Wall clock time and date at job start Wed Apr 1 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99916 * 2 1 4 4 C 1.50703 * 109.46820 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00049 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99541 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00212 * 359.97438 * 6 4 3 8 8 C 1.46502 * 119.99726 * 179.97438 * 6 4 3 9 9 C 1.50691 * 109.47318 * 269.99867 * 8 6 4 10 10 O 1.21284 * 119.99958 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00477 * 179.97438 * 9 8 6 12 12 C 1.47153 * 120.97554 * 359.72253 * 11 9 8 13 13 C 1.53714 * 108.16069 * 129.43263 * 12 11 9 14 14 O 1.42957 * 109.15058 * 52.53345 * 13 12 11 15 15 C 1.42963 * 114.16825 * 297.28878 * 14 13 12 16 16 H 1.08996 * 109.51481 * 302.65751 * 15 14 13 17 17 C 1.52995 * 109.51416 * 182.50378 * 15 14 13 18 18 H 1.09005 * 109.47051 * 185.25480 * 17 15 14 19 19 C 1.53002 * 109.47233 * 305.25264 * 17 15 14 20 20 N 1.46501 * 109.47460 * 65.25859 * 17 15 14 21 21 C 1.36933 * 120.00277 * 154.99969 * 20 17 15 22 22 H 1.08000 * 120.00070 * 359.97438 * 21 20 17 23 23 C 1.38817 * 119.99871 * 179.97438 * 21 20 17 24 24 N 1.31624 * 119.99826 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47076 * 59.99859 * 25 23 21 27 27 H 1.48497 * 109.46924 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46739 * 299.99668 * 25 23 21 29 29 C 1.47152 * 120.98462 * 180.02562 * 11 9 8 30 30 H 1.09010 * 109.46685 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47535 * 59.99603 * 1 2 3 32 32 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47023 * 60.00664 * 3 2 1 34 34 H 1.08996 * 109.46788 * 299.99902 * 3 2 1 35 35 H 1.09002 * 109.47391 * 270.00122 * 7 6 4 36 36 H 1.09001 * 109.46813 * 150.00179 * 7 6 4 37 37 H 1.09004 * 109.47041 * 30.00306 * 7 6 4 38 38 H 1.09002 * 109.47278 * 30.00038 * 8 6 4 39 39 H 1.09006 * 109.46998 * 149.99560 * 8 6 4 40 40 H 1.09009 * 109.67954 * 249.20282 * 12 11 9 41 41 H 1.08998 * 109.68661 * 9.76204 * 12 11 9 42 42 H 1.09000 * 109.65688 * 292.56672 * 13 12 11 43 43 H 1.08999 * 109.48569 * 172.39581 * 13 12 11 44 44 H 1.09005 * 109.46926 * 60.00140 * 19 17 15 45 45 H 1.09004 * 109.47471 * 180.02562 * 19 17 15 46 46 H 1.08994 * 109.47399 * 300.00271 * 19 17 15 47 47 H 0.97004 * 119.99165 * 334.99283 * 20 17 15 48 48 H 0.96999 * 119.99356 * 179.97438 * 24 23 21 49 49 H 1.08992 * 109.68501 * 350.23487 * 29 11 9 50 50 H 1.08996 * 109.68487 * 110.75797 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0340 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 3.6464 3.6195 0.0003 8 6 5.7369 2.1812 -0.0003 9 6 6.2377 2.1410 1.4204 10 8 5.4520 2.2025 2.3423 11 7 7.5585 2.0358 1.6667 12 6 8.5301 1.9525 0.5647 13 6 9.6298 2.9969 0.8155 14 8 10.1507 2.8216 2.1352 15 6 9.1927 3.0317 3.1754 16 1 8.7737 4.0340 3.0875 17 6 9.8745 2.8792 4.5365 18 1 9.1269 2.9468 5.3269 19 6 10.5712 1.5189 4.6085 20 7 10.8648 3.9449 4.7088 21 6 11.2285 4.3448 5.9670 22 1 10.7850 3.8748 6.8323 23 6 12.1673 5.3542 6.1302 24 7 12.7083 5.9266 5.0755 25 14 12.6640 5.8992 7.8464 26 1 13.2437 4.7476 8.5831 27 1 13.6735 6.9838 7.7486 28 1 11.4689 6.4001 8.5719 29 6 8.0711 1.9941 3.0454 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.4901 3.9479 -1.0273 36 1 4.2937 4.3300 0.5144 37 1 2.6866 3.5645 0.5142 38 1 6.0288 1.2655 -0.5145 39 1 6.1693 3.0399 -0.5139 40 1 8.9676 0.9545 0.5357 41 1 8.0313 2.1629 -0.3813 42 1 9.2124 3.9991 0.7190 43 1 10.4301 2.8641 0.0876 44 1 11.3188 1.4514 3.8181 45 1 11.0566 1.4101 5.5784 46 1 9.8344 0.7260 4.4803 47 1 11.2630 4.3672 3.9316 48 1 13.3640 6.6322 5.1896 49 1 7.2682 2.2321 3.7430 50 1 8.4626 1.0001 3.2617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725317740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:04 Heat of formation + Delta-G solvation = -150.327958 kcal Electronic energy + Delta-G solvation = -31102.946626 eV Core-core repulsion = 26744.895174 eV Total energy + Delta-G solvation = -4358.051452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76469 -40.85980 -39.55583 -38.41485 -37.12869 -36.56047 -35.76779 -34.34183 -32.13810 -31.16328 -29.96016 -29.32894 -28.16452 -27.36070 -26.59321 -25.99512 -24.82705 -23.64658 -21.37811 -20.99637 -19.99756 -19.30462 -18.63163 -18.47112 -17.91731 -17.52834 -17.30785 -17.00935 -16.74926 -16.60024 -16.36898 -16.06866 -15.82127 -15.62943 -15.38059 -15.10800 -14.96379 -14.48731 -14.39024 -14.02525 -13.99308 -13.90120 -13.62365 -13.42375 -13.21506 -13.16002 -12.97301 -12.96244 -12.80526 -12.45422 -12.39515 -12.35042 -12.22178 -11.84653 -11.65067 -11.60165 -11.25510 -11.04409 -10.96393 -10.92404 -10.78680 -9.82330 -9.61614 -9.00738 -7.92044 -5.20649 1.28279 1.45940 1.47426 1.50373 1.56259 1.62282 1.94336 2.56844 2.80063 2.94156 3.37847 3.41761 3.52416 3.58285 3.91578 3.95102 4.00486 4.04295 4.07028 4.16461 4.17926 4.26361 4.27030 4.34796 4.37296 4.44582 4.48940 4.55975 4.60054 4.62196 4.70768 4.80394 4.84965 4.85706 4.90528 4.96698 5.07664 5.16491 5.23132 5.30689 5.51261 5.59673 5.96088 6.23536 6.23753 6.26791 6.30377 6.95476 7.04521 7.35859 8.10912 8.36681 9.31054 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002090 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.887302 B =13395.695081 C =13733.988035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.049 3.951 4 C 0.509 3.491 5 O -0.573 6.573 6 N -0.599 5.599 7 C 0.070 3.930 8 C 0.101 3.899 9 C 0.493 3.507 10 O -0.578 6.578 11 N -0.613 5.613 12 C 0.073 3.927 13 C 0.038 3.962 14 O -0.384 6.384 15 C 0.096 3.904 16 H 0.044 0.956 17 C 0.175 3.825 18 H 0.055 0.945 19 C -0.148 4.148 20 N -0.730 5.730 21 C -0.241 4.241 22 H 0.075 0.925 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.279 1.279 27 H -0.295 1.295 28 H -0.278 1.278 29 C 0.093 3.907 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.154 0.846 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.083 0.917 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.894 -6.149 -19.209 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.030 4.030 4 C 0.298 3.702 5 O -0.451 6.451 6 N -0.332 5.332 7 C -0.071 4.071 8 C -0.025 4.025 9 C 0.281 3.719 10 O -0.457 6.457 11 N -0.347 5.347 12 C -0.049 4.049 13 C -0.039 4.039 14 O -0.302 6.302 15 C 0.036 3.964 16 H 0.062 0.938 17 C 0.066 3.934 18 H 0.073 0.927 19 C -0.208 4.208 20 N -0.371 5.371 21 C -0.373 4.373 22 H 0.093 0.907 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.802 3.198 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.205 1.205 29 C -0.031 4.031 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.172 0.828 40 H 0.106 0.894 41 H 0.149 0.851 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.774 -6.882 -18.519 30.149 hybrid contribution 0.477 0.826 1.044 1.414 sum -22.298 -6.056 -17.475 28.970 Atomic orbital electron populations 1.23042 0.78136 1.04203 1.01725 1.87963 1.22317 1.26843 1.95785 1.22405 0.88870 0.86728 1.05040 1.21011 0.90529 0.83666 0.75031 1.90696 1.75648 1.28339 1.50452 1.47522 1.05194 1.07690 1.72823 1.22190 0.99362 0.81345 1.04197 1.21522 0.81385 1.07672 0.91950 1.21918 0.81488 0.75042 0.93412 1.90672 1.55667 1.51537 1.47812 1.48304 1.06317 1.72501 1.07620 1.22845 0.90401 1.01386 0.90218 1.23315 0.98021 0.97825 0.84719 1.88058 1.36315 1.91059 1.14790 1.22499 0.88711 0.96467 0.88707 0.93783 1.20412 0.91084 0.89255 0.92619 0.92668 1.22212 1.00647 0.97225 1.00711 1.42486 1.48185 1.41524 1.04888 1.19600 1.17762 1.13831 0.86131 0.90730 1.25547 1.00496 1.00054 1.00717 1.69831 1.33158 1.29240 1.29580 0.85228 0.77482 0.77370 0.79767 1.20559 1.22136 1.20464 1.22179 0.96477 1.00235 0.84200 0.92632 0.91596 0.88804 0.88381 0.86331 0.88492 0.90838 0.89643 0.86391 0.82824 0.89364 0.85066 0.92647 0.85264 0.93348 0.94493 0.91573 0.79166 0.94104 0.89900 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.54 10.24 -129.94 -1.33 -9.87 16 3 C 0.05 0.72 4.97 71.24 0.35 1.08 16 4 C 0.51 11.56 7.75 87.66 0.68 12.24 16 5 O -0.57 -18.95 16.08 16.01 0.26 -18.69 16 6 N -0.60 -10.07 2.36 -851.12 -2.01 -12.08 16 7 C 0.07 0.57 10.24 127.77 1.31 1.88 16 8 C 0.10 1.64 4.26 85.63 0.36 2.00 16 9 C 0.49 12.65 7.78 87.65 0.68 13.33 16 10 O -0.58 -19.92 15.90 -3.04 -0.05 -19.97 16 11 N -0.61 -14.94 3.01 -816.46 -2.46 -17.40 16 12 C 0.07 1.20 6.57 86.50 0.57 1.77 16 13 C 0.04 0.80 7.00 72.22 0.51 1.31 16 14 O -0.38 -12.51 9.24 -148.98 -1.38 -13.89 16 15 C 0.10 3.29 2.61 30.71 0.08 3.37 16 16 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 17 C 0.18 7.19 2.77 44.99 0.12 7.31 16 18 H 0.06 2.28 8.08 -2.38 -0.02 2.27 16 19 C -0.15 -5.55 9.06 71.98 0.65 -4.90 16 20 N -0.73 -37.94 5.10 -322.94 -1.65 -39.59 16 21 C -0.24 -13.68 9.93 84.04 0.83 -12.85 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 25 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 C 0.09 2.76 5.82 86.37 0.50 3.27 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.12 7.40 -2.39 -0.02 1.11 16 34 H 0.12 0.79 8.11 -2.39 -0.02 0.77 16 35 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 37 H 0.08 0.51 6.44 -2.38 -0.02 0.50 16 38 H 0.12 1.92 7.28 -2.39 -0.02 1.91 16 39 H 0.15 1.11 7.60 -2.38 -0.02 1.09 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.39 16 41 H 0.13 1.03 6.05 -2.39 -0.01 1.02 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.89 7.56 -2.38 -0.02 1.87 16 45 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.07 2.04 6.42 -2.39 -0.02 2.02 16 47 H 0.38 21.16 7.59 -92.71 -0.70 20.46 16 48 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 49 H 0.08 2.73 7.08 -2.39 -0.02 2.72 16 50 H 0.08 2.43 6.28 -2.39 -0.01 2.41 16 Total: -1.00 -88.75 404.51 2.31 -86.45 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.24 Total: 28.50 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 8.37 Total: 27.37 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.84 Total: -128.79 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -2.50 Total: -62.42 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -88.75 2.31 -86.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725317740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.882 kcal (2) G-P(sol) polarization free energy of solvation -88.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds