Wall clock time and date at job start Wed Apr 1 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47447 * 2 1 4 4 C 1.42902 * 114.00075 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46978 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99965 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99835 * 179.97438 * 5 4 3 8 8 C 1.47157 * 120.98160 * 0.02562 * 7 5 4 9 9 C 1.53299 * 108.38362 * 230.49509 * 8 7 5 10 10 O 1.42959 * 109.22405 * 307.70101 * 9 8 7 11 11 C 1.42961 * 114.16921 * 62.57827 * 10 9 8 12 12 H 1.08997 * 109.51221 * 57.39237 * 11 10 9 13 13 C 1.53002 * 109.51312 * 177.49600 * 11 10 9 14 14 H 1.09001 * 109.46952 * 174.89615 * 13 11 10 15 15 C 1.52996 * 109.47011 * 54.89917 * 13 11 10 16 16 N 1.46895 * 109.47231 * 294.89884 * 13 11 10 17 17 C 1.46896 * 111.00306 * 204.99910 * 16 13 11 18 18 C 1.50696 * 109.47452 * 180.02562 * 17 16 13 19 19 O 1.21292 * 119.99879 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99700 * 359.71718 * 21 20 18 23 23 C 1.38942 * 119.99884 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00016 * 179.97438 * 23 21 20 26 26 H 1.48511 * 109.47043 * 90.00180 * 25 23 21 27 27 H 1.48494 * 109.47357 * 209.99845 * 25 23 21 28 28 H 1.48494 * 109.47227 * 330.00363 * 25 23 21 29 29 C 1.47166 * 120.94394 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46661 * 299.99842 * 1 2 3 32 32 H 1.09001 * 109.46925 * 59.99803 * 1 2 3 33 33 H 1.09003 * 109.46657 * 239.99658 * 2 1 3 34 34 H 1.09001 * 109.46925 * 120.00197 * 2 1 3 35 35 H 1.08996 * 109.47185 * 60.00172 * 4 3 2 36 36 H 1.08996 * 109.46820 * 300.00073 * 4 3 2 37 37 H 1.09003 * 109.67890 * 110.77373 * 8 7 5 38 38 H 1.08997 * 109.71271 * 350.23612 * 8 7 5 39 39 H 1.09000 * 109.50925 * 187.77360 * 9 8 7 40 40 H 1.09001 * 109.51035 * 67.62377 * 9 8 7 41 41 H 1.09006 * 109.47269 * 180.02562 * 15 13 11 42 42 H 1.09003 * 109.47689 * 299.99974 * 15 13 11 43 43 H 1.09001 * 109.47232 * 60.00028 * 15 13 11 44 44 H 1.00907 * 111.00152 * 81.04434 * 16 13 11 45 45 H 1.09000 * 109.47017 * 60.00110 * 17 16 13 46 46 H 1.08996 * 109.47227 * 300.00430 * 17 16 13 47 47 H 0.96999 * 120.00047 * 359.97438 * 20 18 17 48 48 H 0.97005 * 120.00019 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.72640 * 9.81127 * 29 7 5 50 50 H 1.09000 * 109.64817 * 249.25108 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7727 -0.0006 7 7 5.1211 3.2661 -0.0013 8 6 6.1803 2.2445 -0.0013 9 6 7.1708 2.5750 1.1210 10 8 7.5981 3.9326 0.9871 11 6 6.5473 4.8928 1.1203 12 1 6.0593 4.7668 2.0868 13 6 7.1294 6.3044 1.0218 14 1 6.3189 7.0331 1.0324 15 6 7.9203 6.4401 -0.2808 16 7 8.0211 6.5471 2.1636 17 6 8.1281 7.9835 2.4521 18 6 9.0493 8.1929 3.6262 19 8 9.5663 7.2393 4.1690 20 7 9.2987 9.4397 4.0731 21 6 10.1372 9.6302 5.1409 22 1 10.5943 8.7808 5.6269 23 6 10.3948 10.9156 5.6013 24 7 9.8351 11.9487 5.0129 25 14 11.5367 11.1752 7.0567 26 1 12.9302 11.3380 6.5697 27 1 11.1255 12.3949 7.7971 28 1 11.4623 9.9990 7.9601 29 6 5.5240 4.6815 -0.0013 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8334 0.9766 -0.8908 36 1 3.8341 0.9763 0.8891 37 1 6.6972 2.2517 -0.9610 38 1 5.7429 1.2614 0.1727 39 1 8.0340 1.9130 1.0514 40 1 6.6845 2.4400 2.0872 41 1 8.3354 7.4456 -0.3508 42 1 8.7308 5.7114 -0.2915 43 1 7.2586 6.2600 -1.1281 44 1 8.9312 6.1415 2.0044 45 1 7.1412 8.3810 2.6887 46 1 8.5284 8.5004 1.5799 47 1 8.8856 10.2023 3.6387 48 1 10.0152 12.8462 5.3340 49 1 4.6523 5.3122 0.1737 50 1 5.9740 4.9345 -0.9612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725325735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:20 Heat of formation + Delta-G solvation = -150.538113 kcal Electronic energy + Delta-G solvation = -30187.987335 eV Core-core repulsion = 25829.926770 eV Total energy + Delta-G solvation = -4358.060565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77636 -39.15447 -38.25522 -37.83287 -36.26695 -34.95133 -33.88638 -32.40040 -31.84689 -31.16271 -29.56519 -29.02346 -26.92907 -26.42157 -24.68167 -23.79601 -23.25641 -22.83236 -20.44087 -19.68197 -19.22832 -17.90680 -17.82768 -17.23706 -16.94738 -16.51672 -16.37896 -15.88960 -15.65045 -15.31449 -15.16193 -14.88858 -14.69052 -14.37583 -14.24071 -14.06569 -13.67461 -13.49025 -13.24271 -13.19719 -13.03562 -12.83264 -12.60315 -12.46007 -12.12134 -11.90253 -11.73558 -11.69301 -11.58683 -11.51353 -11.32611 -11.03272 -11.00586 -10.85410 -10.37153 -10.28905 -10.18997 -10.18929 -10.02864 -9.47865 -8.86748 -8.41806 -7.99829 -7.91962 -6.38707 -3.79412 2.18785 2.23545 3.19977 3.28396 3.31405 3.34598 3.52910 3.94721 4.02411 4.09808 4.26252 4.45564 4.47566 4.53732 4.58965 4.68290 4.74655 4.76297 4.84321 4.87638 4.89642 4.99124 5.12012 5.20426 5.24427 5.26802 5.31645 5.38101 5.39319 5.42749 5.45521 5.68102 5.69570 5.78288 5.79656 5.95133 5.97085 6.05600 6.23661 6.31610 6.56499 6.92523 6.98528 7.28064 7.58068 7.75137 7.78218 8.09778 8.64873 9.21151 9.57919 10.09673 10.79082 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.001723 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.127630 B =16243.810438 C =16483.207823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.047 3.953 5 C 0.517 3.483 6 O -0.515 6.515 7 N -0.615 5.615 8 C 0.070 3.930 9 C 0.048 3.952 10 O -0.362 6.362 11 C 0.092 3.908 12 H 0.074 0.926 13 C 0.094 3.906 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.659 5.659 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.082 3.918 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.357 0.643 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.102 0.898 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 -22.832 -15.493 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.033 4.033 5 C 0.304 3.696 6 O -0.389 6.389 7 N -0.351 5.351 8 C -0.053 4.053 9 C -0.030 4.030 10 O -0.281 6.281 11 C 0.033 3.967 12 H 0.091 0.909 13 C -0.017 4.017 14 H 0.109 0.891 15 C -0.241 4.241 16 N -0.291 5.291 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.040 4.040 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.177 0.823 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.121 0.879 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.933 -22.697 -14.622 29.937 hybrid contribution 0.855 0.580 -0.286 1.072 sum -12.078 -22.118 -14.908 29.280 Atomic orbital electron populations 1.21737 0.93234 1.02341 1.03580 1.22568 0.96146 0.83156 1.00226 1.88033 1.18289 1.26588 1.95410 1.22198 0.84172 0.94472 1.02445 1.20241 0.81982 0.90758 0.76645 1.90743 1.48611 1.51720 1.47834 1.48067 1.05066 1.07574 1.74432 1.22555 0.89876 0.91602 1.01277 1.22918 0.98284 0.84974 0.96803 1.88014 1.33139 1.13945 1.92953 1.22539 0.87583 0.89288 0.97306 0.90851 1.21495 0.96771 0.93703 0.89746 0.89060 1.22509 1.01386 1.02343 0.97871 1.60081 1.18089 1.12630 1.38298 1.21719 1.00365 0.89149 0.97093 1.19813 0.86199 0.84029 0.87247 1.90526 1.54822 1.40700 1.60576 1.41864 1.42407 1.06123 1.29757 1.19707 1.22176 0.93645 1.07327 0.87943 1.25251 0.98442 0.94982 0.99278 1.69615 1.44035 0.98933 1.41778 0.85858 0.79777 0.77869 0.80779 1.20453 1.20954 1.19438 1.22456 0.99725 0.81612 1.00224 0.90868 0.91572 0.91657 0.93155 0.93071 0.90264 0.90179 0.90059 0.89201 0.87507 0.92452 0.92436 0.91288 0.92298 0.82287 0.89649 0.93778 0.77473 0.91916 0.87939 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.35 6.66 37.16 0.25 0.59 16 3 O -0.36 -3.71 9.88 -55.14 -0.54 -4.25 16 4 C 0.05 0.36 4.79 36.01 0.17 0.53 16 5 C 0.52 5.75 7.79 -10.99 -0.09 5.67 16 6 O -0.51 -8.09 15.97 -14.35 -0.23 -8.32 16 7 N -0.61 -5.73 3.02 -172.26 -0.52 -6.25 16 8 C 0.07 0.42 6.54 -3.53 -0.02 0.40 16 9 C 0.05 0.37 6.98 37.31 0.26 0.63 16 10 O -0.36 -4.11 9.45 -35.23 -0.33 -4.44 16 11 C 0.09 1.06 2.70 -26.58 -0.07 0.99 16 12 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 13 C 0.09 1.16 2.46 -67.72 -0.17 0.99 16 14 H 0.09 1.06 7.80 -51.93 -0.41 0.65 16 15 C -0.18 -1.97 8.73 37.16 0.32 -1.64 16 16 N -0.66 -10.79 5.82 -108.00 -0.63 -11.42 16 17 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 18 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 19 O -0.58 -16.06 15.78 5.55 0.09 -15.97 16 20 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.08 0.84 5.82 -3.53 -0.02 0.82 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.39 8.02 -51.93 -0.42 -0.03 16 36 H 0.08 0.43 7.66 -51.93 -0.40 0.03 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.29 6.06 -51.93 -0.31 -0.02 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 42 H 0.07 0.79 7.55 -51.93 -0.39 0.40 16 43 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 44 H 0.36 6.25 8.17 -39.29 -0.32 5.93 16 45 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 46 H 0.04 0.71 7.43 -51.93 -0.39 0.32 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.10 1.18 7.08 -51.93 -0.37 0.81 16 50 H 0.08 0.74 6.27 -51.93 -0.33 0.42 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -36.01 405.46 -7.85 -43.87 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.10 Total: 11.27 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 0.66 Total: 11.74 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.48 Total: -56.25 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.02 Total: -32.98 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.01 -7.85 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725325735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.673 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds