Wall clock time and date at job start Wed Apr 1 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.66792 * 2 1 4 4 C 1.54997 * 110.61927 * 122.95788 * 2 1 3 5 5 C 1.54807 * 102.09035 * 155.52825 * 4 2 1 6 6 H 1.09001 * 110.59776 * 97.85596 * 5 4 2 7 7 C 1.50702 * 110.48522 * 220.44180 * 5 4 2 8 8 O 1.21282 * 120.00311 * 17.64544 * 7 5 4 9 9 N 1.34779 * 119.99981 * 197.63805 * 7 5 4 10 10 C 1.46494 * 120.00032 * 175.14915 * 9 7 5 11 11 C 1.52994 * 109.47742 * 265.89394 * 10 9 7 12 12 O 1.42902 * 109.46943 * 67.04187 * 11 10 9 13 13 C 1.46499 * 119.99738 * 355.15294 * 9 7 5 14 14 C 1.53004 * 109.47060 * 267.30243 * 13 9 7 15 15 N 1.46905 * 109.47060 * 176.96291 * 14 13 9 16 16 C 1.46894 * 110.99661 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.46959 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99786 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00102 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99808 * 179.97438 * 19 17 16 21 21 H 1.08007 * 120.00210 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00077 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00609 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99856 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46794 * 90.00052 * 24 22 20 26 26 H 1.48494 * 109.46911 * 209.99566 * 24 22 20 27 27 H 1.48499 * 109.47095 * 330.00031 * 24 22 20 28 28 C 1.54099 * 104.18887 * 339.12062 * 5 4 2 29 29 O 1.43742 * 107.29279 * 357.97166 * 28 5 4 30 30 H 1.09006 * 109.46788 * 181.51492 * 1 2 3 31 31 H 1.08997 * 109.47576 * 301.51031 * 1 2 3 32 32 H 1.08997 * 109.46876 * 61.51891 * 1 2 3 33 33 H 1.08998 * 110.90756 * 37.33118 * 4 2 1 34 34 H 1.09000 * 110.91175 * 273.72927 * 4 2 1 35 35 H 1.09010 * 109.47334 * 25.89826 * 10 9 7 36 36 H 1.09008 * 109.47439 * 145.88825 * 10 9 7 37 37 H 1.08999 * 109.47629 * 187.04354 * 11 10 9 38 38 H 1.08999 * 109.46815 * 307.04389 * 11 10 9 39 39 H 0.96699 * 114.00116 * 184.97929 * 12 11 10 40 40 H 1.09006 * 109.46775 * 147.30887 * 13 9 7 41 41 H 1.08996 * 109.47155 * 27.30520 * 13 9 7 42 42 H 1.08993 * 109.47332 * 296.96519 * 14 13 9 43 43 H 1.09007 * 109.46569 * 56.96829 * 14 13 9 44 44 H 1.00899 * 110.99696 * 56.04424 * 15 14 13 45 45 H 1.08997 * 109.46910 * 299.99688 * 16 15 14 46 46 H 1.08996 * 109.47562 * 60.00031 * 16 15 14 47 47 H 0.96996 * 119.99498 * 0.02562 * 19 17 16 48 48 H 0.96993 * 120.00515 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.87721 * 117.39866 * 28 5 4 50 50 H 1.08998 * 109.87422 * 238.39647 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0759 -0.7892 1.2172 5 6 3.4795 -1.2165 0.7236 6 1 4.2423 -0.5346 1.0996 7 6 3.7810 -2.6300 1.1504 8 8 2.8801 -3.3637 1.4984 9 7 5.0518 -3.0791 1.1452 10 6 5.3583 -4.4159 1.6599 11 6 5.7654 -4.3152 3.1312 12 8 4.6395 -3.9047 3.9098 13 6 6.1264 -2.2302 0.6249 14 6 6.3451 -2.5359 -0.8582 15 7 7.3721 -1.6346 -1.3977 16 6 7.6086 -1.8993 -2.8231 17 6 8.6661 -0.9582 -3.3401 18 8 9.1731 -0.1471 -2.5943 19 7 9.0491 -1.0186 -4.6310 20 6 10.0106 -0.1621 -5.1013 21 1 10.4616 0.5607 -4.4375 22 6 10.4059 -0.2246 -6.4319 23 7 11.3280 0.5960 -6.8828 24 14 9.6265 -1.4752 -7.5800 25 1 8.4283 -0.8780 -8.2224 26 1 10.6062 -1.8651 -8.6256 27 1 9.2255 -2.6766 -6.8046 28 6 3.3840 -1.1253 -0.8117 29 8 2.0385 -0.7353 -1.1336 30 1 -0.3633 -1.0274 0.0272 31 1 -0.3634 0.5371 0.8761 32 1 -0.3633 0.4901 -0.9033 33 1 1.4551 -1.6605 1.4260 34 1 2.1509 -0.1474 2.0951 35 1 4.4771 -5.0511 1.5693 36 1 6.1777 -4.8476 1.0849 37 1 6.1129 -5.2878 3.4796 38 1 6.5665 -3.5837 3.2372 39 1 4.8426 -3.7462 4.8418 40 1 7.0455 -2.4289 1.1762 41 1 5.8511 -1.1822 0.7432 42 1 6.6726 -3.5692 -0.9718 43 1 5.4113 -2.3889 -1.4010 44 1 8.2288 -1.7052 -0.8694 45 1 7.9447 -2.9283 -2.9506 46 1 6.6835 -1.7478 -3.3792 47 1 8.6438 -1.6675 -5.2272 48 1 11.6037 0.5526 -7.8117 49 1 4.0854 -0.3782 -1.1829 50 1 3.6072 -2.0957 -1.2551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724670387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:56 Heat of formation + Delta-G solvation = -153.298172 kcal Electronic energy + Delta-G solvation = -30928.361791 eV Core-core repulsion = 26570.181540 eV Total energy + Delta-G solvation = -4358.180250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88988 -39.00519 -38.53315 -37.22529 -36.57015 -34.85217 -33.89796 -32.64903 -32.15220 -31.70679 -30.34667 -28.89238 -26.38785 -26.21597 -24.26273 -23.91174 -22.47470 -22.08942 -21.36374 -19.50288 -18.96164 -18.33389 -18.04427 -17.51839 -16.97756 -16.66039 -16.36837 -15.89644 -15.60670 -15.29134 -15.06603 -14.90178 -14.40171 -14.31530 -14.01094 -13.95825 -13.84079 -13.63292 -13.18585 -13.12485 -12.72182 -12.60682 -12.54147 -12.46902 -12.36513 -12.08608 -12.00268 -11.78190 -11.65981 -11.46583 -11.35008 -11.25041 -11.16659 -11.00971 -10.62324 -10.43790 -10.06928 -10.00978 -9.67398 -9.60896 -9.02495 -8.65042 -8.29990 -8.21239 -6.34404 -3.86150 2.41446 2.59063 3.00035 3.05216 3.13422 3.60052 3.68709 3.86170 3.95297 4.07465 4.18428 4.32056 4.55350 4.60418 4.70189 4.74253 4.76397 4.83573 4.88189 4.93075 4.99084 5.00428 5.10833 5.17479 5.18539 5.24745 5.33270 5.39184 5.42712 5.49968 5.55286 5.58067 5.60353 5.70055 5.71403 5.75876 5.87631 5.87798 5.97512 6.23208 6.68955 6.89775 7.08859 7.29579 7.42248 7.54126 7.98540 8.10371 8.55597 8.91135 9.38584 9.77813 10.78566 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.002466 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.745381 B =11349.605315 C =12976.286029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.073 0.927 4 C -0.137 4.137 5 C -0.148 4.148 6 H 0.108 0.892 7 C 0.533 3.467 8 O -0.521 6.521 9 N -0.609 5.609 10 C 0.111 3.889 11 C 0.059 3.941 12 O -0.560 6.560 13 C 0.106 3.894 14 C 0.036 3.964 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.063 3.937 29 O -0.370 6.370 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.374 0.626 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.352 0.648 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.079 0.921 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 -9.076 18.607 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.090 0.910 4 C -0.175 4.175 5 C -0.169 4.169 6 H 0.126 0.874 7 C 0.320 3.680 8 O -0.396 6.396 9 N -0.343 5.343 10 C -0.011 4.011 11 C -0.020 4.020 12 O -0.365 6.365 13 C -0.018 4.018 14 C -0.095 4.095 15 N -0.298 5.298 16 C -0.084 4.084 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.014 4.014 29 O -0.289 6.289 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.220 0.780 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.171 0.829 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.135 -8.444 18.220 26.398 hybrid contribution 0.822 -1.716 -0.384 1.941 sum -16.313 -10.160 17.835 26.219 Atomic orbital electron populations 1.21763 0.92984 1.03089 1.02461 1.23166 0.95469 0.95275 0.84713 0.90959 1.23212 0.94195 1.01690 0.98371 1.22769 1.00548 0.95267 0.98319 0.87409 1.20203 0.81981 0.88970 0.76804 1.90677 1.44592 1.57626 1.46716 1.47783 1.07278 1.16767 1.62474 1.21535 1.02897 0.84716 0.91985 1.22605 0.88605 0.98559 0.92210 1.86652 1.34864 1.90816 1.24126 1.21619 0.90658 0.95890 0.93621 1.22504 0.97278 0.94614 0.95117 1.59977 1.13651 1.53687 1.02441 1.21705 0.99581 0.97298 0.89800 1.19657 0.86285 0.87599 0.82974 1.90566 1.57981 1.39916 1.56269 1.42205 1.37485 1.34041 1.09119 1.19424 1.14373 1.14019 0.95636 0.86251 1.25043 0.96678 0.97515 0.96880 1.69616 1.29327 1.36768 1.16300 0.86673 0.79931 0.81273 0.81514 1.19522 1.20176 1.19544 1.23149 0.85363 1.01309 0.91581 1.88909 1.27458 1.73593 1.38967 0.91659 0.91084 0.91720 0.88338 0.89959 0.88715 0.89156 0.92803 0.93451 0.77953 0.90155 0.88733 0.95016 0.90524 0.82896 0.93657 0.89345 0.79662 0.91565 0.90334 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.66 37.16 0.36 -0.85 16 2 C 0.07 0.69 3.98 -25.68 -0.10 0.59 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.14 -1.33 6.06 -24.72 -0.15 -1.48 16 5 C -0.15 -1.47 2.53 -90.24 -0.23 -1.70 16 6 H 0.11 0.91 6.50 -51.93 -0.34 0.57 16 7 C 0.53 6.23 6.43 -10.98 -0.07 6.16 16 8 O -0.52 -7.91 14.98 5.56 0.08 -7.83 16 9 N -0.61 -5.75 2.45 -173.68 -0.43 -6.17 16 10 C 0.11 0.93 5.89 -4.05 -0.02 0.91 16 11 C 0.06 0.42 7.38 37.15 0.27 0.70 16 12 O -0.56 -5.17 13.36 -35.23 -0.47 -5.64 16 13 C 0.11 0.89 5.45 -4.04 -0.02 0.86 16 14 C 0.04 0.35 5.94 -3.82 -0.02 0.33 16 15 N -0.66 -8.85 6.13 -115.05 -0.70 -9.55 16 16 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 17 C 0.45 9.74 7.82 -10.98 -0.09 9.65 16 18 O -0.57 -14.52 15.78 5.54 0.09 -14.43 16 19 N -0.59 -13.65 5.09 -10.96 -0.06 -13.71 16 20 C -0.31 -8.49 10.16 -14.94 -0.15 -8.65 16 21 H 0.12 3.79 7.39 -52.48 -0.39 3.41 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.41 13.96 55.50 0.77 -24.64 16 24 Si 0.88 19.10 27.74 -169.99 -4.71 14.39 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 28 C 0.06 0.69 6.12 37.73 0.23 0.92 16 29 O -0.37 -4.65 11.22 -35.23 -0.40 -5.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.15 6.70 -51.93 -0.35 0.80 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.99 7.25 -51.92 -0.38 0.61 16 36 H 0.09 0.55 8.10 -51.92 -0.42 0.13 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.37 1.79 9.12 45.56 0.42 2.21 16 40 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.09 0.80 5.84 -51.93 -0.30 0.50 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.79 5.35 -51.93 -0.28 0.51 16 44 H 0.35 4.75 8.43 -39.29 -0.33 4.42 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.94 6.11 -51.93 -0.32 0.62 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -36.34 403.02 -7.03 -43.37 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.16 Total: 13.98 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -0.12 Total: 9.21 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.41 Total: -54.07 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.70 Total: -32.94 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.34 -7.03 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724670387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.933 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds