Wall clock time and date at job start Wed Apr 1 2020 02:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47450 * 2 1 4 4 C 1.42896 * 113.99843 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47046 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99755 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00264 * 179.97438 * 5 4 3 8 8 C 1.47153 * 120.97686 * 359.97438 * 7 5 4 9 9 C 1.53296 * 108.37988 * 230.55479 * 8 7 5 10 10 O 1.42963 * 109.22572 * 307.69840 * 9 8 7 11 11 C 1.42963 * 114.16457 * 62.57914 * 10 9 8 12 12 H 1.08998 * 109.55271 * 57.37321 * 11 10 9 13 13 C 1.53001 * 109.51271 * 177.50103 * 11 10 9 14 14 H 1.09003 * 109.46941 * 184.74992 * 13 11 10 15 15 C 1.53005 * 109.46776 * 304.74440 * 13 11 10 16 16 N 1.46901 * 109.47351 * 64.74355 * 13 11 10 17 17 C 1.46898 * 110.99614 * 154.99957 * 16 13 11 18 18 C 1.50706 * 109.46984 * 180.02562 * 17 16 13 19 19 O 1.21295 * 119.99863 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00080 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99873 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99509 * 359.71860 * 21 20 18 23 23 C 1.38950 * 120.00048 * 179.72298 * 21 20 18 24 24 N 1.31404 * 119.99928 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99705 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47292 * 90.00321 * 25 23 21 27 27 H 1.48504 * 109.46709 * 209.99863 * 25 23 21 28 28 H 1.48496 * 109.47395 * 329.99874 * 25 23 21 29 29 C 1.47149 * 120.98378 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.47099 * 60.00118 * 1 2 3 31 31 H 1.08995 * 109.47571 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46956 * 300.00342 * 1 2 3 33 33 H 1.09001 * 109.46956 * 239.99658 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99882 * 2 1 3 35 35 H 1.08994 * 109.47505 * 60.00041 * 4 3 2 36 36 H 1.09001 * 109.47267 * 299.99064 * 4 3 2 37 37 H 1.08997 * 109.68140 * 350.27108 * 8 7 5 38 38 H 1.08996 * 109.68417 * 110.83607 * 8 7 5 39 39 H 1.08999 * 109.51736 * 67.62347 * 9 8 7 40 40 H 1.08994 * 109.51567 * 187.77530 * 9 8 7 41 41 H 1.09003 * 109.46935 * 60.00548 * 15 13 11 42 42 H 1.08999 * 109.46748 * 180.02562 * 15 13 11 43 43 H 1.09000 * 109.47218 * 299.99782 * 15 13 11 44 44 H 1.00890 * 111.00276 * 278.95765 * 16 13 11 45 45 H 1.09004 * 109.47320 * 60.00702 * 17 16 13 46 46 H 1.09001 * 109.47291 * 299.99999 * 17 16 13 47 47 H 0.96996 * 119.99858 * 359.72084 * 20 18 17 48 48 H 0.96999 * 119.99865 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.67915 * 9.72086 * 29 7 5 50 50 H 1.08996 * 109.71267 * 249.18694 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7727 -0.0016 7 7 5.1211 3.2661 -0.0013 8 6 6.1803 2.2445 -0.0002 9 6 7.1696 2.5751 1.1231 10 8 7.5972 3.9328 0.9894 11 6 6.5462 4.8930 1.1214 12 1 6.0566 4.7674 2.0871 13 6 7.1284 6.3045 1.0232 14 1 6.3414 7.0357 1.2078 15 6 8.2358 6.4731 2.0654 16 7 7.6848 6.5124 -0.3204 17 6 7.7061 7.9399 -0.6662 18 6 8.2813 8.1135 -2.0483 19 8 8.6388 7.1434 -2.6826 20 7 8.3995 9.3466 -2.5791 21 6 8.9223 9.5044 -3.8367 22 1 9.2436 8.6409 -4.4001 23 6 9.0388 10.7753 -4.3862 24 7 9.5404 10.9266 -5.5913 25 14 8.4825 12.2688 -3.4118 26 1 9.6175 12.7843 -2.6048 27 1 8.0197 13.3255 -4.3469 28 1 7.3679 11.8838 -2.5091 29 6 5.5250 4.6811 -0.0024 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8333 0.9766 -0.8907 36 1 3.8340 0.9764 0.8892 37 1 5.7422 1.2618 0.1740 38 1 6.6981 2.2516 -0.9593 39 1 6.6825 2.4403 2.0888 40 1 8.0329 1.9132 1.0545 41 1 9.0228 5.7418 1.8809 42 1 8.6502 7.4788 1.9958 43 1 7.8229 6.3189 3.0624 44 1 8.6059 6.1080 -0.3969 45 1 8.3214 8.4791 0.0541 46 1 6.6903 8.3345 -0.6436 47 1 8.1106 10.1221 -2.0731 48 1 9.6214 11.8137 -5.9751 49 1 4.6529 5.3119 0.1702 50 1 5.9766 4.9338 -0.9616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725326340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:27 Heat of formation + Delta-G solvation = -173.790957 kcal Electronic energy + Delta-G solvation = -30649.367175 eV Core-core repulsion = 26290.298291 eV Total energy + Delta-G solvation = -4359.068884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50924 -40.36645 -39.76254 -38.54725 -37.42232 -35.98252 -35.75169 -33.75870 -32.99180 -32.39433 -30.84096 -29.73164 -28.08498 -27.77090 -25.59489 -24.90023 -23.71388 -23.60409 -21.49496 -21.27108 -20.37093 -20.25589 -18.55315 -17.93769 -17.85225 -17.49323 -17.28269 -17.01410 -16.73583 -16.45497 -16.32098 -16.08480 -15.80355 -15.44920 -15.23281 -15.02597 -14.84405 -14.62497 -14.44442 -14.16663 -13.95921 -13.86224 -13.78504 -13.42460 -13.28241 -13.06770 -12.98844 -12.74751 -12.58769 -12.41528 -12.40730 -12.33317 -12.18337 -11.98984 -11.86884 -11.62514 -11.50398 -11.12532 -10.80492 -10.69370 -10.41603 -10.24065 -9.67478 -9.19638 -8.40994 -6.01521 1.30413 1.35265 1.44309 1.45125 1.58909 1.97631 2.23077 2.72229 2.78552 2.82596 3.15778 3.40969 3.46468 3.72247 3.89663 3.99163 4.05389 4.13163 4.13733 4.19125 4.21741 4.26255 4.30511 4.34456 4.39330 4.44428 4.49716 4.51165 4.58265 4.59811 4.74984 4.82787 4.87182 4.94408 5.00469 5.01826 5.11240 5.25418 5.31125 5.37140 5.53400 5.91330 6.03967 6.06344 6.28354 6.30893 6.43488 6.60781 6.89034 7.03071 7.40959 7.98002 8.76737 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002171 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.816613 B =12893.071159 C =13898.813685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.050 3.950 5 C 0.506 3.494 6 O -0.577 6.577 7 N -0.613 5.613 8 C 0.066 3.934 9 C 0.045 3.955 10 O -0.382 6.382 11 C 0.105 3.895 12 H 0.076 0.924 13 C 0.092 3.908 14 H 0.104 0.896 15 C -0.169 4.169 16 N -0.672 5.672 17 C 0.061 3.939 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.233 1.233 29 C 0.090 3.910 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.348 0.652 45 H 0.079 0.921 46 H 0.111 0.889 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.076 0.924 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -21.036 22.833 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.325 6.325 4 C -0.029 4.029 5 C 0.295 3.705 6 O -0.456 6.456 7 N -0.348 5.348 8 C -0.056 4.056 9 C -0.032 4.032 10 O -0.301 6.301 11 C 0.046 3.954 12 H 0.093 0.907 13 C -0.019 4.019 14 H 0.122 0.878 15 C -0.228 4.228 16 N -0.305 5.305 17 C -0.071 4.071 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.234 5.234 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.156 1.156 29 C -0.032 4.032 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.168 0.832 45 H 0.097 0.903 46 H 0.129 0.871 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.588 -21.041 21.874 32.488 hybrid contribution 0.582 1.190 -0.026 1.325 sum -11.006 -19.851 21.848 31.504 Atomic orbital electron populations 1.21790 0.93467 1.03507 1.02313 1.22793 0.96099 0.81830 1.01923 1.87995 1.19691 1.29004 1.95783 1.22335 0.83523 0.91858 1.05135 1.21061 0.81828 0.92093 0.75542 1.90699 1.50302 1.53638 1.51000 1.48255 1.05435 1.08091 1.72971 1.22787 0.89198 0.92260 1.01372 1.23175 0.99416 0.83548 0.97054 1.88004 1.33234 1.15528 1.93336 1.22390 0.87450 0.89231 0.96320 0.90665 1.21696 0.98141 0.94693 0.87338 0.87760 1.22310 0.98950 1.02009 0.99534 1.60120 1.31325 1.12476 1.26566 1.21676 1.02548 0.91295 0.91621 1.21011 0.82636 0.82495 0.90120 1.90546 1.54286 1.40253 1.64603 1.42043 1.58050 1.07727 1.15614 1.19004 1.39395 0.94763 0.92506 0.92723 1.26119 0.96792 1.01446 0.97137 1.69804 1.45621 1.25121 1.17025 0.85362 0.80106 0.77166 0.78868 1.17972 1.20136 1.15588 1.22161 0.98274 0.81539 1.01263 0.93104 0.88425 0.92679 0.91629 0.91004 0.87759 0.86698 0.85457 0.90557 0.91436 0.85271 0.92223 0.92243 0.90568 0.83202 0.90315 0.87123 0.77524 0.91192 0.90507 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.59 6.66 71.98 0.48 1.07 16 3 O -0.41 -8.60 9.88 -129.94 -1.28 -9.88 16 4 C 0.05 0.77 4.79 71.24 0.34 1.12 16 5 C 0.51 12.59 7.79 87.66 0.68 13.27 16 6 O -0.58 -20.71 15.97 16.02 0.26 -20.46 16 7 N -0.61 -13.18 3.02 -817.30 -2.47 -15.65 16 8 C 0.07 0.85 6.54 86.35 0.56 1.41 16 9 C 0.05 0.54 6.98 72.08 0.50 1.05 16 10 O -0.38 -7.65 9.46 -148.98 -1.41 -9.06 16 11 C 0.11 2.15 2.66 30.70 0.08 2.23 16 12 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 13 C 0.09 1.90 2.50 44.92 0.11 2.01 16 14 H 0.10 1.90 7.80 -2.39 -0.02 1.88 16 15 C -0.17 -2.93 8.97 71.98 0.65 -2.29 16 16 N -0.67 -19.52 4.72 -495.55 -2.34 -21.86 16 17 C 0.06 1.85 5.97 85.56 0.51 2.36 16 18 C 0.45 20.50 7.82 87.66 0.69 21.18 16 19 O -0.61 -34.35 15.78 -3.08 -0.05 -34.40 16 20 N -0.59 -28.35 5.09 -306.97 -1.56 -29.91 16 21 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16 22 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.93 -57.17 13.96 21.66 0.30 -56.87 16 25 Si 0.97 39.48 27.74 68.60 1.90 41.38 16 26 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 27 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 29 C 0.09 2.34 5.83 86.36 0.50 2.84 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 1.07 8.02 -2.39 -0.02 1.05 16 36 H 0.12 0.87 7.66 -2.39 -0.02 0.85 16 37 H 0.13 0.60 6.05 -2.39 -0.01 0.58 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.17 7.55 -2.39 -0.02 1.15 16 42 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.35 11.28 8.17 -89.70 -0.73 10.54 16 45 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 46 H 0.11 2.91 8.06 -2.39 -0.02 2.89 16 47 H 0.39 15.44 5.76 -92.71 -0.53 14.90 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.08 2.24 7.08 -2.38 -0.02 2.22 16 50 H 0.07 2.38 7.25 -2.39 -0.02 2.36 16 Total: -1.00 -89.72 404.19 0.15 -89.57 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -0.37 Total: 41.05 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 7.17 Total: 26.08 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -6.07 Total: -124.29 kcal Atomic # 8 Polarization: -71.31 SS G_CDS: -2.49 Total: -73.79 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -89.72 0.15 -89.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725326340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.219 kcal (2) G-P(sol) polarization free energy of solvation -89.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds