Wall clock time and date at job start Wed Apr 1 2020 02:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 N 1.46893 * 109.47254 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99942 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21288 * 120.00323 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00319 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99824 * 359.97438 * 11 10 8 13 13 C 1.38943 * 120.00335 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00254 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00037 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46797 * 59.99810 * 15 13 11 17 17 H 1.48493 * 109.47020 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47075 * 299.99971 * 15 13 11 19 19 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 20 20 C 1.34773 * 119.99910 * 84.99768 * 19 2 1 21 21 O 1.21279 * 120.00033 * 0.02562 * 20 19 2 22 22 C 1.50699 * 119.99928 * 180.02562 * 20 19 2 23 23 C 1.53002 * 109.47295 * 180.02562 * 22 20 19 24 24 O 1.42963 * 109.47308 * 294.99835 * 23 22 20 25 25 C 1.43087 * 113.77524 * 181.20235 * 24 23 22 26 26 C 1.53269 * 108.94075 * 57.96948 * 25 24 23 27 27 C 1.53261 * 108.84470 * 305.48126 * 26 25 24 28 28 O 1.42971 * 109.47359 * 174.99991 * 23 22 20 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 33 33 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 34 34 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 35 35 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 36 36 H 1.00905 * 111.00048 * 303.94961 * 6 5 4 37 37 H 1.08997 * 109.46771 * 299.99632 * 7 6 5 38 38 H 1.09000 * 109.46946 * 59.99495 * 7 6 5 39 39 H 0.97001 * 120.00706 * 0.02562 * 10 8 7 40 40 H 0.97005 * 120.00353 * 180.02562 * 14 13 11 41 41 H 0.97003 * 119.99995 * 265.00643 * 19 2 1 42 42 H 1.08999 * 109.47104 * 300.00397 * 22 20 19 43 43 H 1.09000 * 109.47712 * 60.00108 * 22 20 19 44 44 H 1.08995 * 109.46997 * 54.99926 * 23 22 20 45 45 H 1.09000 * 109.56123 * 298.13715 * 25 24 23 46 46 H 1.08997 * 109.65307 * 177.86462 * 25 24 23 47 47 H 1.08995 * 109.57373 * 185.67205 * 26 25 24 48 48 H 1.09004 * 109.67650 * 65.35137 * 26 25 24 49 49 H 1.09001 * 109.55429 * 294.68279 * 27 26 25 50 50 H 1.08996 * 109.64382 * 174.41576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 7 4.0546 -1.3063 2.5128 7 6 5.5181 -1.2228 2.6083 8 6 5.9825 -1.9427 3.8481 9 8 5.1739 -2.4727 4.5804 10 7 7.2964 -1.9975 4.1432 11 6 7.7189 -2.6519 5.2714 12 1 6.9988 -3.1232 5.9239 13 6 9.0734 -2.7079 5.5759 14 7 9.9496 -2.1341 4.7823 15 14 9.6490 -3.5991 7.1135 16 1 9.2378 -5.0243 7.0428 17 1 11.1285 -3.5153 7.2096 18 1 9.0382 -2.9665 8.3101 19 7 2.0184 -0.6907 -1.1962 20 6 2.1470 -0.0184 -2.3571 21 8 1.8590 1.1585 -2.4115 22 6 2.6488 -0.7290 -3.5877 23 6 2.7009 0.2543 -4.7588 24 8 1.3753 0.6807 -5.0825 25 6 1.3145 1.5861 -6.1888 26 6 1.9408 0.9147 -7.4161 27 6 3.3545 0.4450 -7.0560 28 8 3.2855 -0.3879 -5.8946 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6055 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0729 0.4260 35 1 3.8532 0.4370 1.3572 36 1 3.6168 -0.9414 3.3455 37 1 5.9666 -1.6859 1.7294 38 1 5.8196 -0.1766 2.6615 39 1 7.9432 -1.5733 3.5578 40 1 10.8953 -2.1736 4.9947 41 1 2.2490 -1.6319 -1.1526 42 1 3.6479 -1.1215 -3.3986 43 1 1.9759 -1.5508 -3.8326 44 1 3.3030 1.1192 -4.4805 45 1 1.8672 2.4942 -5.9480 46 1 0.2752 1.8369 -6.4006 47 1 1.9915 1.6296 -8.2373 48 1 1.3362 0.0581 -7.7143 49 1 3.9844 1.3100 -6.8480 50 1 3.7751 -0.1214 -7.8868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732687929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:35 Heat of formation + Delta-G solvation = -204.932774 kcal Electronic energy + Delta-G solvation = -29532.825177 eV Core-core repulsion = 25172.405882 eV Total energy + Delta-G solvation = -4360.419295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.32070 -40.44462 -40.12741 -37.94169 -36.69224 -36.26908 -35.67627 -34.24410 -33.28521 -32.81685 -30.97369 -30.12079 -27.77919 -26.94208 -25.84273 -25.03067 -23.26806 -22.23475 -21.92946 -21.39771 -21.04025 -19.90196 -18.78329 -17.91230 -17.81154 -17.64555 -17.28354 -16.91910 -16.79749 -16.44258 -15.99252 -15.91839 -15.84006 -15.72875 -15.37082 -15.07874 -14.88018 -14.55847 -14.31215 -14.30507 -13.98231 -13.75235 -13.66253 -13.48013 -13.27512 -12.97538 -12.91032 -12.77827 -12.43471 -12.43191 -12.20292 -12.12876 -12.10600 -12.09600 -12.07409 -11.74824 -11.49613 -11.02475 -10.87754 -10.68777 -10.35080 -10.05676 -10.01559 -9.33579 -8.46162 -5.95245 1.40684 1.42607 1.53627 1.66530 1.97729 2.05452 2.29699 2.64213 2.80366 2.89865 3.21024 3.49837 3.69016 3.77613 3.77809 3.84793 3.96570 4.02894 4.12831 4.15863 4.25260 4.33848 4.39729 4.42949 4.44483 4.51833 4.52697 4.54889 4.63850 4.70636 4.71776 4.82002 4.84056 4.86901 4.92932 5.09701 5.09889 5.23221 5.33798 5.41115 5.58980 5.82937 5.89079 6.10327 6.13990 6.40745 6.58302 6.60206 7.12638 7.28377 7.56351 8.11423 8.70933 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.001638 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.050871 B =17089.653937 C =18506.540293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.071 0.929 4 C -0.114 4.114 5 C 0.062 3.938 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.573 5.573 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.713 5.713 20 C 0.521 3.479 21 O -0.573 6.573 22 C -0.126 4.126 23 C 0.262 3.738 24 O -0.404 6.404 25 C 0.047 3.953 26 C -0.186 4.186 27 C 0.048 3.952 28 O -0.408 6.408 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.344 0.656 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.415 0.585 42 H 0.139 0.861 43 H 0.123 0.877 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 6.979 -25.116 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.067 4.067 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.466 4.466 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.366 5.366 20 C 0.308 3.692 21 O -0.452 6.452 22 C -0.165 4.165 23 C 0.167 3.833 24 O -0.325 6.325 25 C -0.029 4.029 26 C -0.223 4.223 27 C -0.028 4.028 28 O -0.329 6.329 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.163 0.837 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.157 0.843 43 H 0.141 0.859 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.026 6.614 -24.839 30.291 hybrid contribution 1.112 0.802 0.589 1.492 sum -14.914 7.416 -24.250 29.419 Atomic orbital electron populations 1.22099 0.94468 1.02784 1.02129 1.20845 0.94408 0.96619 0.83610 0.91099 1.21769 0.93995 1.02358 0.97066 1.22036 0.95867 0.95890 0.92919 1.60122 1.03655 1.61040 1.06409 1.21531 0.90331 0.98936 0.96018 1.20878 0.82410 0.85080 0.89155 1.90485 1.54218 1.52021 1.54183 1.41938 1.06359 1.49212 1.23537 1.19652 0.92403 1.32221 1.02288 0.90228 1.26050 0.95162 0.98049 1.02004 1.69665 1.02942 1.44464 1.39055 0.84977 0.77275 0.78493 0.77519 1.19675 1.19526 1.19681 1.46016 1.66890 1.14788 1.08916 1.20495 0.76962 0.86815 0.84943 1.90709 1.51333 1.17747 1.85423 1.21504 1.06563 0.98962 0.89508 1.22847 0.81517 0.93019 0.85928 1.88122 1.28882 1.64280 1.51169 1.22831 1.03258 0.91412 0.85368 1.22764 0.97406 1.02872 0.99285 1.22921 0.96471 0.95531 0.87877 1.88034 1.80758 1.42357 1.21765 0.91301 0.90650 0.93838 0.89748 0.89682 0.90245 0.95344 0.83740 0.87763 0.92011 0.76997 0.91287 0.74810 0.84314 0.85896 0.93006 0.92802 0.87459 0.87216 0.90402 0.92084 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.48 71.98 0.68 -1.83 16 2 C 0.15 2.56 2.57 44.99 0.12 2.68 16 3 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 4 C -0.11 -1.93 5.01 30.59 0.15 -1.77 16 5 C 0.06 1.31 5.57 86.30 0.48 1.79 16 6 N -0.68 -20.32 6.13 -517.93 -3.17 -23.50 16 7 C 0.06 2.17 6.17 85.56 0.53 2.69 16 8 C 0.44 20.69 7.82 87.66 0.69 21.38 16 9 O -0.62 -34.27 15.78 -3.05 -0.05 -34.32 16 10 N -0.57 -29.40 5.29 -306.99 -1.62 -31.03 16 11 C -0.34 -19.10 9.68 84.04 0.81 -18.28 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 14 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 15 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 N -0.71 -10.98 4.53 -442.54 -2.00 -12.99 16 20 C 0.52 10.30 7.67 87.66 0.67 10.97 16 21 O -0.57 -16.09 15.08 10.75 0.16 -15.93 16 22 C -0.13 -1.91 5.78 29.85 0.17 -1.74 16 23 C 0.26 5.04 2.80 71.98 0.20 5.24 16 24 O -0.40 -8.80 9.77 -120.75 -1.18 -9.98 16 25 C 0.05 0.71 6.96 72.07 0.50 1.21 16 26 C -0.19 -1.93 6.35 30.77 0.20 -1.73 16 27 C 0.05 0.57 6.96 72.07 0.50 1.07 16 28 O -0.41 -7.31 10.54 -126.22 -1.33 -8.64 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.56 7.75 -2.39 -0.02 1.54 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.34 10.85 8.43 -89.69 -0.76 10.09 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 40 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 41 H 0.41 4.42 8.60 -92.71 -0.80 3.63 16 42 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.08 0.88 8.14 -2.38 -0.02 0.87 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.73 413.33 -2.04 -77.77 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -1.32 Total: 41.68 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 6.17 Total: 21.46 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -6.52 Total: -116.85 kcal Atomic # 8 Polarization: -66.47 SS G_CDS: -2.40 Total: -68.86 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -75.73 -2.04 -77.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732687929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.165 kcal (2) G-P(sol) polarization free energy of solvation -75.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds