Wall clock time and date at job start Wed Apr 1 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47321 * 2 1 4 4 C 1.42897 * 113.99994 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47598 * 329.99626 * 4 3 2 6 6 C 1.53005 * 109.47295 * 90.00216 * 4 3 2 7 7 C 1.50707 * 109.46825 * 209.99661 * 4 3 2 8 8 O 1.21281 * 119.99916 * 343.60972 * 7 4 3 9 9 N 1.34780 * 119.99819 * 163.60766 * 7 4 3 10 10 C 1.47152 * 120.97922 * 4.46489 * 9 7 4 11 11 C 1.53294 * 108.38493 * 129.44320 * 10 9 7 12 12 O 1.42972 * 109.22249 * 52.29579 * 11 10 9 13 13 C 1.42964 * 114.16828 * 297.42212 * 12 11 10 14 14 H 1.09007 * 109.50692 * 302.65858 * 13 12 11 15 15 C 1.52995 * 109.51136 * 182.55843 * 13 12 11 16 16 N 1.46898 * 109.47414 * 64.99943 * 15 13 12 17 17 C 1.46898 * 110.99688 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46845 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99819 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99786 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99500 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00179 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99501 * 180.02562 * 21 20 18 24 24 N 1.31402 * 119.99990 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99774 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47101 * 89.99914 * 25 23 21 27 27 H 1.48496 * 109.46851 * 209.99980 * 25 23 21 28 28 H 1.48507 * 109.47038 * 329.99811 * 25 23 21 29 29 C 1.47149 * 120.97802 * 184.17880 * 9 7 4 30 30 H 1.09005 * 109.47073 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47302 * 60.00021 * 1 2 3 32 32 H 1.09002 * 109.47517 * 299.99753 * 1 2 3 33 33 H 1.08997 * 109.47418 * 120.00177 * 2 1 3 34 34 H 1.09005 * 109.47155 * 239.99871 * 2 1 3 35 35 H 1.08999 * 109.47092 * 60.97618 * 6 4 3 36 36 H 1.09003 * 109.46910 * 180.98248 * 6 4 3 37 37 H 1.08999 * 109.46910 * 300.98303 * 6 4 3 38 38 H 1.09001 * 109.67658 * 249.16171 * 10 9 7 39 39 H 1.08994 * 109.68599 * 9.71276 * 10 9 7 40 40 H 1.09000 * 109.51686 * 172.22323 * 11 10 9 41 41 H 1.09007 * 109.51090 * 292.32802 * 11 10 9 42 42 H 1.09001 * 109.46522 * 185.00204 * 15 13 12 43 43 H 1.09001 * 109.46723 * 304.99269 * 15 13 12 44 44 H 1.00896 * 111.00051 * 56.04532 * 16 15 13 45 45 H 1.09002 * 109.47334 * 299.99629 * 17 16 15 46 46 H 1.08993 * 109.47783 * 59.99909 * 17 16 15 47 47 H 0.96998 * 120.00087 * 0.02562 * 20 18 17 48 48 H 0.97006 * 120.00103 * 179.97438 * 24 23 21 49 49 H 1.08995 * 109.68383 * 350.28504 * 29 9 7 50 50 H 1.09004 * 109.68062 * 110.83717 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 3.8347 2.7263 0.7098 8 8 3.0155 3.5985 0.9073 9 7 5.1063 2.8894 1.1256 10 6 6.1398 1.8898 0.8125 11 6 7.3476 2.6157 0.2091 12 8 7.7381 3.6821 1.0776 13 6 6.7412 4.6923 1.2489 14 1 6.4702 5.1048 0.2770 15 6 7.2909 5.8066 2.1417 16 7 8.4074 6.4746 1.4596 17 6 8.9619 7.5525 2.2895 18 6 10.1020 8.2134 1.5583 19 8 10.4213 7.8245 0.4547 20 7 10.7666 9.2367 2.1307 21 6 11.8041 9.8376 1.4657 22 1 12.0889 9.4907 0.4834 23 6 12.4897 10.8922 2.0560 24 7 12.1433 11.3139 3.2514 25 14 13.9028 11.7115 1.1497 26 1 13.3806 12.8352 0.3312 27 1 14.8867 12.2309 2.1332 28 1 14.5643 10.7196 0.2643 29 6 5.5035 4.0755 1.9008 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.5197 2.3689 -1.9517 36 1 5.0266 1.5690 -1.4437 37 1 3.6315 0.5926 -1.9622 38 1 6.4397 1.3739 1.7247 39 1 5.7481 1.1693 0.0946 40 1 8.1752 1.9151 0.0978 41 1 7.0790 3.0200 -0.7670 42 1 6.5028 6.5317 2.3445 43 1 7.6421 5.3795 3.0810 44 1 8.1229 6.8231 0.5565 45 1 8.1856 8.2899 2.4937 46 1 9.3249 7.1372 3.2296 47 1 10.5114 9.5475 3.0134 48 1 12.6222 12.0499 3.6637 49 1 4.6907 4.8017 1.9030 50 1 5.7383 3.7834 2.9243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733731617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:37 Heat of formation + Delta-G solvation = -177.721420 kcal Electronic energy + Delta-G solvation = -30046.959087 eV Core-core repulsion = 25687.719766 eV Total energy + Delta-G solvation = -4359.239322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69426 -40.20767 -39.81149 -38.63971 -36.91309 -35.97342 -35.72538 -33.74259 -33.27152 -32.65395 -31.08132 -29.73513 -28.57765 -26.85415 -25.41822 -24.86276 -23.87891 -23.47857 -22.36390 -21.07182 -20.38676 -19.90341 -18.65180 -18.15156 -17.95470 -17.59831 -16.99860 -16.83036 -16.66974 -16.39000 -16.33561 -16.17723 -15.91998 -15.66970 -15.37754 -14.93640 -14.87239 -14.64864 -14.43993 -14.22466 -13.94668 -13.54558 -13.51529 -13.32312 -13.23353 -13.15441 -13.08446 -12.94048 -12.76859 -12.59713 -12.41284 -12.32674 -12.22314 -12.11487 -12.08410 -11.65377 -11.50344 -11.17895 -10.93641 -10.53902 -10.34941 -10.01083 -9.67979 -9.30788 -8.46107 -5.94952 1.38076 1.38581 1.42189 1.51585 1.55318 2.05876 2.29714 2.70520 2.75453 2.87862 3.21160 3.31663 3.47287 3.75543 3.80855 3.87495 3.91450 3.96661 4.00884 4.16799 4.19025 4.28118 4.29947 4.32794 4.41686 4.47199 4.50291 4.51043 4.56865 4.59163 4.66184 4.71698 4.73885 4.84135 4.86953 4.95315 5.00559 5.15660 5.21089 5.26217 5.41336 5.86011 6.02062 6.08001 6.21334 6.25043 6.39223 6.60867 6.96662 7.13105 7.56700 8.12286 8.71293 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.001597 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.178976 B =17532.779404 C =17803.224325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.075 3.925 5 H 0.118 0.882 6 C -0.171 4.171 7 C 0.511 3.489 8 O -0.571 6.571 9 N -0.611 5.611 10 C 0.066 3.934 11 C 0.038 3.962 12 O -0.377 6.377 13 C 0.092 3.908 14 H 0.050 0.950 15 C 0.070 3.930 16 N -0.676 5.676 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.088 3.912 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.341 0.659 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.088 0.912 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.304 -26.775 -2.891 33.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.314 6.314 4 C 0.014 3.986 5 H 0.135 0.865 6 C -0.228 4.228 7 C 0.300 3.700 8 O -0.450 6.450 9 N -0.346 5.346 10 C -0.056 4.056 11 C -0.039 4.039 12 O -0.295 6.295 13 C 0.033 3.967 14 H 0.068 0.932 15 C -0.060 4.060 16 N -0.308 5.308 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.035 4.035 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.159 0.841 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.948 -26.729 -3.091 32.910 hybrid contribution -0.214 1.502 -0.083 1.519 sum -19.163 -25.228 -3.174 31.839 Atomic orbital electron populations 1.21778 0.93355 1.03487 1.02338 1.22853 0.96182 0.82073 1.01765 1.88043 1.19264 1.28858 1.95186 1.22001 0.83575 0.95302 0.97734 0.86462 1.22342 1.02690 1.04301 0.93500 1.21149 0.81479 0.89250 0.78135 1.90695 1.51760 1.45095 1.57419 1.48177 1.08583 1.23307 1.54520 1.22901 0.87995 0.91084 1.03605 1.23212 0.98182 0.89905 0.92621 1.88136 1.40012 1.33737 1.67645 1.22230 0.87561 0.88727 0.98192 0.93193 1.21982 0.92073 0.94279 0.97622 1.59949 1.34622 1.30535 1.05714 1.21538 0.94857 0.93322 0.96926 1.20882 0.86767 0.82322 0.87537 1.90489 1.70776 1.66551 1.23185 1.41924 1.30139 1.30028 1.18927 1.19681 1.10209 1.14380 1.02275 0.90371 1.26036 1.01222 0.97135 0.96776 1.69670 1.42743 1.28330 1.15332 0.84925 0.77381 0.78155 0.77846 1.19633 1.19461 1.19804 1.22109 0.97015 0.88483 0.95895 0.88540 0.92532 0.93142 0.91885 0.90949 0.93149 0.88936 0.88570 0.88433 0.85707 0.85292 0.92956 0.91904 0.89049 0.84063 0.91392 0.87629 0.76931 0.91288 0.89343 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.49 6.47 71.98 0.47 0.95 16 3 O -0.39 -7.49 9.57 -130.47 -1.25 -8.74 16 4 C 0.07 1.05 2.28 29.85 0.07 1.12 16 5 H 0.12 0.80 6.98 -2.39 -0.02 0.79 16 6 C -0.17 -1.70 9.18 71.98 0.66 -1.04 16 7 C 0.51 11.09 7.01 87.66 0.61 11.71 16 8 O -0.57 -18.33 16.05 15.47 0.25 -18.09 16 9 N -0.61 -10.63 3.03 -818.16 -2.48 -13.11 16 10 C 0.07 0.65 5.97 86.35 0.52 1.17 16 11 C 0.04 0.55 6.99 72.08 0.50 1.05 16 12 O -0.38 -8.83 10.33 -148.98 -1.54 -10.37 16 13 C 0.09 2.05 2.94 30.55 0.09 2.14 16 14 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 15 C 0.07 1.65 5.36 86.30 0.46 2.11 16 16 N -0.68 -22.15 6.07 -517.95 -3.15 -25.29 16 17 C 0.07 2.30 6.17 85.56 0.53 2.83 16 18 C 0.44 21.31 7.82 87.66 0.69 22.00 16 19 O -0.62 -35.48 15.78 -3.06 -0.05 -35.53 16 20 N -0.57 -29.92 5.29 -306.98 -1.62 -31.54 16 21 C -0.34 -19.40 9.68 84.04 0.81 -18.58 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 25 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 C 0.09 1.73 5.92 86.22 0.51 2.24 16 30 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.47 8.09 -2.39 -0.02 0.45 16 34 H 0.07 0.43 7.85 -2.38 -0.02 0.41 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.57 6.08 -2.39 -0.01 0.56 16 37 H 0.10 0.52 7.85 -2.39 -0.02 0.51 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 0.47 4.39 -2.39 -0.01 0.46 16 40 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.34 11.86 8.43 -89.70 -0.76 11.10 16 45 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 48 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 49 H 0.09 2.00 7.07 -2.39 -0.02 1.98 16 50 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -81.97 407.53 -0.93 -82.90 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.53 Total: 37.45 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 7.12 Total: 26.71 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -6.96 Total: -119.72 kcal Atomic # 8 Polarization: -70.14 SS G_CDS: -2.59 Total: -72.73 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -81.97 -0.93 -82.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733731617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.823 kcal (2) G-P(sol) polarization free energy of solvation -81.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds