Wall clock time and date at job start Wed Apr 1 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 N 1.46893 * 109.47254 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99942 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00323 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00319 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99824 * 359.97438 * 11 10 8 13 13 C 1.38943 * 120.00335 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00254 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00037 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46797 * 59.99810 * 15 13 11 17 17 H 1.48493 * 109.47020 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47075 * 299.99971 * 15 13 11 19 19 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 20 20 C 1.34773 * 119.99910 * 84.99768 * 19 2 1 21 21 O 1.21279 * 120.00033 * 0.02562 * 20 19 2 22 22 C 1.50699 * 119.99928 * 180.02562 * 20 19 2 23 23 C 1.53002 * 109.47295 * 180.02562 * 22 20 19 24 24 O 1.42963 * 109.47308 * 294.99835 * 23 22 20 25 25 C 1.43087 * 113.77524 * 181.20235 * 24 23 22 26 26 C 1.53269 * 108.94075 * 57.96948 * 25 24 23 27 27 C 1.53261 * 108.84470 * 305.48126 * 26 25 24 28 28 O 1.42971 * 109.47359 * 174.99991 * 23 22 20 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 33 33 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 34 34 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 35 35 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 36 36 H 1.00905 * 111.00048 * 303.94961 * 6 5 4 37 37 H 1.08997 * 109.46771 * 299.99632 * 7 6 5 38 38 H 1.09000 * 109.46946 * 59.99495 * 7 6 5 39 39 H 0.97001 * 120.00706 * 0.02562 * 10 8 7 40 40 H 0.97005 * 120.00353 * 180.02562 * 14 13 11 41 41 H 0.97003 * 119.99995 * 265.00643 * 19 2 1 42 42 H 1.08999 * 109.47104 * 300.00397 * 22 20 19 43 43 H 1.09000 * 109.47712 * 60.00108 * 22 20 19 44 44 H 1.08995 * 109.46997 * 54.99926 * 23 22 20 45 45 H 1.09000 * 109.56123 * 298.13715 * 25 24 23 46 46 H 1.08997 * 109.65307 * 177.86462 * 25 24 23 47 47 H 1.08995 * 109.57373 * 185.67205 * 26 25 24 48 48 H 1.09004 * 109.67650 * 65.35137 * 26 25 24 49 49 H 1.09001 * 109.55429 * 294.68279 * 27 26 25 50 50 H 1.08996 * 109.64382 * 174.41576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 7 4.0546 -1.3063 2.5128 7 6 5.5181 -1.2228 2.6083 8 6 5.9825 -1.9427 3.8481 9 8 5.1739 -2.4727 4.5804 10 7 7.2964 -1.9975 4.1432 11 6 7.7189 -2.6519 5.2714 12 1 6.9988 -3.1232 5.9239 13 6 9.0734 -2.7079 5.5759 14 7 9.9496 -2.1341 4.7823 15 14 9.6490 -3.5991 7.1135 16 1 9.2378 -5.0243 7.0428 17 1 11.1285 -3.5153 7.2096 18 1 9.0382 -2.9665 8.3101 19 7 2.0184 -0.6907 -1.1962 20 6 2.1470 -0.0184 -2.3571 21 8 1.8590 1.1585 -2.4115 22 6 2.6488 -0.7290 -3.5877 23 6 2.7009 0.2543 -4.7588 24 8 1.3753 0.6807 -5.0825 25 6 1.3145 1.5861 -6.1888 26 6 1.9408 0.9147 -7.4161 27 6 3.3545 0.4450 -7.0560 28 8 3.2855 -0.3879 -5.8946 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6055 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0729 0.4260 35 1 3.8532 0.4370 1.3572 36 1 3.6168 -0.9414 3.3455 37 1 5.9666 -1.6859 1.7294 38 1 5.8196 -0.1766 2.6615 39 1 7.9432 -1.5733 3.5578 40 1 10.8953 -2.1736 4.9947 41 1 2.2490 -1.6319 -1.1526 42 1 3.6479 -1.1215 -3.3986 43 1 1.9759 -1.5508 -3.8326 44 1 3.3030 1.1192 -4.4805 45 1 1.8672 2.4942 -5.9480 46 1 0.2752 1.8369 -6.4006 47 1 1.9915 1.6296 -8.2373 48 1 1.3362 0.0581 -7.7143 49 1 3.9844 1.3100 -6.8480 50 1 3.7751 -0.1214 -7.8868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732687929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:36 Heat of formation + Delta-G solvation = -177.983305 kcal Electronic energy + Delta-G solvation = -29531.656560 eV Core-core repulsion = 25172.405882 eV Total energy + Delta-G solvation = -4359.250678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61285 -39.69969 -38.31441 -36.95027 -36.01643 -34.98250 -33.82427 -33.63280 -32.04310 -31.22289 -30.19921 -29.16071 -26.38695 -26.23444 -24.52327 -23.96975 -22.27407 -21.63135 -21.15720 -20.62514 -19.23019 -18.10232 -17.87539 -17.17942 -16.96883 -16.55114 -16.12175 -16.10755 -15.57338 -15.27046 -15.18144 -15.11468 -14.56793 -14.38695 -13.97616 -13.81377 -13.75483 -13.69821 -13.59872 -13.31473 -13.08429 -12.88426 -12.31992 -12.25382 -12.21845 -11.95670 -11.65605 -11.52313 -11.52026 -11.49884 -11.24321 -11.22926 -11.02146 -10.90329 -10.44179 -10.42159 -10.21261 -10.08549 -9.99907 -9.50042 -9.28200 -8.46841 -8.06745 -7.95965 -6.41531 -3.82538 2.44072 2.65421 3.20325 3.25971 3.26038 3.30386 3.43557 3.90871 4.04637 4.25755 4.26649 4.28284 4.36643 4.52659 4.64440 4.75655 4.84325 4.87271 4.89164 4.94935 4.97608 5.08887 5.13297 5.24605 5.27153 5.29856 5.32923 5.37005 5.38556 5.53742 5.57789 5.59709 5.68871 5.80443 5.92779 5.95964 6.01150 6.09666 6.26985 6.33482 6.43033 6.77933 7.20550 7.27589 7.55038 7.65348 8.01531 8.06191 8.61357 9.17809 9.54368 10.05848 10.76108 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.001638 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.050871 B =17089.653937 C =18506.540293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.059 3.941 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.723 5.723 20 C 0.522 3.478 21 O -0.532 6.532 22 C -0.131 4.131 23 C 0.265 3.735 24 O -0.379 6.379 25 C 0.059 3.941 26 C -0.194 4.194 27 C 0.059 3.941 28 O -0.395 6.395 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.403 0.597 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.582 7.378 -24.188 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.071 4.071 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.376 5.376 20 C 0.308 3.692 21 O -0.408 6.408 22 C -0.171 4.171 23 C 0.169 3.831 24 O -0.299 6.299 25 C -0.018 4.018 26 C -0.232 4.232 27 C -0.018 4.018 28 O -0.316 6.316 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.238 0.762 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.199 7.023 -23.880 29.698 hybrid contribution 1.209 0.638 0.358 1.413 sum -14.990 7.661 -23.523 28.926 Atomic orbital electron populations 1.22158 0.95071 1.02273 1.02541 1.20963 0.94042 0.97463 0.83539 0.89440 1.21881 0.95615 1.02043 0.96848 1.21962 0.94528 0.96129 0.94439 1.60101 1.04929 1.59878 1.05277 1.21665 0.88932 0.98736 0.98868 1.19813 0.83404 0.86146 0.88051 1.90517 1.53402 1.50509 1.52367 1.41861 1.05444 1.48890 1.23822 1.19661 0.91990 1.30391 1.00977 0.87961 1.25263 0.95612 0.97791 0.99255 1.69603 1.02560 1.44238 1.37934 0.85909 0.77230 0.79805 0.81218 1.19877 1.20985 1.19918 1.46085 1.67681 1.14291 1.09547 1.20141 0.77662 0.87278 0.84158 1.90727 1.49403 1.15884 1.84755 1.21479 1.05206 0.99318 0.91051 1.22850 0.81948 0.93013 0.85281 1.88159 1.28202 1.63605 1.49914 1.22605 1.02365 0.91598 0.85240 1.22816 0.98209 1.02639 0.99520 1.22645 0.95747 0.95132 0.88229 1.88063 1.80771 1.41610 1.21161 0.92321 0.91560 0.92090 0.90207 0.90146 0.91174 0.95572 0.83200 0.89686 0.93943 0.77460 0.91817 0.76247 0.86411 0.87134 0.91731 0.92743 0.88359 0.89688 0.89984 0.92682 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.32 2.57 -67.93 -0.17 1.14 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C -0.13 -1.18 5.01 -26.73 -0.13 -1.32 16 5 C 0.06 0.69 5.57 -3.83 -0.02 0.67 16 6 N -0.67 -10.52 6.13 -115.06 -0.71 -11.22 16 7 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 8 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 9 O -0.58 -15.86 15.78 5.55 0.09 -15.78 16 10 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 11 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 12 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 15 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.72 -6.08 4.53 -53.81 -0.24 -6.32 16 20 C 0.52 5.33 7.67 -10.99 -0.08 5.24 16 21 O -0.53 -7.37 15.08 -8.85 -0.13 -7.50 16 22 C -0.13 -1.06 5.78 -27.88 -0.16 -1.22 16 23 C 0.26 2.58 2.80 37.16 0.10 2.68 16 24 O -0.38 -4.12 9.77 -64.75 -0.63 -4.75 16 25 C 0.06 0.45 6.96 37.30 0.26 0.71 16 26 C -0.19 -1.13 6.35 -26.46 -0.17 -1.30 16 27 C 0.06 0.39 6.96 37.29 0.26 0.65 16 28 O -0.40 -3.71 10.54 -59.03 -0.62 -4.34 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 5.67 8.43 -39.29 -0.33 5.34 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.40 2.59 8.60 -40.82 -0.35 2.24 16 42 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 413.33 15.07 6.23 6.23 Total: -1.00 -34.77 413.33 -8.99 -43.77 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -8.49 Total: 12.76 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.13 Total: 9.36 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.28 Total: -55.79 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.30 Total: -32.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.77 -8.99 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732687929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.217 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds