Wall clock time and date at job start Wed Apr 1 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99603 * 2 1 4 4 C 1.53001 * 109.47188 * 269.99779 * 3 2 1 5 5 H 1.09006 * 109.46586 * 60.00575 * 4 3 2 6 6 O 1.42899 * 109.47252 * 300.00391 * 4 3 2 7 7 C 1.52994 * 109.46973 * 180.02562 * 4 3 2 8 8 N 1.46499 * 109.47430 * 185.00433 * 7 4 3 9 9 C 1.36929 * 120.00434 * 180.02562 * 8 7 4 10 10 H 1.08000 * 119.99961 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00162 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00123 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00174 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47523 * 89.99187 * 13 11 9 15 15 H 1.48501 * 109.47219 * 209.99906 * 13 11 9 16 16 H 1.48510 * 109.47031 * 329.99650 * 13 11 9 17 17 C 1.34768 * 119.99918 * 180.02562 * 2 1 3 18 18 O 1.21286 * 119.99610 * 180.02562 * 17 2 1 19 19 C 1.50701 * 120.00462 * 359.97438 * 17 2 1 20 20 C 1.53000 * 109.47346 * 180.02562 * 19 17 2 21 21 C 1.52998 * 109.47137 * 180.02562 * 20 19 17 22 22 H 1.08998 * 110.67785 * 52.02826 * 21 20 19 23 23 C 1.54991 * 110.61844 * 174.99995 * 21 20 19 24 24 C 1.54817 * 102.09285 * 155.52077 * 23 21 20 25 25 C 1.54096 * 104.18822 * 339.11830 * 24 23 21 26 26 H 1.08997 * 109.88493 * 117.39400 * 25 24 23 27 27 C 1.50698 * 109.87721 * 238.54829 * 25 24 23 28 28 N 1.34774 * 120.00021 * 294.99603 * 27 25 24 29 29 O 1.21288 * 120.00454 * 115.00094 * 27 25 24 30 30 O 1.43749 * 107.29556 * 357.96748 * 25 24 23 31 31 H 1.08993 * 109.47363 * 269.99755 * 1 2 3 32 32 H 1.09002 * 109.47490 * 30.00019 * 1 2 3 33 33 H 1.09004 * 109.46966 * 149.99551 * 1 2 3 34 34 H 1.08998 * 109.46926 * 30.00234 * 3 2 1 35 35 H 1.08998 * 109.46618 * 149.99970 * 3 2 1 36 36 H 0.96698 * 113.99569 * 300.00317 * 6 4 3 37 37 H 1.09004 * 109.47425 * 305.00356 * 7 4 3 38 38 H 1.09001 * 109.47199 * 65.00469 * 7 4 3 39 39 H 0.97003 * 119.99313 * 359.97438 * 8 7 4 40 40 H 0.96996 * 119.99974 * 180.02562 * 12 11 9 41 41 H 1.08996 * 109.46843 * 59.99866 * 19 17 2 42 42 H 1.09004 * 109.46756 * 299.99825 * 19 17 2 43 43 H 1.08996 * 109.47500 * 59.99352 * 20 19 17 44 44 H 1.09004 * 109.46675 * 299.99415 * 20 19 17 45 45 H 1.08996 * 110.90945 * 37.32016 * 23 21 20 46 46 H 1.09004 * 110.90588 * 273.71282 * 23 21 20 47 47 H 1.09004 * 110.48829 * 97.79579 * 24 23 21 48 48 H 1.09002 * 110.48570 * 220.30390 * 24 23 21 49 49 H 0.97003 * 119.99995 * 0.02562 * 28 27 25 50 50 H 0.97006 * 120.00265 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2248 0.7146 -2.1161 7 6 3.2179 3.0352 -1.4424 8 7 3.3579 3.5185 -2.8183 9 6 4.0129 4.6948 -3.0676 10 1 4.4261 5.2666 -2.2498 11 6 4.1459 5.1524 -4.3714 12 7 4.7752 6.2834 -4.6109 13 14 3.4307 4.1639 -5.7857 14 1 2.0340 4.6004 -6.0384 15 1 4.2469 4.3846 -7.0065 16 1 3.4426 2.7204 -5.4367 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1671 -0.0001 19 6 1.3854 -2.4723 -0.0005 20 6 2.3797 -3.6352 -0.0005 21 6 1.6148 -4.9602 -0.0012 22 1 0.8792 -4.9796 -0.8053 23 6 2.5935 -6.1554 -0.1276 24 6 1.7821 -7.3081 0.5125 25 6 0.7327 -6.5923 1.3849 26 1 -0.2694 -6.8235 1.0239 27 6 0.8765 -7.0280 2.8203 28 7 0.6332 -8.3083 3.1636 29 8 1.2112 -6.2264 3.6668 30 8 0.9778 -5.1801 1.2759 31 1 -0.3634 0.0000 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6083 2.0284 0.5139 35 1 3.1499 1.1385 0.5138 36 1 4.0872 0.5462 -1.7125 37 1 2.6709 3.7709 -0.8528 38 1 4.2062 2.8838 -1.0083 39 1 2.9871 3.0047 -3.5528 40 1 4.8678 6.6033 -5.5219 41 1 0.7585 -2.5298 -0.8902 42 1 0.7592 -2.5302 0.8898 43 1 3.0065 -3.5774 0.8893 44 1 3.0063 -3.5774 -0.8906 45 1 3.5104 -5.9681 0.4311 46 1 2.8136 -6.3688 -1.1736 47 1 1.2944 -7.9052 -0.2581 48 1 2.4289 -7.9345 1.1268 49 1 0.3659 -8.9496 2.4866 50 1 0.7261 -8.5889 4.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725698367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:37 Heat of formation + Delta-G solvation = -158.697952 kcal Electronic energy + Delta-G solvation = -30214.185406 eV Core-core repulsion = 25855.771004 eV Total energy + Delta-G solvation = -4358.414402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81428 -39.99641 -38.76839 -37.38559 -35.27337 -34.37726 -34.11075 -33.79883 -32.49056 -31.44057 -30.17878 -29.06239 -27.00000 -26.15070 -24.63949 -22.87149 -22.09683 -21.39270 -21.17705 -21.00524 -19.12556 -18.29332 -17.67058 -17.42537 -17.30826 -16.79794 -16.51600 -16.17499 -15.81910 -15.27773 -15.17247 -14.94952 -14.52043 -14.45730 -14.27091 -13.97608 -13.74563 -13.55497 -13.32071 -13.17904 -12.77907 -12.64726 -12.42515 -12.28567 -12.25456 -12.20420 -11.96114 -11.56981 -11.51561 -11.29150 -11.19344 -11.11792 -10.82758 -10.75430 -10.57637 -10.22558 -10.13664 -9.96800 -9.88169 -9.63048 -9.51390 -8.87418 -8.50558 -7.19139 -5.73028 -3.08150 2.10624 2.64876 2.70571 2.95918 3.42858 3.49852 3.49906 3.51093 3.90467 4.15368 4.24026 4.33082 4.49544 4.63172 4.64767 4.71103 4.77350 4.86532 4.91625 4.95703 5.02711 5.05486 5.15681 5.20960 5.28624 5.32764 5.36708 5.41835 5.53683 5.56401 5.58698 5.63845 5.70138 5.76704 5.87832 6.00093 6.01953 6.19894 6.38298 6.45005 6.49875 6.68938 6.77769 7.36282 7.75185 8.01465 8.12378 8.23817 8.45972 9.25982 9.98404 10.18975 11.45208 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.001796 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.636781 B =15587.083325 C =16072.592626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.084 3.916 4 C 0.083 3.917 5 H 0.094 0.906 6 O -0.552 6.552 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.935 5.935 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.520 3.480 18 O -0.537 6.537 19 C -0.136 4.136 20 C -0.096 4.096 21 C 0.074 3.926 22 H 0.077 0.923 23 C -0.150 4.150 24 C -0.148 4.148 25 C 0.060 3.940 26 H 0.095 0.905 27 C 0.515 3.485 28 N -0.855 5.855 29 O -0.519 6.519 30 O -0.342 6.342 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.377 0.623 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.365 0.635 40 H 0.259 0.741 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.401 0.599 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 -34.060 13.125 39.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.039 4.039 4 C 0.022 3.978 5 H 0.112 0.888 6 O -0.358 6.358 7 C 0.001 3.999 8 N -0.395 5.395 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.714 3.286 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.198 1.198 17 C 0.308 3.692 18 O -0.414 6.414 19 C -0.176 4.176 20 C -0.134 4.134 21 C 0.017 3.983 22 H 0.094 0.906 23 C -0.187 4.187 24 C -0.186 4.186 25 C -0.002 4.002 26 H 0.113 0.887 27 C 0.298 3.702 28 N -0.422 5.422 29 O -0.392 6.392 30 O -0.260 6.260 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.225 0.775 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.198 0.802 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.229 0.771 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -13.556 -32.998 13.353 38.092 hybrid contribution -0.302 -1.081 -0.808 1.383 sum -13.859 -34.079 12.545 38.869 Atomic orbital electron populations 1.21810 0.79640 1.03415 1.01720 1.47715 1.06802 1.06073 1.73949 1.22212 0.98503 0.84911 0.98274 1.22526 0.95506 0.88260 0.91497 0.88839 1.86492 1.33372 1.59054 1.56876 1.21223 0.97455 0.92559 0.88625 1.42587 1.69256 1.25680 1.01986 1.19065 1.28046 0.96393 0.93984 0.89305 1.24660 1.00408 0.97095 0.96953 1.69710 1.47221 1.21577 1.19759 0.86538 0.78746 0.80390 0.82966 1.21180 1.21764 1.19847 1.20553 0.88039 0.85189 0.75387 1.90658 1.13994 1.87290 1.49428 1.21654 0.99455 0.92180 1.04320 1.21377 0.97142 0.90115 1.04765 1.23340 0.93551 0.95544 0.85873 0.90558 1.23185 0.99473 0.93750 1.02332 1.22943 0.97441 0.98905 0.99265 1.22575 1.00364 0.84655 0.92638 0.88714 1.20553 0.76565 0.82317 0.90738 1.43786 1.73474 1.10854 1.14051 1.90803 1.44736 1.52123 1.51551 1.89044 1.80310 1.19533 1.37153 0.92535 0.90848 0.91047 0.89615 0.89356 0.77522 0.94880 0.95256 0.80170 0.93099 0.89096 0.88525 0.89978 0.89334 0.89783 0.89388 0.89420 0.89996 0.77075 0.76407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.25 16 2 N -0.61 -7.27 2.83 -181.57 -0.51 -7.78 16 3 C 0.08 1.10 5.15 -4.04 -0.02 1.08 16 4 C 0.08 1.34 3.27 -26.73 -0.09 1.25 16 5 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 6 O -0.55 -9.99 12.09 -43.97 -0.53 -10.52 16 7 C 0.13 2.55 5.90 -4.05 -0.02 2.53 16 8 N -0.75 -18.66 5.35 -59.91 -0.32 -18.98 16 9 C -0.25 -7.20 10.47 -15.06 -0.16 -7.35 16 10 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 12 N -0.93 -30.09 13.97 55.49 0.78 -29.31 16 13 Si 0.88 23.02 27.74 -169.99 -4.71 18.31 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 16 H -0.27 -6.90 6.52 56.52 0.37 -6.53 16 17 C 0.52 6.80 7.18 -10.99 -0.08 6.72 16 18 O -0.54 -8.78 14.35 -3.19 -0.05 -8.83 16 19 C -0.14 -1.30 4.20 -27.88 -0.12 -1.42 16 20 C -0.10 -0.92 4.26 -26.73 -0.11 -1.03 16 21 C 0.07 0.55 3.29 -25.68 -0.08 0.46 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 23 C -0.15 -0.86 6.59 -24.72 -0.16 -1.02 16 24 C -0.15 -0.59 6.61 -25.20 -0.17 -0.75 16 25 C 0.06 0.37 3.84 -27.31 -0.10 0.27 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 C 0.51 4.12 7.22 -10.99 -0.08 4.04 16 28 N -0.86 -2.75 8.85 31.22 0.28 -2.47 16 29 O -0.52 -7.07 17.36 -14.02 -0.24 -7.31 16 30 O -0.34 -3.31 10.30 -54.81 -0.56 -3.87 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 34 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.09 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.38 6.50 8.45 45.56 0.38 6.88 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.37 9.13 5.53 -40.82 -0.23 8.90 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.09 0.71 7.40 -51.93 -0.38 0.32 16 42 H 0.10 0.88 8.03 -51.93 -0.42 0.47 16 43 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 44 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.08 0.58 8.06 -51.93 -0.42 0.17 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 48 H 0.08 0.30 7.70 -51.93 -0.40 -0.10 16 49 H 0.40 -0.08 8.83 -40.82 -0.36 -0.44 16 50 H 0.40 1.07 8.93 -40.82 -0.36 0.70 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -40.71 407.92 -7.97 -48.68 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.56 Total: 9.88 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.68 Total: 6.06 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.22 Total: -58.54 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.39 Total: -30.53 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -40.71 -7.97 -48.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725698367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.016 kcal (2) G-P(sol) polarization free energy of solvation -40.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds