Wall clock time and date at job start Wed Apr 1 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99916 * 2 1 4 4 C 1.50703 * 109.46820 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00049 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99541 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00212 * 359.97438 * 6 4 3 8 8 C 1.46502 * 119.99726 * 179.97438 * 6 4 3 9 9 C 1.50691 * 109.47318 * 269.99867 * 8 6 4 10 10 O 1.21284 * 119.99958 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00477 * 179.97438 * 9 8 6 12 12 C 1.47153 * 120.97554 * 359.72253 * 11 9 8 13 13 C 1.53714 * 108.16069 * 129.43263 * 12 11 9 14 14 O 1.42957 * 109.15058 * 52.53345 * 13 12 11 15 15 C 1.42963 * 114.16825 * 297.28878 * 14 13 12 16 16 H 1.08996 * 109.51481 * 302.65751 * 15 14 13 17 17 C 1.52995 * 109.51416 * 182.50378 * 15 14 13 18 18 H 1.09005 * 109.47051 * 185.25480 * 17 15 14 19 19 C 1.53002 * 109.47233 * 305.25264 * 17 15 14 20 20 N 1.46501 * 109.47460 * 65.25859 * 17 15 14 21 21 C 1.36933 * 120.00277 * 154.99969 * 20 17 15 22 22 H 1.08000 * 120.00070 * 359.97438 * 21 20 17 23 23 C 1.38817 * 119.99871 * 179.97438 * 21 20 17 24 24 N 1.31624 * 119.99826 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47076 * 59.99859 * 25 23 21 27 27 H 1.48497 * 109.46924 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46739 * 299.99668 * 25 23 21 29 29 C 1.47152 * 120.98462 * 180.02562 * 11 9 8 30 30 H 1.09010 * 109.46685 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47535 * 59.99603 * 1 2 3 32 32 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47023 * 60.00664 * 3 2 1 34 34 H 1.08996 * 109.46788 * 299.99902 * 3 2 1 35 35 H 1.09002 * 109.47391 * 270.00122 * 7 6 4 36 36 H 1.09001 * 109.46813 * 150.00179 * 7 6 4 37 37 H 1.09004 * 109.47041 * 30.00306 * 7 6 4 38 38 H 1.09002 * 109.47278 * 30.00038 * 8 6 4 39 39 H 1.09006 * 109.46998 * 149.99560 * 8 6 4 40 40 H 1.09009 * 109.67954 * 249.20282 * 12 11 9 41 41 H 1.08998 * 109.68661 * 9.76204 * 12 11 9 42 42 H 1.09000 * 109.65688 * 292.56672 * 13 12 11 43 43 H 1.08999 * 109.48569 * 172.39581 * 13 12 11 44 44 H 1.09005 * 109.46926 * 60.00140 * 19 17 15 45 45 H 1.09004 * 109.47471 * 180.02562 * 19 17 15 46 46 H 1.08994 * 109.47399 * 300.00271 * 19 17 15 47 47 H 0.97004 * 119.99165 * 334.99283 * 20 17 15 48 48 H 0.96999 * 119.99356 * 179.97438 * 24 23 21 49 49 H 1.08992 * 109.68501 * 350.23487 * 29 11 9 50 50 H 1.08996 * 109.68487 * 110.75797 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0340 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 3.6464 3.6195 0.0003 8 6 5.7369 2.1812 -0.0003 9 6 6.2377 2.1410 1.4204 10 8 5.4520 2.2025 2.3423 11 7 7.5585 2.0358 1.6667 12 6 8.5301 1.9525 0.5647 13 6 9.6298 2.9969 0.8155 14 8 10.1507 2.8216 2.1352 15 6 9.1927 3.0317 3.1754 16 1 8.7737 4.0340 3.0875 17 6 9.8745 2.8792 4.5365 18 1 9.1269 2.9468 5.3269 19 6 10.5712 1.5189 4.6085 20 7 10.8648 3.9449 4.7088 21 6 11.2285 4.3448 5.9670 22 1 10.7850 3.8748 6.8323 23 6 12.1673 5.3542 6.1302 24 7 12.7083 5.9266 5.0755 25 14 12.6640 5.8992 7.8464 26 1 13.2437 4.7476 8.5831 27 1 13.6735 6.9838 7.7486 28 1 11.4689 6.4001 8.5719 29 6 8.0711 1.9941 3.0454 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.4901 3.9479 -1.0273 36 1 4.2937 4.3300 0.5144 37 1 2.6866 3.5645 0.5142 38 1 6.0288 1.2655 -0.5145 39 1 6.1693 3.0399 -0.5139 40 1 8.9676 0.9545 0.5357 41 1 8.0313 2.1629 -0.3813 42 1 9.2124 3.9991 0.7190 43 1 10.4301 2.8641 0.0876 44 1 11.3188 1.4514 3.8181 45 1 11.0566 1.4101 5.5784 46 1 9.8344 0.7260 4.4803 47 1 11.2630 4.3672 3.9316 48 1 13.3640 6.6322 5.1896 49 1 7.2682 2.2321 3.7430 50 1 8.4626 1.0001 3.2617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725317740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:05 Heat of formation + Delta-G solvation = -120.737696 kcal Electronic energy + Delta-G solvation = -31101.663496 eV Core-core repulsion = 26744.895174 eV Total energy + Delta-G solvation = -4356.768322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81744 -39.89920 -38.44343 -37.69366 -35.75399 -35.52478 -34.55087 -32.53022 -30.85878 -30.12590 -28.71148 -28.31825 -27.19999 -26.70354 -25.63583 -24.54323 -23.46904 -22.36417 -20.31331 -19.66220 -19.09575 -17.82177 -17.71139 -17.26088 -17.05274 -16.64573 -16.42341 -15.94689 -15.67327 -15.52439 -15.23083 -14.92630 -14.63623 -14.48251 -14.34344 -13.80344 -13.52240 -13.43381 -13.31211 -13.29572 -12.90049 -12.83948 -12.60832 -12.53896 -12.23330 -12.17495 -11.97597 -11.84952 -11.32715 -11.12864 -10.83238 -10.72011 -10.54462 -10.32945 -10.24009 -10.20533 -10.10817 -9.93011 -9.84175 -9.64355 -9.04391 -8.87952 -8.50018 -6.92514 -5.72727 -3.01311 2.08801 2.32433 2.46751 2.86601 3.46224 3.48289 3.50518 3.51475 3.95663 4.15613 4.25542 4.54406 4.58606 4.62906 4.67158 4.72184 4.75394 4.86410 4.88358 4.92533 4.94783 5.05545 5.09114 5.17894 5.24573 5.27388 5.33833 5.41482 5.59964 5.66949 5.70430 5.78745 5.86411 5.99932 6.00564 6.21443 6.35494 6.47614 6.51609 6.67425 6.84154 6.89083 7.17303 7.22568 7.46835 7.72347 7.79055 8.01461 8.45581 9.57358 10.14895 10.51747 11.49640 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002090 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.887302 B =13395.695081 C =13733.988035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.514 6.514 6 N -0.601 5.601 7 C 0.078 3.922 8 C 0.100 3.900 9 C 0.499 3.501 10 O -0.531 6.531 11 N -0.612 5.612 12 C 0.071 3.929 13 C 0.047 3.953 14 O -0.357 6.357 15 C 0.078 3.922 16 H 0.063 0.937 17 C 0.184 3.816 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.083 3.917 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.035 0.965 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.098 0.902 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.432 -6.380 -17.593 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.388 6.388 6 N -0.336 5.336 7 C -0.065 4.065 8 C -0.027 4.027 9 C 0.286 3.714 10 O -0.407 6.407 11 N -0.347 5.347 12 C -0.052 4.052 13 C -0.032 4.032 14 O -0.275 6.275 15 C 0.018 3.982 16 H 0.081 0.919 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.039 4.039 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.117 0.883 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.277 -7.117 -16.880 28.077 hybrid contribution 0.079 0.912 0.607 1.099 sum -21.198 -6.204 -16.273 27.435 Atomic orbital electron populations 1.22850 0.80204 1.03443 1.00160 1.88021 1.19918 1.25170 1.95419 1.22243 0.91292 0.87050 1.02629 1.20247 0.88862 0.83987 0.76097 1.90737 1.74428 1.26159 1.47463 1.47321 1.05129 1.06792 1.74363 1.21891 0.99220 0.83470 1.01878 1.21345 0.80965 1.05647 0.94709 1.21094 0.81901 0.76373 0.92066 1.90698 1.54542 1.49433 1.46066 1.48193 1.05633 1.73003 1.07877 1.22631 0.91342 1.01629 0.89645 1.22978 0.96426 0.96977 0.86788 1.88111 1.35591 1.90895 1.12921 1.22976 0.88622 0.96797 0.89788 0.91908 1.20197 0.91999 0.89962 0.90460 0.92334 1.22413 1.00455 0.97307 1.02069 1.42341 1.47219 1.40303 1.06165 1.19209 1.18470 1.14400 0.84940 0.91228 1.24738 0.99814 0.99365 0.97036 1.69671 1.32238 1.28467 1.27586 0.86274 0.77909 0.77968 0.84067 1.21292 1.21750 1.21328 1.22498 0.97807 1.01059 0.82581 0.93686 0.93778 0.88987 0.89881 0.90136 0.91898 0.90403 0.90770 0.86683 0.87155 0.90062 0.89372 0.92834 0.87791 0.92410 0.92898 0.94653 0.77695 0.93548 0.88326 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.97 10.24 -55.14 -0.56 -4.54 16 3 C 0.05 0.40 4.97 36.01 0.18 0.58 16 4 C 0.52 6.19 7.75 -10.98 -0.09 6.11 16 5 O -0.51 -8.42 16.08 -14.35 -0.23 -8.65 16 6 N -0.60 -5.70 2.36 -182.95 -0.43 -6.14 16 7 C 0.08 0.44 10.24 59.85 0.61 1.05 16 8 C 0.10 0.93 4.26 -5.20 -0.02 0.91 16 9 C 0.50 6.69 7.78 -10.99 -0.09 6.60 16 10 O -0.53 -9.13 15.90 5.55 0.09 -9.04 16 11 N -0.61 -7.86 3.01 -171.99 -0.52 -8.38 16 12 C 0.07 0.68 6.57 -3.31 -0.02 0.66 16 13 C 0.05 0.53 7.00 37.53 0.26 0.80 16 14 O -0.36 -5.92 9.24 -35.23 -0.33 -6.24 16 15 C 0.08 1.32 2.61 -26.56 -0.07 1.25 16 16 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 17 C 0.18 3.73 2.77 -67.93 -0.19 3.54 16 18 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 19 C -0.16 -3.05 9.06 37.16 0.34 -2.71 16 20 N -0.72 -18.25 5.10 -53.42 -0.27 -18.53 16 21 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 25 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 C 0.08 1.24 5.82 -3.51 -0.02 1.22 16 30 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.56 7.40 -51.93 -0.38 0.18 16 34 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 37 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 38 H 0.12 1.08 7.28 -51.93 -0.38 0.70 16 39 H 0.11 0.64 7.60 -51.93 -0.39 0.24 16 40 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.09 0.54 6.05 -51.93 -0.31 0.23 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 47 H 0.39 10.62 7.59 -40.82 -0.31 10.31 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.10 1.59 7.08 -51.93 -0.37 1.22 16 50 H 0.08 1.19 6.28 -51.93 -0.33 0.87 16 LS Contribution 404.51 15.07 6.10 6.10 Total: -1.00 -38.80 404.51 -6.84 -45.64 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.15 Total: 5.83 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 1.77 Total: 13.99 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.50 Total: -60.63 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.03 Total: -28.47 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.80 -6.84 -45.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725317740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.102 kcal (2) G-P(sol) polarization free energy of solvation -38.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds