Wall clock time and date at job start Wed Apr 1 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00062 * 2 1 4 4 H 1.09004 * 109.47203 * 29.99954 * 3 2 1 5 5 C 1.53002 * 109.47424 * 270.00307 * 3 2 1 6 6 C 1.50699 * 109.47505 * 149.99927 * 3 2 1 7 7 O 1.21282 * 119.99680 * 5.00420 * 6 3 2 8 8 N 1.34773 * 120.00632 * 185.00205 * 6 3 2 9 9 C 1.46492 * 120.00413 * 174.69002 * 8 6 3 10 10 C 1.53006 * 109.54366 * 304.03865 * 9 8 6 11 11 N 1.46902 * 109.46795 * 305.28001 * 10 9 8 12 12 C 1.46900 * 110.99355 * 174.73828 * 11 10 9 13 13 C 1.50704 * 109.46912 * 179.97438 * 12 11 10 14 14 O 1.21297 * 119.99525 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00113 * 180.02562 * 13 12 11 16 16 C 1.37103 * 120.00073 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99736 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00254 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46885 * 59.99176 * 20 18 16 22 22 H 1.48497 * 109.47256 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46536 * 299.99475 * 20 18 16 24 24 C 1.53177 * 109.54394 * 64.21717 * 9 8 6 25 25 C 1.53101 * 109.15685 * 63.06698 * 24 9 8 26 26 O 1.42900 * 109.48943 * 57.47348 * 25 24 9 27 27 C 1.42897 * 114.09737 * 298.89030 * 26 25 24 28 28 C 1.53092 * 109.41813 * 61.15919 * 27 26 25 29 29 H 1.08998 * 109.47337 * 60.00023 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47247 * 299.99443 * 1 2 3 32 32 H 1.09002 * 109.47050 * 299.99653 * 5 3 2 33 33 H 1.09006 * 109.47083 * 60.00106 * 5 3 2 34 34 H 1.09004 * 109.47164 * 179.97438 * 5 3 2 35 35 H 0.97008 * 119.99613 * 354.68575 * 8 6 3 36 36 H 1.08997 * 109.47034 * 185.27921 * 10 9 8 37 37 H 1.09001 * 109.46800 * 65.27585 * 10 9 8 38 38 H 1.00900 * 110.99998 * 298.68667 * 11 10 9 39 39 H 1.08996 * 109.47672 * 60.00167 * 12 11 10 40 40 H 1.08999 * 109.47466 * 299.99257 * 12 11 10 41 41 H 0.96997 * 120.00318 * 359.97438 * 15 13 12 42 42 H 0.96998 * 120.00126 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.52196 * 182.88537 * 24 9 8 44 44 H 1.09000 * 109.52236 * 303.06821 * 24 9 8 45 45 H 1.09001 * 109.40317 * 297.49083 * 25 24 9 46 46 H 1.09007 * 109.49072 * 177.50736 * 25 24 9 47 47 H 1.09000 * 109.48094 * 301.17221 * 27 26 25 48 48 H 1.09004 * 109.48851 * 181.14588 * 27 26 25 49 49 H 1.08994 * 109.52368 * 182.48795 * 28 27 26 50 50 H 1.09000 * 109.57732 * 62.32317 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9224 9 6 5.2581 2.3802 1.7135 10 6 4.9723 1.7730 3.0885 11 7 3.8738 2.5081 3.7296 12 6 3.4875 1.8763 4.9983 13 6 2.3612 2.6567 5.6256 14 8 1.9232 3.6420 5.0702 15 7 1.8408 2.2599 6.8038 16 6 0.8158 2.9696 7.3743 17 1 0.4257 3.8469 6.8797 18 6 0.2796 2.5608 8.5892 19 7 0.7546 1.4936 9.1911 20 14 -1.1165 3.5281 9.3668 21 1 -2.2819 3.5418 8.4465 22 1 -1.5066 2.8898 10.6496 23 1 -0.6709 4.9215 9.6220 24 6 6.3144 1.5383 0.9912 25 6 6.6529 2.1982 -0.3483 26 8 7.1076 3.5336 -0.1205 27 6 6.1428 4.3791 0.5088 28 6 5.7855 3.8083 1.8837 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.8829 1.0776 -1.9564 33 1 1.2567 1.8016 -1.9563 34 1 2.6606 2.7674 -1.4424 35 1 3.7035 3.2403 0.5511 36 1 5.8659 1.8413 3.7088 37 1 4.6899 0.7267 2.9720 38 1 4.1195 3.4769 3.8682 39 1 4.3425 1.8660 5.6743 40 1 3.1606 0.8536 4.8102 41 1 2.1909 1.4717 7.2478 42 1 0.3800 1.2079 10.0391 43 1 7.2139 1.4784 1.6039 44 1 5.9242 0.5357 0.8166 45 1 5.7624 2.2196 -0.9766 46 1 7.4363 1.6275 -0.8472 47 1 5.2457 4.4291 -0.1083 48 1 6.5585 5.3797 0.6276 49 1 5.0173 4.4275 2.3467 50 1 6.6733 3.7958 2.5159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733827890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:08 Heat of formation + Delta-G solvation = -158.508193 kcal Electronic energy + Delta-G solvation = -32048.303824 eV Core-core repulsion = 27689.897650 eV Total energy + Delta-G solvation = -4358.406174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93284 -39.06804 -38.24343 -37.52333 -36.09673 -34.32001 -33.69652 -32.54434 -31.39365 -31.20578 -30.69134 -28.10198 -26.89211 -25.68724 -24.38547 -24.09242 -23.62443 -22.08029 -20.92766 -19.42827 -19.15777 -17.89558 -17.76659 -16.90832 -16.51707 -16.25354 -16.20211 -15.63735 -15.48546 -15.13192 -14.95796 -14.80190 -14.56076 -14.45505 -14.15427 -13.78040 -13.46575 -13.38813 -13.17191 -13.07162 -12.92863 -12.66572 -12.50774 -12.40664 -12.10306 -11.90838 -11.71944 -11.56050 -11.51998 -11.45612 -11.27438 -11.02004 -10.79863 -10.62222 -10.45337 -10.22004 -10.01159 -9.82447 -9.50287 -9.30876 -8.96027 -8.43461 -8.02704 -7.95231 -6.41548 -3.82690 2.68925 2.86830 3.18993 3.24830 3.28812 3.64699 3.86827 3.91638 4.07762 4.26907 4.38442 4.59741 4.62370 4.70917 4.76845 4.86360 4.92733 4.94692 5.14195 5.16055 5.18620 5.25981 5.27604 5.32817 5.38569 5.43425 5.49474 5.51561 5.56383 5.61804 5.62212 5.79373 5.81934 5.82944 5.86589 5.97256 6.02527 6.07979 6.28153 6.51563 6.93032 6.95800 7.22214 7.54287 7.54504 7.69715 8.05861 8.32080 8.61270 9.17331 9.54662 10.05894 10.76139 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.002992 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.699785 B = 9355.474982 C =10866.177622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.067 3.933 4 H 0.090 0.910 5 C -0.169 4.169 6 C 0.531 3.469 7 O -0.519 6.519 8 N -0.706 5.706 9 C 0.190 3.810 10 C 0.045 3.955 11 N -0.660 5.660 12 C 0.052 3.948 13 C 0.442 3.558 14 O -0.586 6.586 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.166 4.166 25 C 0.066 3.934 26 O -0.383 6.383 27 C 0.063 3.937 28 C -0.164 4.164 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.343 0.657 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 1.174 -20.244 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.006 3.994 4 H 0.108 0.892 5 C -0.227 4.227 6 C 0.317 3.683 7 O -0.394 6.394 8 N -0.359 5.359 9 C 0.103 3.897 10 C -0.085 4.085 11 N -0.293 5.293 12 C -0.081 4.081 13 C 0.228 3.772 14 O -0.471 6.471 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.205 4.205 25 C -0.011 4.011 26 O -0.302 6.302 27 C -0.014 4.014 28 C -0.202 4.202 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.162 0.838 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.067 0.933 48 H 0.114 0.886 49 H 0.108 0.892 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.497 0.535 -20.529 22.225 hybrid contribution -0.521 0.702 1.409 1.658 sum 7.976 1.238 -19.120 20.754 Atomic orbital electron populations 1.22881 0.80586 1.03154 1.00194 1.88015 1.19699 1.25102 1.94906 1.21945 0.94097 0.87164 0.96243 0.89188 1.22229 1.03303 1.01607 0.95529 1.20084 0.85387 0.83937 0.78928 1.90626 1.68620 1.29955 1.50181 1.45705 1.25549 1.10082 1.54559 1.20255 0.83600 0.95052 0.90752 1.22406 0.92745 1.00637 0.92718 1.59970 1.39057 1.05948 1.24281 1.21648 0.97045 0.99158 0.90201 1.19804 0.86711 0.87601 0.83087 1.90495 1.64190 1.28847 1.63531 1.41859 1.32309 1.27297 1.18481 1.19639 1.10602 1.09830 1.02930 0.88034 1.25264 0.99186 0.96718 0.96748 1.69607 1.42749 1.24083 1.17799 0.85921 0.80824 0.79369 0.78112 1.19910 1.20961 1.19929 1.22597 0.98842 1.01558 0.97512 1.22516 0.99733 0.82879 0.95946 1.87931 1.40514 1.21742 1.80029 1.22547 0.92578 0.94216 0.92055 1.22538 1.02783 0.95732 0.99133 0.94097 0.89263 0.93364 0.91284 0.91326 0.91245 0.76901 0.94904 0.88586 0.83763 0.94053 0.89665 0.77448 0.91799 0.90366 0.88464 0.93224 0.88984 0.93277 0.88554 0.89239 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.36 -4.96 9.89 -55.09 -0.54 -5.51 16 3 C 0.07 0.78 3.13 -27.88 -0.09 0.69 16 4 H 0.09 1.01 7.79 -51.93 -0.40 0.61 16 5 C -0.17 -1.37 9.47 37.16 0.35 -1.02 16 6 C 0.53 7.11 6.59 -10.99 -0.07 7.04 16 7 O -0.52 -8.77 12.81 -14.30 -0.18 -8.95 16 8 N -0.71 -7.57 3.96 -47.44 -0.19 -7.76 16 9 C 0.19 2.06 0.43 -131.63 -0.06 2.00 16 10 C 0.05 0.61 4.29 -3.82 -0.02 0.60 16 11 N -0.66 -10.62 5.80 -115.05 -0.67 -11.29 16 12 C 0.05 0.96 6.16 -4.97 -0.03 0.93 16 13 C 0.44 10.54 7.82 -10.99 -0.09 10.45 16 14 O -0.59 -15.66 15.78 5.54 0.09 -15.57 16 15 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 16 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 20 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.17 -1.73 4.82 -26.59 -0.13 -1.85 16 25 C 0.07 0.61 6.68 37.21 0.25 0.86 16 26 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 27 C 0.06 0.51 6.67 37.20 0.25 0.76 16 28 C -0.16 -1.49 4.68 -26.59 -0.12 -1.61 16 29 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.48 7.87 -51.93 -0.41 0.08 16 34 H 0.07 0.43 7.76 -51.93 -0.40 0.02 16 35 H 0.40 3.43 7.02 -40.82 -0.29 3.14 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 1.53 6.23 -51.93 -0.32 1.21 16 38 H 0.34 5.48 6.98 -39.29 -0.27 5.20 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.20 6.25 -51.93 -0.32 0.87 16 45 H 0.05 0.44 7.75 -51.93 -0.40 0.04 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.34 7.02 -51.93 -0.36 -0.02 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 0.84 6.98 -51.93 -0.36 0.48 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -34.15 399.18 -7.14 -41.28 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -8.02 Total: 16.33 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 1.10 Total: 12.18 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.19 Total: -57.63 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.02 Total: -34.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.15 -7.14 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733827890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.224 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds