H 0.074 0.926 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.291 1.291 25 H -0.300 1.300 26 H -0.261 1.261 27 C 0.153 3.847 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.423 0.577 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.391 0.609 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.058 0.942 47 H -0.007 1.007 48 H 0.248 0.752 49 H 0.023 0.977 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 -9.394 8.036 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.032 4.032 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.366 5.366 7 C 0.023 3.977 8 C -0.180 4.180 9 C 0.303 3.697 10 O -0.461 6.461 11 N -0.337 5.337 12 C 0.083 3.917 13 C -0.005 4.005 14 O -0.383 6.383 15 C -0.151 4.151 16 C -0.161 4.161 17 C 0.052 3.948 18 N -0.322 5.322 19 C -0.384 4.384 20 H 0.092 0.908 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.218 1.218 25 H -0.226 1.226 26 H -0.186 1.186 27 C 0.026 3.974 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.243 0.757 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.239 0.761 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.011 0.989 48 H 0.057 0.943 49 H 0.040 0.960 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.139 -10.542 7.496 20.683 hybrid contribution 0.022 1.435 -0.062 1.436 sum -16.117 -9.107 7.434 19.949 Atomic orbital electron populations 1.23030 0.78204 1.04097 1.01750 1.87970 1.22227 1.26996 1.95831 1.22395 0.88379 0.86750 1.05703 1.21079 0.90510 0.83918 0.75398 1.90734 1.75976 1.28916 1.50362 1.45675 1.06258 1.09519 1.75121 1.20732 0.78949 0.96211 1.01790 1.21732 0.90694 0.98103 1.07510 1.20727 0.90078 0.83782 0.75102 1.90621 1.75658 1.27797 1.52036 1.45738 1.06172 1.09227 1.72573 1.20818 0.80934 0.96558 0.93386 1.22481 0.97606 0.96642 0.83767 1.86426 1.78704 1.57282 1.15905 1.21716 1.00704 0.99001 0.93728 1.21912 1.00155 0.96747 0.97301 1.20606 0.95254 0.90989 0.87907 1.44219 1.70189 1.17092 1.00708 1.19486 1.24106 0.90076 1.04691 0.90797 1.25829 0.99040 1.00299 0.99479 1.70182 1.34272 1.37087 1.16737 0.85286 0.79511 0.79538 0.76119 1.21841 1.22649 1.18560 1.21088 0.95659 0.90154 0.90480 0.88990 0.92039 0.92156 0.86802 0.86993 0.73924 0.93104 0.92705 0.85467 0.86105 0.75730 0.92174 0.92675 0.76062 0.91393 0.91693 0.92779 0.92056 0.92387 0.98867 0.94325 0.95950 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -8.21 10.24 -129.94 -1.33 -9.54 16 3 C 0.05 0.62 6.42 71.24 0.46 1.07 16 4 C 0.50 11.15 7.91 87.66 0.69 11.84 16 5 O -0.58 -20.22 16.50 16.01 0.26 -19.96 16 6 N -0.71 -11.52 5.56 -463.07 -2.57 -14.09 16 7 C 0.15 3.32 4.96 86.38 0.43 3.75 16 8 C -0.14 -2.62 5.82 29.85 0.17 -2.44 16 9 C 0.52 14.52 7.24 87.66 0.63 15.16 16 10 O -0.58 -19.91 12.32 -3.03 -0.04 -19.95 16 11 N -0.69 -20.64 3.96 -422.10 -1.67 -22.31 16 12 C 0.17 5.67 0.46 3.79 0.00 5.67 16 13 C 0.07 2.17 5.62 71.98 0.40 2.58 16 14 O -0.58 -15.56 13.07 -148.98 -1.95 -17.51 16 15 C -0.11 -3.86 4.51 30.73 0.14 -3.72 16 16 C -0.12 -4.54 5.93 30.67 0.18 -4.36 16 17 C 0.18 8.22 5.29 86.36 0.46 8.68 16 18 N -0.60 -27.58 2.88 -699.08 -2.01 -29.59 16 19 C -0.25 -12.66 9.59 84.03 0.81 -11.86 16 20 H 0.07 3.51 7.87 -2.91 -0.02 3.49 16 21 C -0.05 -2.68 4.96 84.86 0.42 -2.26 16 22 N -0.94 -53.13 11.10 21.65 0.24 -52.89 16 23 Si 0.97 41.97 29.58 68.60 2.03 44.00 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 C 0.15 5.97 5.05 86.37 0.44 6.41 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.42 3.07 8.47 -92.71 -0.79 2.28 16 34 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.41 12.17 8.45 -92.71 -0.78 11.39 16 39 H 0.06 1.89 6.11 -2.39 -0.01 1.87 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.39 6.92 9.12 -74.06 -0.68 6.24 16 42 H 0.07 2.36 6.48 -2.38 -0.02 2.34 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 2.00 7.54 -2.39 -0.02 1.99 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.06 3.04 6.03 -2.38 -0.01 3.03 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 49 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 2.50 7.77 -2.38 -0.02 2.48 16 Total: -1.00 -78.70 401.35 -1.83 -80.53 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -1.27 Total: 29.31 kcal Atomic # 6 Polarization: 25.52 SS G_CDS: 6.48 Total: 32.01 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -6.02 Total: -118.88 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -3.05 Total: -66.95 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -78.70 -1.83 -80.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724641286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.384 kcal (2) G-P(sol) polarization free energy of solvation -78.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds