Wall clock time and date at job start Wed Apr 1 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47450 * 2 1 4 4 C 1.42896 * 113.99843 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47046 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99755 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00264 * 179.97438 * 5 4 3 8 8 C 1.47153 * 120.97686 * 359.97438 * 7 5 4 9 9 C 1.53296 * 108.37988 * 230.55479 * 8 7 5 10 10 O 1.42963 * 109.22572 * 307.69840 * 9 8 7 11 11 C 1.42963 * 114.16457 * 62.57914 * 10 9 8 12 12 H 1.08998 * 109.55271 * 57.37321 * 11 10 9 13 13 C 1.53001 * 109.51271 * 177.50103 * 11 10 9 14 14 H 1.09003 * 109.46941 * 184.74992 * 13 11 10 15 15 C 1.53005 * 109.46776 * 304.74440 * 13 11 10 16 16 N 1.46901 * 109.47351 * 64.74355 * 13 11 10 17 17 C 1.46898 * 110.99614 * 154.99957 * 16 13 11 18 18 C 1.50706 * 109.46984 * 180.02562 * 17 16 13 19 19 O 1.21295 * 119.99863 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00080 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99873 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99509 * 359.71860 * 21 20 18 23 23 C 1.38950 * 120.00048 * 179.72298 * 21 20 18 24 24 N 1.31404 * 119.99928 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99705 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47292 * 90.00321 * 25 23 21 27 27 H 1.48504 * 109.46709 * 209.99863 * 25 23 21 28 28 H 1.48496 * 109.47395 * 329.99874 * 25 23 21 29 29 C 1.47149 * 120.98378 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.47099 * 60.00118 * 1 2 3 31 31 H 1.08995 * 109.47571 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46956 * 300.00342 * 1 2 3 33 33 H 1.09001 * 109.46956 * 239.99658 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99882 * 2 1 3 35 35 H 1.08994 * 109.47505 * 60.00041 * 4 3 2 36 36 H 1.09001 * 109.47267 * 299.99064 * 4 3 2 37 37 H 1.08997 * 109.68140 * 350.27108 * 8 7 5 38 38 H 1.08996 * 109.68417 * 110.83607 * 8 7 5 39 39 H 1.08999 * 109.51736 * 67.62347 * 9 8 7 40 40 H 1.08994 * 109.51567 * 187.77530 * 9 8 7 41 41 H 1.09003 * 109.46935 * 60.00548 * 15 13 11 42 42 H 1.08999 * 109.46748 * 180.02562 * 15 13 11 43 43 H 1.09000 * 109.47218 * 299.99782 * 15 13 11 44 44 H 1.00890 * 111.00276 * 278.95765 * 16 13 11 45 45 H 1.09004 * 109.47320 * 60.00702 * 17 16 13 46 46 H 1.09001 * 109.47291 * 299.99999 * 17 16 13 47 47 H 0.96996 * 119.99858 * 359.72084 * 20 18 17 48 48 H 0.96999 * 119.99865 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.67915 * 9.72086 * 29 7 5 50 50 H 1.08996 * 109.71267 * 249.18694 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7727 -0.0016 7 7 5.1211 3.2661 -0.0013 8 6 6.1803 2.2445 -0.0002 9 6 7.1696 2.5751 1.1231 10 8 7.5972 3.9328 0.9894 11 6 6.5462 4.8930 1.1214 12 1 6.0566 4.7674 2.0871 13 6 7.1284 6.3045 1.0232 14 1 6.3414 7.0357 1.2078 15 6 8.2358 6.4731 2.0654 16 7 7.6848 6.5124 -0.3204 17 6 7.7061 7.9399 -0.6662 18 6 8.2813 8.1135 -2.0483 19 8 8.6388 7.1434 -2.6826 20 7 8.3995 9.3466 -2.5791 21 6 8.9223 9.5044 -3.8367 22 1 9.2436 8.6409 -4.4001 23 6 9.0388 10.7753 -4.3862 24 7 9.5404 10.9266 -5.5913 25 14 8.4825 12.2688 -3.4118 26 1 9.6175 12.7843 -2.6048 27 1 8.0197 13.3255 -4.3469 28 1 7.3679 11.8838 -2.5091 29 6 5.5250 4.6811 -0.0024 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8333 0.9766 -0.8907 36 1 3.8340 0.9764 0.8892 37 1 5.7422 1.2618 0.1740 38 1 6.6981 2.2516 -0.9593 39 1 6.6825 2.4403 2.0888 40 1 8.0329 1.9132 1.0545 41 1 9.0228 5.7418 1.8809 42 1 8.6502 7.4788 1.9958 43 1 7.8229 6.3189 3.0624 44 1 8.6059 6.1080 -0.3969 45 1 8.3214 8.4791 0.0541 46 1 6.6903 8.3345 -0.6436 47 1 8.1106 10.1221 -2.0731 48 1 9.6214 11.8137 -5.9751 49 1 4.6529 5.3119 0.1702 50 1 5.9766 4.9338 -0.9616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725326340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:28 Heat of formation + Delta-G solvation = -143.711291 kcal Electronic energy + Delta-G solvation = -30648.062822 eV Core-core repulsion = 26290.298291 eV Total energy + Delta-G solvation = -4357.764532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64021 -39.11897 -38.39630 -37.76477 -36.32914 -34.87834 -33.92693 -32.15752 -31.77322 -31.54442 -29.91112 -28.97309 -27.09516 -26.39254 -24.32850 -23.68397 -23.19206 -22.77738 -20.57479 -19.51566 -19.35603 -18.35854 -17.74314 -17.15433 -16.86738 -16.63144 -16.12002 -15.90461 -15.48091 -15.42651 -15.20542 -14.83724 -14.75080 -14.51216 -14.08515 -13.90702 -13.78724 -13.28481 -13.22868 -13.06224 -12.93341 -12.80083 -12.64977 -12.32314 -12.27937 -12.05669 -11.84706 -11.71662 -11.69908 -11.61866 -11.51086 -11.14503 -11.05806 -10.76801 -10.57232 -10.29379 -10.11099 -9.95021 -9.87815 -9.54277 -8.78090 -8.53688 -8.16126 -8.06195 -6.28532 -3.79738 2.36798 2.37451 3.05272 3.08666 3.17159 3.42347 3.51559 3.77869 4.07440 4.13197 4.19413 4.45917 4.54856 4.60816 4.64307 4.71179 4.76385 4.82941 4.83403 4.88771 4.93364 4.96428 5.14580 5.18512 5.24870 5.25848 5.33203 5.35457 5.46862 5.50993 5.54486 5.59747 5.71651 5.74766 5.77764 5.89490 5.96670 6.10652 6.15947 6.22665 6.66198 6.93110 7.10165 7.16243 7.60661 7.64716 7.94216 8.17529 8.62736 8.97930 9.45466 9.86104 10.84676 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002171 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.816613 B =12893.071159 C =13898.813685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.047 3.953 5 C 0.515 3.485 6 O -0.517 6.517 7 N -0.615 5.615 8 C 0.070 3.930 9 C 0.050 3.950 10 O -0.364 6.364 11 C 0.095 3.905 12 H 0.060 0.940 13 C 0.092 3.908 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.658 5.658 17 C 0.046 3.954 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.088 3.912 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.358 0.642 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.095 0.905 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -20.479 19.152 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.033 4.033 5 C 0.302 3.698 6 O -0.392 6.392 7 N -0.351 5.351 8 C -0.053 4.053 9 C -0.028 4.028 10 O -0.282 6.282 11 C 0.036 3.964 12 H 0.078 0.922 13 C -0.020 4.020 14 H 0.110 0.890 15 C -0.237 4.237 16 N -0.290 5.290 17 C -0.087 4.087 18 C 0.237 3.763 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.034 4.034 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.179 0.821 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.917 -20.437 18.158 29.438 hybrid contribution 0.326 1.216 1.197 1.737 sum -10.591 -19.221 19.355 29.262 Atomic orbital electron populations 1.21734 0.93294 1.02282 1.03569 1.22559 0.96104 0.83272 1.00176 1.88036 1.18409 1.26457 1.95398 1.22209 0.84029 0.94745 1.02320 1.20201 0.82126 0.90609 0.76863 1.90736 1.48653 1.51726 1.48086 1.48131 1.04841 1.08048 1.74089 1.22506 0.89891 0.91430 1.01514 1.22895 0.98395 0.84914 0.96548 1.88022 1.32980 1.13999 1.93212 1.22518 0.88001 0.89146 0.96755 0.92228 1.21570 0.97510 0.93958 0.88919 0.89031 1.22410 0.99871 1.02225 0.99202 1.60153 1.31786 1.13346 1.23755 1.21766 1.01359 0.89763 0.95816 1.19710 0.84716 0.83758 0.88154 1.90569 1.52730 1.38631 1.62586 1.42212 1.57623 1.06336 1.16950 1.19428 1.37323 0.96015 0.90487 0.86307 1.25038 0.97519 0.97656 0.96006 1.69619 1.44330 1.23687 1.14587 0.86670 0.79165 0.83339 0.80206 1.19706 1.20208 1.19456 1.22385 0.98692 0.80303 1.01980 0.91578 0.90916 0.91680 0.93093 0.93227 0.90196 0.90464 0.89455 0.89569 0.93060 0.87581 0.91235 0.92464 0.92456 0.82080 0.93657 0.89499 0.79724 0.91655 0.88661 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.36 -4.07 9.88 -55.14 -0.54 -4.61 16 4 C 0.05 0.41 4.79 36.01 0.17 0.59 16 5 C 0.52 6.52 7.79 -10.98 -0.09 6.43 16 6 O -0.52 -8.95 15.97 -14.35 -0.23 -9.18 16 7 N -0.61 -6.83 3.02 -172.26 -0.52 -7.35 16 8 C 0.07 0.53 6.54 -3.53 -0.02 0.51 16 9 C 0.05 0.37 6.98 37.31 0.26 0.63 16 10 O -0.36 -3.94 9.46 -35.23 -0.33 -4.28 16 11 C 0.09 1.04 2.66 -26.56 -0.07 0.96 16 12 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 13 C 0.09 1.04 2.50 -67.71 -0.17 0.87 16 14 H 0.09 0.96 7.80 -51.93 -0.40 0.55 16 15 C -0.18 -1.79 8.97 37.16 0.33 -1.45 16 16 N -0.66 -9.75 4.72 -107.98 -0.51 -10.26 16 17 C 0.05 0.74 5.97 -4.97 -0.03 0.71 16 18 C 0.45 10.17 7.82 -10.98 -0.09 10.08 16 19 O -0.56 -15.05 15.78 5.54 0.09 -14.97 16 20 N -0.59 -14.13 5.09 -10.96 -0.06 -14.19 16 21 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 25 Si 0.88 19.56 27.74 -169.99 -4.71 14.84 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 C 0.09 1.12 5.83 -3.52 -0.02 1.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.53 8.02 -51.93 -0.42 0.12 16 36 H 0.08 0.45 7.66 -51.93 -0.40 0.05 16 37 H 0.09 0.38 6.05 -51.93 -0.31 0.07 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.75 7.55 -51.93 -0.39 0.36 16 42 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 5.79 8.17 -39.30 -0.32 5.47 16 45 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 46 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 47 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.10 1.33 7.08 -51.93 -0.37 0.96 16 50 H 0.11 1.63 7.25 -51.93 -0.38 1.25 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -36.81 404.19 -7.49 -44.30 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -8.20 Total: 12.10 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 0.66 Total: 12.69 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.31 Total: -57.01 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.02 Total: -33.03 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.81 -7.49 -44.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725326340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.409 kcal (2) G-P(sol) polarization free energy of solvation -36.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds