Wall clock time and date at job start Wed Apr 1 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47074 * 2 1 4 4 C 1.42897 * 113.99845 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47438 * 329.99568 * 4 3 2 6 6 C 1.53002 * 109.47252 * 90.00175 * 4 3 2 7 7 C 1.50703 * 109.46951 * 209.99573 * 4 3 2 8 8 O 1.21283 * 119.99919 * 351.71029 * 7 4 3 9 9 N 1.34777 * 120.00125 * 171.42950 * 7 4 3 10 10 C 1.47156 * 120.97943 * 355.03751 * 9 7 4 11 11 C 1.53297 * 108.38337 * 230.50777 * 10 9 7 12 12 O 1.42959 * 109.22391 * 307.69864 * 11 10 9 13 13 C 1.42965 * 114.16518 * 62.58407 * 12 11 10 14 14 H 1.08999 * 109.51832 * 57.33790 * 13 12 11 15 15 C 1.53005 * 109.51335 * 177.44335 * 13 12 11 16 16 N 1.46896 * 109.46628 * 299.99825 * 15 13 12 17 17 C 1.46904 * 110.99943 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47337 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00100 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99964 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00088 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99734 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00264 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99845 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00174 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47092 * 59.99893 * 25 23 21 27 27 H 1.48498 * 109.47140 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46709 * 300.00057 * 25 23 21 29 29 C 1.47147 * 120.98226 * 174.75463 * 9 7 4 30 30 H 1.09006 * 109.47188 * 300.00511 * 1 2 3 31 31 H 1.09001 * 109.47073 * 60.00280 * 1 2 3 32 32 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47146 * 239.99714 * 2 1 3 34 34 H 1.09001 * 109.47073 * 119.99720 * 2 1 3 35 35 H 1.08991 * 109.47144 * 60.21058 * 6 4 3 36 36 H 1.09001 * 109.47175 * 180.21932 * 6 4 3 37 37 H 1.09007 * 109.46284 * 300.21289 * 6 4 3 38 38 H 1.08991 * 109.68168 * 350.23807 * 10 9 7 39 39 H 1.09002 * 109.67735 * 110.78603 * 10 9 7 40 40 H 1.08996 * 109.50977 * 67.62655 * 11 10 9 41 41 H 1.08998 * 109.51244 * 187.72579 * 11 10 9 42 42 H 1.08997 * 109.46734 * 59.99623 * 15 13 12 43 43 H 1.09001 * 109.46871 * 180.02562 * 15 13 12 44 44 H 1.00899 * 111.00383 * 56.04728 * 16 15 13 45 45 H 1.09001 * 109.47108 * 300.00131 * 17 16 15 46 46 H 1.09008 * 109.47043 * 59.99668 * 17 16 15 47 47 H 0.96994 * 120.00259 * 359.97438 * 20 18 17 48 48 H 0.96991 * 119.99619 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.68263 * 249.21010 * 29 9 7 50 50 H 1.09001 * 109.68546 * 9.76409 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9387 1.5007 -1.4433 7 6 3.8347 2.7264 0.7098 8 8 2.9907 3.5331 1.0381 9 7 5.1332 2.9597 0.9852 10 6 6.1619 1.9467 0.7004 11 6 7.0109 1.7518 1.9619 12 8 7.4807 3.0240 2.4142 13 6 6.4424 3.9287 2.7978 14 1 5.8340 3.4744 3.5798 15 6 7.0624 5.2259 3.3213 16 7 7.9077 4.9294 4.4856 17 6 8.5216 6.1540 5.0160 18 6 9.3788 5.8111 6.2069 19 8 9.4691 4.6598 6.5778 20 7 10.0444 6.7839 6.8607 21 6 10.8247 6.4718 7.9439 22 1 10.9057 5.4466 8.2736 23 6 11.5113 7.4746 8.6175 24 7 11.4122 8.7222 8.2166 25 14 12.5750 7.0493 10.0930 26 1 13.6402 6.1014 9.6785 27 1 13.1949 8.2874 10.6296 28 1 11.7350 6.4211 11.1442 29 6 5.5650 4.2373 1.5739 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5090 2.3613 -1.9557 36 1 5.0256 1.5828 -1.4437 37 1 3.6432 0.5864 -1.9582 38 1 5.6846 1.0049 0.4299 39 1 6.7949 2.2867 -0.1193 40 1 6.4046 1.2895 2.7408 41 1 7.8611 1.1093 1.7328 42 1 7.6691 5.6805 2.5382 43 1 6.2702 5.9149 3.6140 44 1 8.6107 4.2428 4.2566 45 1 9.1385 6.6148 4.2444 46 1 7.7398 6.8502 5.3198 47 1 9.9719 7.7046 6.5644 48 1 11.8912 9.4222 8.6871 49 1 6.1390 4.8040 0.8408 50 1 4.6923 4.8131 1.8822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733731618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:42 Heat of formation + Delta-G solvation = -151.940887 kcal Electronic energy + Delta-G solvation = -30041.597070 eV Core-core repulsion = 25683.475676 eV Total energy + Delta-G solvation = -4358.121394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91962 -39.19265 -38.21786 -37.88292 -35.70046 -34.94978 -33.83002 -33.04686 -31.89059 -31.15848 -30.54629 -28.82717 -27.32685 -25.43778 -24.52723 -23.82955 -23.25097 -22.68946 -21.30249 -19.77345 -19.20496 -17.94307 -17.85282 -17.41623 -16.78886 -16.53960 -16.21969 -15.99023 -15.80022 -15.35693 -15.13023 -14.84574 -14.63074 -14.40910 -14.17615 -14.10535 -13.74060 -13.49182 -13.33746 -13.26751 -13.00528 -12.83200 -12.70617 -12.49914 -12.42376 -12.00480 -11.84705 -11.74313 -11.62502 -11.54963 -11.46141 -11.37595 -11.00132 -10.92120 -10.41813 -10.40216 -10.29371 -10.18223 -9.83216 -9.46686 -8.92152 -8.41645 -8.01886 -7.92129 -6.38356 -3.79093 2.18660 2.20915 3.22611 3.25188 3.27911 3.32503 3.44833 3.93732 3.95278 4.06362 4.23798 4.25439 4.39551 4.45976 4.53878 4.60440 4.70760 4.73532 4.80413 4.87543 4.93668 4.96442 4.98946 5.12449 5.18189 5.25429 5.28230 5.28657 5.32797 5.36822 5.44648 5.50095 5.55975 5.69219 5.70116 5.77537 5.88636 5.94669 6.01984 6.30407 6.58203 6.90725 6.91217 7.23673 7.58183 7.75229 7.76359 8.09809 8.65239 9.21289 9.58111 10.09973 10.79400 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.001604 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.437314 B =17455.585782 C =17484.311074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.085 0.915 6 C -0.173 4.173 7 C 0.518 3.482 8 O -0.514 6.514 9 N -0.614 5.614 10 C 0.068 3.932 11 C 0.049 3.951 12 O -0.369 6.369 13 C 0.082 3.918 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.085 3.915 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.358 0.642 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.078 0.922 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.392 -15.491 -22.596 31.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.103 0.897 6 C -0.230 4.230 7 C 0.305 3.695 8 O -0.388 6.388 9 N -0.351 5.351 10 C -0.055 4.055 11 C -0.029 4.029 12 O -0.288 6.288 13 C 0.023 3.977 14 H 0.094 0.906 15 C -0.061 4.061 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.037 4.037 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.127 0.873 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.178 0.822 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.180 -15.431 -21.628 31.107 hybrid contribution 1.153 0.274 -0.209 1.203 sum -15.027 -15.157 -21.836 30.534 Atomic orbital electron populations 1.21732 0.93231 1.02344 1.03532 1.22620 0.96158 0.83324 1.00133 1.88071 1.18082 1.26528 1.94933 1.21852 0.83980 0.96273 0.96771 0.89736 1.22286 1.01944 1.04002 0.94802 1.20398 0.81791 0.88183 0.79128 1.90734 1.49382 1.47448 1.51212 1.48054 1.06239 1.17348 1.63440 1.22631 0.91003 0.92332 0.99518 1.22935 0.99036 0.86556 0.94328 1.87991 1.32112 1.24068 1.84598 1.22650 0.89106 0.91442 0.94496 0.90641 1.21904 0.97890 0.94141 0.92134 1.60051 1.27621 1.11300 1.30932 1.21679 0.97614 0.92515 0.96450 1.19801 0.84560 0.86407 0.86514 1.90523 1.66992 1.20027 1.69106 1.41851 1.41747 1.08899 1.27612 1.19661 1.22240 0.95782 1.05250 0.87990 1.25255 0.98452 0.94753 0.99470 1.69607 1.43437 0.99772 1.41567 0.85913 0.79798 0.77519 0.80949 1.19947 1.21001 1.19917 1.22408 1.00181 0.85342 0.95803 0.91558 0.91699 0.90897 0.93129 0.93144 0.90918 0.90664 0.91010 0.88986 0.89971 0.92390 0.87342 0.94467 0.89442 0.82179 0.93801 0.89597 0.77455 0.91861 0.90333 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.05 0.35 6.47 37.16 0.24 0.59 16 3 O -0.36 -3.59 9.53 -55.00 -0.52 -4.11 16 4 C 0.07 0.57 2.29 -27.88 -0.06 0.51 16 5 H 0.08 0.46 6.62 -51.93 -0.34 0.11 16 6 C -0.17 -0.95 9.24 37.16 0.34 -0.61 16 7 C 0.52 5.74 7.06 -10.98 -0.08 5.66 16 8 O -0.51 -7.98 15.99 -14.22 -0.23 -8.21 16 9 N -0.61 -5.65 3.01 -172.02 -0.52 -6.17 16 10 C 0.07 0.42 5.18 -3.53 -0.02 0.40 16 11 C 0.05 0.38 6.98 37.31 0.26 0.64 16 12 O -0.37 -4.25 9.72 -35.23 -0.34 -4.59 16 13 C 0.08 0.94 3.06 -26.36 -0.08 0.85 16 14 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.07 0.87 5.43 -3.82 -0.02 0.85 16 16 N -0.67 -11.21 6.13 -115.06 -0.70 -11.91 16 17 C 0.05 0.91 6.17 -4.98 -0.03 0.87 16 18 C 0.44 10.68 7.82 -10.99 -0.09 10.59 16 19 O -0.58 -16.19 15.78 5.55 0.09 -16.10 16 20 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 21 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.09 0.86 5.97 -3.32 -0.02 0.84 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.23 7.87 -51.93 -0.41 -0.18 16 34 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.30 6.25 -51.93 -0.32 -0.02 16 37 H 0.07 0.29 7.87 -51.93 -0.41 -0.12 16 38 H 0.09 0.33 5.29 -51.93 -0.27 0.05 16 39 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.36 6.46 7.82 -39.29 -0.31 6.15 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 LS Contribution 406.57 15.07 6.13 6.13 Total: -1.00 -36.09 406.57 -8.05 -44.14 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.18 Total: 10.68 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 0.59 Total: 12.57 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.56 Total: -56.74 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.01 Total: -33.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.09 -8.05 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733731618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.801 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds