Wall clock time and date at job start Wed Apr 1 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00298 * 2 1 4 4 H 1.09003 * 109.47034 * 29.99998 * 3 2 1 5 5 C 1.50699 * 109.47483 * 270.00329 * 3 2 1 6 6 O 1.21288 * 119.99441 * 354.99472 * 5 3 2 7 7 N 1.34770 * 120.00299 * 174.99975 * 5 3 2 8 8 C 1.46502 * 119.99868 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.46834 * 179.97438 * 8 7 5 10 10 N 1.46898 * 109.47048 * 180.02562 * 9 8 7 11 11 C 1.46906 * 110.99888 * 293.95182 * 10 9 8 12 12 C 1.46902 * 111.00283 * 170.00220 * 10 9 8 13 13 C 1.50699 * 109.47144 * 190.00178 * 12 10 9 14 14 O 1.21287 * 120.00180 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00069 * 179.97438 * 13 12 10 16 16 C 1.37095 * 120.00229 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99928 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00062 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00225 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99933 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47153 * 90.00210 * 20 18 16 22 22 H 1.48500 * 109.47164 * 210.00191 * 20 18 16 23 23 H 1.48500 * 109.47172 * 330.00192 * 20 18 16 24 24 C 1.52997 * 109.47249 * 149.99953 * 3 2 1 25 25 H 1.09003 * 110.75015 * 179.30185 * 24 3 2 26 26 C 1.55306 * 110.85250 * 302.77302 * 24 3 2 27 27 C 1.55198 * 100.82843 * 152.17558 * 26 24 3 28 28 O 1.43646 * 105.26480 * 323.82254 * 27 26 24 29 29 C 1.43232 * 109.96968 * 24.28011 * 28 27 26 30 30 H 1.08993 * 109.47301 * 60.00135 * 1 2 3 31 31 H 1.09003 * 109.47394 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47365 * 299.99805 * 1 2 3 33 33 H 0.97003 * 120.00112 * 359.97438 * 7 5 3 34 34 H 1.09001 * 109.47127 * 60.00090 * 8 7 5 35 35 H 1.08993 * 109.47024 * 299.99732 * 8 7 5 36 36 H 1.08992 * 109.47640 * 60.00030 * 9 8 7 37 37 H 1.09003 * 109.47148 * 299.99747 * 9 8 7 38 38 H 1.09001 * 109.46544 * 60.00058 * 11 10 9 39 39 H 1.09001 * 109.47272 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47033 * 300.00113 * 11 10 9 41 41 H 1.09001 * 109.46557 * 309.99495 * 12 10 9 42 42 H 1.08994 * 109.47575 * 69.99497 * 12 10 9 43 43 H 0.97002 * 119.99460 * 359.97438 * 15 13 12 44 44 H 0.96993 * 120.00024 * 179.97438 * 19 18 16 45 45 H 1.08995 * 111.12631 * 270.24826 * 26 24 3 46 46 H 1.09009 * 111.12195 * 34.40317 * 26 24 3 47 47 H 1.09007 * 110.36944 * 204.79820 * 27 26 24 48 48 H 1.09002 * 110.20914 * 82.76064 * 27 26 24 49 49 H 1.08996 * 109.83429 * 238.78012 * 29 28 27 50 50 H 1.08998 * 109.90769 * 117.84659 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0124 -1.6685 8 6 2.8580 3.4583 -3.0497 9 6 3.3627 4.9027 -3.0515 10 7 3.5618 5.3501 -4.4365 11 6 4.6477 4.5996 -5.0812 12 6 3.8163 6.7958 -4.4913 13 6 3.7711 7.2598 -5.9244 14 8 3.5492 6.4644 -6.8127 15 7 3.9772 8.5588 -6.2190 16 6 3.9367 8.9809 -7.5227 17 1 3.7399 8.2724 -8.3137 18 6 4.1497 10.3199 -7.8264 19 7 4.1114 10.7244 -9.0761 20 14 4.4907 11.5451 -6.4582 21 1 5.9540 11.6238 -6.2175 22 1 3.9815 12.8829 -6.8535 23 1 3.8078 11.1027 -5.2160 24 6 3.3588 1.2631 0.7212 25 1 3.8270 2.2475 0.7226 26 6 3.1946 0.7272 2.1696 27 6 4.5940 0.1001 2.4088 28 8 4.9788 -0.4600 1.1433 29 6 4.2914 0.2121 0.0816 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.8468 3.6154 -0.9323 34 1 1.9124 3.4036 -3.5891 35 1 3.5917 2.8161 -3.5366 36 1 4.3081 4.9579 -2.5121 37 1 2.6285 5.5447 -2.5647 38 1 4.4009 3.5380 -5.0888 39 1 4.7736 4.9504 -6.1055 40 1 5.5740 4.7533 -4.5276 41 1 3.0543 7.3209 -3.9153 42 1 4.7995 7.0079 -4.0715 43 1 4.1543 9.1950 -5.5084 44 1 4.2597 11.6592 -9.2880 45 1 2.9998 1.5397 2.8694 46 1 2.4121 -0.0299 2.2219 47 1 4.5350 -0.6815 3.1664 48 1 5.3040 0.8689 2.7139 49 1 3.7027 -0.5052 -0.4903 50 1 5.0105 0.7051 -0.5726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731778425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:26 Heat of formation + Delta-G solvation = -173.887391 kcal Electronic energy + Delta-G solvation = -30209.902510 eV Core-core repulsion = 25850.829445 eV Total energy + Delta-G solvation = -4359.073066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56122 -40.52441 -39.96253 -38.56774 -37.98751 -36.05514 -35.58492 -33.96874 -33.73908 -31.26297 -30.39967 -29.21407 -28.12732 -27.25292 -26.64502 -25.00814 -23.58537 -22.34092 -22.27488 -21.27818 -21.11850 -20.16495 -18.61419 -18.24175 -17.72658 -17.67673 -17.18200 -16.82748 -16.74656 -16.73742 -16.13639 -16.00899 -15.84278 -15.58639 -15.38089 -15.26853 -14.94349 -14.76400 -14.43380 -14.29841 -14.20212 -14.06055 -13.74350 -13.69965 -13.09254 -12.95183 -12.77375 -12.59836 -12.57353 -12.55121 -12.37908 -12.27947 -12.12394 -11.96464 -11.87330 -11.76148 -11.60281 -11.45138 -10.51425 -10.41285 -10.33446 -10.21807 -10.16271 -9.23887 -8.39499 -6.00518 1.31177 1.37447 1.46441 1.47626 1.86193 1.98753 2.24997 2.63002 2.78168 2.93558 3.16781 3.25093 3.33585 3.58700 3.78703 3.86389 3.89509 4.07466 4.13459 4.14478 4.28137 4.30910 4.36081 4.40454 4.44997 4.46768 4.47799 4.54101 4.62097 4.63066 4.75611 4.83102 4.85874 4.87455 4.92950 4.95322 4.98765 5.20973 5.26574 5.31959 5.54692 5.88203 5.95420 5.99883 6.04361 6.15438 6.50934 6.61904 6.90987 7.18823 7.42276 8.00808 8.78323 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.001758 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.263202 B =15926.593629 C =16324.554391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.088 3.912 4 H 0.132 0.868 5 C 0.484 3.516 6 O -0.574 6.574 7 N -0.707 5.707 8 C 0.127 3.873 9 C 0.054 3.946 10 N -0.544 5.544 11 C 0.024 3.976 12 C 0.058 3.942 13 C 0.448 3.552 14 O -0.608 6.608 15 N -0.592 5.592 16 C -0.327 4.327 17 H 0.052 0.948 18 C -0.019 4.019 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.277 1.277 23 H -0.227 1.227 24 C -0.110 4.110 25 H 0.133 0.867 26 C -0.137 4.137 27 C 0.040 3.960 28 O -0.412 6.412 29 C 0.055 3.945 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.420 0.580 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.127 0.873 42 H 0.085 0.915 43 H 0.390 0.610 44 H 0.278 0.722 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -13.442 34.888 37.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.027 3.973 4 H 0.149 0.851 5 C 0.270 3.730 6 O -0.453 6.453 7 N -0.363 5.363 8 C 0.003 3.997 9 C -0.074 4.074 10 N -0.269 5.269 11 C -0.124 4.124 12 C -0.073 4.073 13 C 0.236 3.764 14 O -0.492 6.492 15 N -0.234 5.234 16 C -0.456 4.456 17 H 0.070 0.930 18 C -0.217 4.217 19 N -0.578 5.578 20 Si 0.787 3.213 21 H -0.182 1.182 22 H -0.203 1.203 23 H -0.150 1.150 24 C -0.129 4.129 25 H 0.151 0.849 26 C -0.174 4.174 27 C -0.036 4.036 28 O -0.332 6.332 29 C -0.021 4.021 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.258 0.742 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.145 0.855 42 H 0.103 0.897 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.138 0.862 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.885 -14.808 33.196 36.463 hybrid contribution 0.610 1.345 -0.193 1.489 sum -2.275 -13.463 33.002 35.715 Atomic orbital electron populations 1.23018 0.79275 1.04097 1.00741 1.87984 1.21521 1.25748 1.94211 1.22031 0.97456 0.87522 0.90334 0.85079 1.21965 0.76449 0.81646 0.92949 1.90746 1.51579 1.55121 1.47835 1.45753 1.67199 1.14250 1.09052 1.21104 1.00740 0.95087 0.82807 1.22260 1.02152 0.94700 0.88241 1.61292 1.45260 1.03002 1.17359 1.22454 0.91565 0.98489 0.99915 1.21834 1.03871 0.89333 0.92255 1.21003 0.81139 0.81922 0.92331 1.90534 1.53396 1.54342 1.50961 1.42018 1.65741 1.08498 1.07124 1.18979 1.48114 0.94484 0.84059 0.92965 1.26171 0.96451 0.99087 0.99997 1.69815 1.49825 1.17903 1.20230 0.85332 0.79889 0.77415 0.78652 1.18186 1.20261 1.14977 1.22951 0.92365 1.01627 0.95947 0.84922 1.23330 0.97622 1.02231 0.94264 1.23674 0.95502 0.98781 0.85597 1.88391 1.67723 1.60906 1.16190 1.23062 0.94217 0.94646 0.90219 0.95111 0.88692 0.90793 0.74217 0.92933 0.92910 0.91499 0.87628 0.91295 0.92930 0.94132 0.85530 0.89708 0.77409 0.91225 0.86155 0.90077 0.88998 0.90547 0.92922 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.81 113.37 1.23 1.53 16 2 O -0.38 -6.49 8.02 -129.99 -1.04 -7.54 16 3 C 0.09 1.03 2.31 29.85 0.07 1.10 16 4 H 0.13 0.52 7.79 -2.39 -0.02 0.50 16 5 C 0.48 9.18 6.62 87.66 0.58 9.76 16 6 O -0.57 -17.72 16.51 15.94 0.26 -17.46 16 7 N -0.71 -9.43 5.52 -463.06 -2.55 -11.99 16 8 C 0.13 2.54 5.60 86.38 0.48 3.02 16 9 C 0.05 0.90 5.07 86.30 0.44 1.33 16 10 N -0.54 -15.13 4.50 -927.05 -4.17 -19.31 16 11 C 0.02 0.71 8.96 127.69 1.14 1.86 16 12 C 0.06 1.61 5.45 85.56 0.47 2.08 16 13 C 0.45 19.67 7.48 87.66 0.66 20.33 16 14 O -0.61 -33.47 13.91 -3.05 -0.04 -33.51 16 15 N -0.59 -27.15 5.09 -306.99 -1.56 -28.72 16 16 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 17 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 18 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 19 N -0.94 -56.49 13.96 21.66 0.30 -56.19 16 20 Si 0.97 37.82 27.74 68.60 1.90 39.72 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 24 C -0.11 -0.99 2.86 -9.53 -0.03 -1.02 16 25 H 0.13 0.36 7.99 -2.39 -0.02 0.34 16 26 C -0.14 -0.84 6.58 32.14 0.21 -0.63 16 27 C 0.04 0.41 7.78 72.74 0.57 0.97 16 28 O -0.41 -8.10 11.36 -148.98 -1.69 -9.79 16 29 C 0.06 0.99 6.78 72.45 0.49 1.48 16 30 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 33 H 0.42 1.83 8.32 -92.71 -0.77 1.06 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.27 6.55 -2.39 -0.02 1.26 16 36 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 37 H 0.11 1.26 7.93 -2.39 -0.02 1.24 16 38 H 0.07 1.96 6.47 -2.39 -0.02 1.94 16 39 H 0.05 2.08 5.82 -2.39 -0.01 2.07 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.13 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 43 H 0.39 14.48 5.76 -92.71 -0.53 13.94 16 44 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.08 0.69 7.33 -2.38 -0.02 0.68 16 47 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.05 1.27 7.10 -2.39 -0.02 1.26 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -91.66 403.44 -1.38 -93.04 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.40 Total: 28.66 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 7.62 Total: 23.07 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -7.99 Total: -116.20 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -2.51 Total: -68.30 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.90 Total: 39.72 kcal Total: -91.66 -1.38 -93.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731778425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.845 kcal (2) G-P(sol) polarization free energy of solvation -91.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds