Wall clock time and date at job start Wed Apr 1 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47340 * 2 1 4 4 O 1.42899 * 109.47304 * 179.97438 * 3 2 1 5 5 C 1.42896 * 113.99957 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46866 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00543 * 359.97438 * 6 5 4 8 8 N 1.34784 * 120.00193 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00198 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47059 * 184.98597 * 9 8 6 11 11 H 1.09000 * 109.54320 * 185.82694 * 10 9 8 12 12 C 1.53095 * 109.50964 * 65.71301 * 10 9 8 13 13 O 1.43010 * 109.26203 * 183.21453 * 12 10 9 14 14 C 1.43020 * 113.73498 * 58.67292 * 13 12 10 15 15 C 1.53097 * 109.26054 * 301.33062 * 14 13 12 16 16 N 1.47009 * 109.25785 * 56.84535 * 15 14 13 17 17 C 1.46903 * 111.00095 * 177.60920 * 16 15 14 18 18 C 1.50703 * 109.47022 * 287.57155 * 17 16 15 19 19 O 1.21295 * 119.99759 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99931 * 179.72595 * 18 17 16 21 21 C 1.37093 * 120.00006 * 180.27520 * 20 18 17 22 22 H 1.08006 * 120.00278 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00022 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99947 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47068 * 90.00134 * 25 23 21 27 27 H 1.48496 * 109.47223 * 210.00612 * 25 23 21 28 28 H 1.48505 * 109.47059 * 330.00118 * 25 23 21 29 29 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46918 * 299.99576 * 1 2 3 31 31 H 1.08993 * 109.47519 * 59.99591 * 1 2 3 32 32 H 1.09001 * 109.46846 * 239.99716 * 2 1 3 33 33 H 1.09005 * 109.47116 * 120.00510 * 2 1 3 34 34 H 1.09007 * 109.46769 * 60.00333 * 3 2 1 35 35 H 1.08995 * 109.47598 * 300.00377 * 3 2 1 36 36 H 1.09002 * 109.47230 * 60.01083 * 5 4 3 37 37 H 1.09000 * 109.47401 * 300.00112 * 5 4 3 38 38 H 0.97002 * 119.99440 * 359.97438 * 8 6 5 39 39 H 1.08999 * 109.47110 * 64.98726 * 9 8 6 40 40 H 1.08998 * 109.47060 * 304.98087 * 9 8 6 41 41 H 1.08994 * 109.51027 * 303.15527 * 12 10 9 42 42 H 1.09009 * 109.50435 * 63.24209 * 12 10 9 43 43 H 1.09000 * 109.50678 * 61.26986 * 14 13 12 44 44 H 1.09003 * 109.50851 * 181.34895 * 14 13 12 45 45 H 1.09008 * 109.50504 * 296.91489 * 15 14 13 46 46 H 1.09001 * 109.50953 * 176.78511 * 15 14 13 47 47 H 1.09000 * 109.47020 * 167.57501 * 17 16 15 48 48 H 1.08994 * 109.47002 * 47.57216 * 17 16 15 49 49 H 0.97003 * 119.99510 * 0.27149 * 20 18 17 50 50 H 0.97004 * 120.00266 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0502 2.7478 0.0001 6 6 5.5525 2.6288 0.0001 7 8 6.0742 1.5339 0.0011 8 7 6.3166 3.7391 0.0002 9 6 7.7770 3.6234 0.0008 10 6 8.3988 5.0156 0.1262 11 1 9.4815 4.9421 0.0230 12 6 8.0548 5.6079 1.4953 13 8 8.5745 6.9377 1.5782 14 6 8.0736 7.8156 0.5664 15 6 8.4178 7.2458 -0.8123 16 7 7.8636 5.8891 -0.9283 17 6 8.1233 5.3265 -2.2602 18 6 7.2443 6.0112 -3.2749 19 8 6.4767 6.8820 -2.9231 20 7 7.3148 5.6596 -4.5741 21 6 6.5193 6.2864 -5.4981 22 1 5.8363 7.0624 -5.1850 23 6 6.5923 5.9243 -6.8375 24 7 7.4236 4.9806 -7.2186 25 14 5.5089 6.7789 -8.0966 26 1 6.2188 7.9665 -8.6357 27 1 5.2028 5.8395 -9.2052 28 1 4.2436 7.2100 -7.4496 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 3.7284 3.2892 0.8897 37 1 3.7290 3.2883 -0.8903 38 1 5.8994 4.6149 -0.0002 39 1 8.1053 3.1613 -0.9302 40 1 8.0923 3.0076 0.8431 41 1 6.9723 5.6318 1.6200 42 1 8.4980 4.9938 2.2793 43 1 6.9916 7.9038 0.6641 44 1 8.5304 8.7989 0.6789 45 1 9.5008 7.2078 -0.9304 46 1 7.9887 7.8818 -1.5865 47 1 7.9051 4.2585 -2.2524 48 1 9.1698 5.4816 -2.5224 49 1 7.9285 4.9630 -4.8554 50 1 7.4749 4.7280 -8.1538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733698540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:22 Heat of formation + Delta-G solvation = -155.346272 kcal Electronic energy + Delta-G solvation = -31146.338116 eV Core-core repulsion = 26788.069053 eV Total energy + Delta-G solvation = -4358.269063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31960 -39.36204 -38.04023 -37.79021 -35.94366 -34.44554 -33.85109 -33.76850 -31.55763 -31.29300 -29.20220 -28.61585 -26.55884 -25.65029 -25.33762 -23.83898 -22.56481 -21.78577 -20.77441 -19.90079 -19.22678 -17.93098 -17.34107 -16.99712 -16.79785 -16.54265 -16.19011 -15.89280 -15.64982 -15.23385 -14.98530 -14.83103 -14.66210 -14.35080 -14.15388 -14.05388 -13.75555 -13.59879 -13.36284 -13.29330 -12.89455 -12.33962 -12.30328 -12.20789 -12.18071 -12.01229 -11.70073 -11.56883 -11.39559 -11.18289 -11.12434 -11.08706 -10.89594 -10.53582 -10.43465 -10.26580 -9.82096 -9.77354 -9.71951 -9.53299 -8.97545 -8.59560 -8.09061 -7.99846 -6.45825 -3.87150 2.66279 2.79086 3.13965 3.23272 3.28101 3.63509 3.79598 3.84397 3.93363 4.16799 4.60205 4.62901 4.73309 4.76029 4.88313 4.93384 5.00710 5.02331 5.10854 5.15976 5.17198 5.18940 5.24965 5.28059 5.29250 5.36850 5.47154 5.49820 5.56820 5.63244 5.72638 5.73822 5.74801 5.87828 5.90724 5.98944 6.00846 6.09499 6.20031 6.42827 6.92651 7.00700 7.01098 7.15060 7.50485 7.58074 8.00729 8.28200 8.56048 9.13095 9.49285 10.00066 10.71722 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006005 B = 0.003718 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4661.851686 B = 7528.628815 C =11179.815976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.044 3.956 6 C 0.515 3.485 7 O -0.528 6.528 8 N -0.715 5.715 9 C 0.130 3.870 10 C 0.031 3.969 11 H 0.066 0.934 12 C 0.073 3.927 13 O -0.387 6.387 14 C 0.065 3.935 15 C 0.022 3.978 16 N -0.508 5.508 17 C 0.038 3.962 18 C 0.445 3.555 19 O -0.580 6.580 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 -3.112 16.609 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.036 4.036 6 C 0.300 3.700 7 O -0.403 6.403 8 N -0.370 5.370 9 C 0.005 3.995 10 C -0.078 4.078 11 H 0.083 0.917 12 C -0.004 4.004 13 O -0.306 6.306 14 C -0.012 4.012 15 C -0.106 4.106 16 N -0.233 5.233 17 C -0.093 4.093 18 C 0.230 3.770 19 O -0.464 6.464 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.069 0.931 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.431 -3.483 16.850 17.768 hybrid contribution 0.301 0.493 -1.436 1.547 sum -4.130 -2.990 15.415 16.236 Atomic orbital electron populations 1.21697 0.94737 1.02217 1.02031 1.21443 0.95548 0.95498 1.03603 1.22633 0.80590 0.98188 1.00354 1.87980 1.19492 1.25362 1.95475 1.22175 0.91682 0.86820 1.02874 1.20195 0.88673 0.84516 0.76603 1.90716 1.74662 1.26586 1.48375 1.45740 1.06510 1.09335 1.75416 1.21338 0.80019 0.95316 1.02783 1.22661 0.98381 0.92868 0.93899 0.91656 1.22632 0.99155 0.83636 0.95004 1.87962 1.69457 1.20664 1.52504 1.22702 0.99514 0.92903 0.86064 1.22860 0.97398 0.90930 0.99403 1.61778 1.58263 1.01720 1.01572 1.22000 0.98356 1.00141 0.88767 1.19634 0.87285 0.87017 0.83063 1.90490 1.41972 1.34401 1.79546 1.41870 1.37297 1.35373 1.05349 1.19666 1.18274 1.18084 0.86928 0.87921 1.25268 0.97711 0.96783 0.98118 1.69609 1.36749 1.29716 1.17998 0.85867 0.80073 0.78702 0.79701 1.20418 1.20896 1.19421 0.92033 0.92592 0.92416 0.90904 0.91103 0.93273 0.92953 0.90417 0.89787 0.75128 0.90913 0.90427 0.92283 0.88502 0.91974 0.88596 0.94617 0.87468 0.88940 0.93104 0.77534 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.14 6.30 -26.73 -0.17 -1.31 16 3 C 0.06 0.60 5.94 37.15 0.22 0.82 16 4 O -0.36 -5.06 9.88 -55.14 -0.54 -5.60 16 5 C 0.04 0.53 6.42 36.01 0.23 0.77 16 6 C 0.52 7.46 7.91 -10.98 -0.09 7.37 16 7 O -0.53 -9.74 16.50 -14.35 -0.24 -9.98 16 8 N -0.71 -8.94 5.05 -60.30 -0.30 -9.25 16 9 C 0.13 1.54 4.72 -4.04 -0.02 1.52 16 10 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 11 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 12 C 0.07 0.77 6.21 37.21 0.23 1.00 16 13 O -0.39 -4.80 10.83 -35.23 -0.38 -5.19 16 14 C 0.06 0.79 7.01 37.21 0.26 1.05 16 15 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 16 N -0.51 -7.33 3.49 -227.77 -0.79 -8.12 16 17 C 0.04 0.64 5.30 -4.97 -0.03 0.61 16 18 C 0.44 9.84 7.51 -10.98 -0.08 9.76 16 19 O -0.58 -14.36 14.44 5.54 0.08 -14.28 16 20 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 21 C -0.30 -8.12 9.68 -14.94 -0.14 -8.26 16 22 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 25 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.41 4.95 7.43 -40.82 -0.30 4.65 16 39 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 42 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.11 1.83 6.44 -51.93 -0.33 1.50 16 47 H 0.09 1.48 5.65 -51.93 -0.29 1.19 16 48 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 49 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -33.08 406.05 -8.14 -41.22 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -8.23 Total: 13.12 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 0.52 Total: 13.67 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.43 Total: -54.74 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.08 Total: -35.05 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.08 -8.14 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733698540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.127 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds