Wall clock time and date at job start Wed Apr 1 2020 02:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00062 * 2 1 4 4 H 1.09004 * 109.47203 * 29.99954 * 3 2 1 5 5 C 1.53002 * 109.47424 * 270.00307 * 3 2 1 6 6 C 1.50699 * 109.47505 * 149.99927 * 3 2 1 7 7 O 1.21282 * 119.99680 * 5.00420 * 6 3 2 8 8 N 1.34773 * 120.00632 * 185.00205 * 6 3 2 9 9 C 1.46492 * 120.00413 * 174.69002 * 8 6 3 10 10 C 1.53006 * 109.54366 * 304.03865 * 9 8 6 11 11 N 1.46902 * 109.46795 * 305.28001 * 10 9 8 12 12 C 1.46900 * 110.99355 * 174.73828 * 11 10 9 13 13 C 1.50704 * 109.46912 * 179.97438 * 12 11 10 14 14 O 1.21297 * 119.99525 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00113 * 180.02562 * 13 12 11 16 16 C 1.37103 * 120.00073 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99736 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00254 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46885 * 59.99176 * 20 18 16 22 22 H 1.48497 * 109.47256 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46536 * 299.99475 * 20 18 16 24 24 C 1.53177 * 109.54394 * 64.21717 * 9 8 6 25 25 C 1.53101 * 109.15685 * 63.06698 * 24 9 8 26 26 O 1.42900 * 109.48943 * 57.47348 * 25 24 9 27 27 C 1.42897 * 114.09737 * 298.89030 * 26 25 24 28 28 C 1.53092 * 109.41813 * 61.15919 * 27 26 25 29 29 H 1.08998 * 109.47337 * 60.00023 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47247 * 299.99443 * 1 2 3 32 32 H 1.09002 * 109.47050 * 299.99653 * 5 3 2 33 33 H 1.09006 * 109.47083 * 60.00106 * 5 3 2 34 34 H 1.09004 * 109.47164 * 179.97438 * 5 3 2 35 35 H 0.97008 * 119.99613 * 354.68575 * 8 6 3 36 36 H 1.08997 * 109.47034 * 185.27921 * 10 9 8 37 37 H 1.09001 * 109.46800 * 65.27585 * 10 9 8 38 38 H 1.00900 * 110.99998 * 298.68667 * 11 10 9 39 39 H 1.08996 * 109.47672 * 60.00167 * 12 11 10 40 40 H 1.08999 * 109.47466 * 299.99257 * 12 11 10 41 41 H 0.96997 * 120.00318 * 359.97438 * 15 13 12 42 42 H 0.96998 * 120.00126 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.52196 * 182.88537 * 24 9 8 44 44 H 1.09000 * 109.52236 * 303.06821 * 24 9 8 45 45 H 1.09001 * 109.40317 * 297.49083 * 25 24 9 46 46 H 1.09007 * 109.49072 * 177.50736 * 25 24 9 47 47 H 1.09000 * 109.48094 * 301.17221 * 27 26 25 48 48 H 1.09004 * 109.48851 * 181.14588 * 27 26 25 49 49 H 1.08994 * 109.52368 * 182.48795 * 28 27 26 50 50 H 1.09000 * 109.57732 * 62.32317 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9224 9 6 5.2581 2.3802 1.7135 10 6 4.9723 1.7730 3.0885 11 7 3.8738 2.5081 3.7296 12 6 3.4875 1.8763 4.9983 13 6 2.3612 2.6567 5.6256 14 8 1.9232 3.6420 5.0702 15 7 1.8408 2.2599 6.8038 16 6 0.8158 2.9696 7.3743 17 1 0.4257 3.8469 6.8797 18 6 0.2796 2.5608 8.5892 19 7 0.7546 1.4936 9.1911 20 14 -1.1165 3.5281 9.3668 21 1 -2.2819 3.5418 8.4465 22 1 -1.5066 2.8898 10.6496 23 1 -0.6709 4.9215 9.6220 24 6 6.3144 1.5383 0.9912 25 6 6.6529 2.1982 -0.3483 26 8 7.1076 3.5336 -0.1205 27 6 6.1428 4.3791 0.5088 28 6 5.7855 3.8083 1.8837 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.8829 1.0776 -1.9564 33 1 1.2567 1.8016 -1.9563 34 1 2.6606 2.7674 -1.4424 35 1 3.7035 3.2403 0.5511 36 1 5.8659 1.8413 3.7088 37 1 4.6899 0.7267 2.9720 38 1 4.1195 3.4769 3.8682 39 1 4.3425 1.8660 5.6743 40 1 3.1606 0.8536 4.8102 41 1 2.1909 1.4717 7.2478 42 1 0.3800 1.2079 10.0391 43 1 7.2139 1.4784 1.6039 44 1 5.9242 0.5357 0.8166 45 1 5.7624 2.2196 -0.9766 46 1 7.4363 1.6275 -0.8472 47 1 5.2457 4.4291 -0.1083 48 1 6.5585 5.3797 0.6276 49 1 5.0173 4.4275 2.3467 50 1 6.6733 3.7958 2.5159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733827890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:07 Heat of formation + Delta-G solvation = -185.771296 kcal Electronic energy + Delta-G solvation = -32049.486041 eV Core-core repulsion = 27689.897650 eV Total energy + Delta-G solvation = -4359.588391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85843 -40.16152 -39.91459 -38.46306 -37.25532 -36.02203 -35.21000 -33.51719 -33.24681 -32.12059 -31.51392 -29.45270 -27.71050 -27.22658 -25.62583 -25.14860 -24.55252 -23.11739 -21.80739 -21.15372 -20.27099 -19.92547 -18.67403 -18.06585 -17.71087 -17.22191 -17.11044 -16.91246 -16.52311 -16.45212 -16.08976 -16.00525 -15.89445 -15.72257 -15.38572 -15.13679 -14.90669 -14.50572 -14.22832 -14.14165 -13.80907 -13.61452 -13.49689 -13.40363 -13.28719 -13.26778 -13.04670 -12.84107 -12.77665 -12.66783 -12.44807 -12.28246 -12.13812 -12.10992 -11.66090 -11.51132 -11.38591 -10.92652 -10.60631 -10.39571 -10.29933 -10.03966 -9.88577 -9.36202 -8.47883 -5.97392 1.38759 1.40552 1.51961 1.68510 1.96169 2.01864 2.27360 2.82598 2.97564 3.04359 3.18925 3.48453 3.51235 3.76094 3.78956 3.88998 3.96337 4.04582 4.11488 4.25338 4.27841 4.36832 4.42508 4.43892 4.47985 4.50074 4.51471 4.62939 4.67601 4.70358 4.80703 4.81551 4.82373 4.83101 4.93355 5.07433 5.09958 5.14741 5.18213 5.38620 5.58169 5.81344 6.03404 6.07189 6.26583 6.42011 6.56894 6.65067 7.09662 7.35040 7.53041 8.06986 8.69467 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.002992 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.699785 B = 9355.474982 C =10866.177622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.063 3.937 4 H 0.092 0.908 5 C -0.160 4.160 6 C 0.524 3.476 7 O -0.561 6.561 8 N -0.693 5.693 9 C 0.190 3.810 10 C 0.050 3.950 11 N -0.664 5.664 12 C 0.066 3.934 13 C 0.442 3.558 14 O -0.616 6.616 15 N -0.573 5.573 16 C -0.334 4.334 17 H 0.082 0.918 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.160 4.160 25 C 0.070 3.930 26 O -0.394 6.394 27 C 0.061 3.939 28 C -0.157 4.157 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.346 0.654 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.394 0.606 42 H 0.278 0.722 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.063 0.937 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 2.513 -21.138 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.001 3.999 4 H 0.109 0.891 5 C -0.217 4.217 6 C 0.310 3.690 7 O -0.439 6.439 8 N -0.346 5.346 9 C 0.104 3.896 10 C -0.080 4.080 11 N -0.297 5.297 12 C -0.066 4.066 13 C 0.229 3.771 14 O -0.503 6.503 15 N -0.210 5.210 16 C -0.464 4.464 17 H 0.100 0.900 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.818 3.182 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.199 4.199 25 C -0.007 4.007 26 O -0.313 6.313 27 C -0.015 4.015 28 C -0.195 4.195 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.165 0.835 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.120 0.880 47 H 0.081 0.919 48 H 0.131 0.869 49 H 0.107 0.893 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.718 1.896 -21.441 23.223 hybrid contribution -0.556 0.267 1.673 1.783 sum 8.162 2.163 -19.767 21.495 Atomic orbital electron populations 1.23014 0.79232 1.03967 1.00889 1.87967 1.21341 1.26602 1.95187 1.22121 0.92926 0.86527 0.98287 0.89063 1.22194 1.04204 1.02444 0.92892 1.20544 0.86032 0.83858 0.78546 1.90610 1.69769 1.31515 1.51982 1.45629 1.25219 1.09991 1.53788 1.20271 0.83805 0.96315 0.89236 1.22385 0.92175 0.99142 0.94320 1.59929 1.40577 1.06170 1.23000 1.21459 0.95684 0.98106 0.91397 1.20674 0.87018 0.87210 0.82206 1.90463 1.65351 1.30324 1.64114 1.41941 1.32403 1.27414 1.19260 1.19661 1.12328 1.10295 1.04084 0.89983 1.26093 1.01190 0.97511 0.96596 1.69681 1.43622 1.24882 1.18129 0.84961 0.77633 0.78132 0.77457 1.19617 1.19641 1.19408 1.22510 0.98560 1.00425 0.98407 1.22507 1.00291 0.82802 0.95061 1.87928 1.41337 1.21912 1.80139 1.22695 0.93063 0.94494 0.91279 1.22495 1.02726 0.94126 1.00131 0.91501 0.88540 0.94465 0.91958 0.89867 0.88915 0.75474 0.93531 0.91071 0.83456 0.91890 0.89688 0.77229 0.91295 0.89969 0.90605 0.92874 0.87971 0.91895 0.86896 0.89302 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.82 113.37 1.23 1.74 16 2 O -0.39 -10.92 9.89 -129.99 -1.29 -12.20 16 3 C 0.06 1.43 3.13 29.85 0.09 1.52 16 4 H 0.09 2.01 7.79 -2.39 -0.02 1.99 16 5 C -0.16 -2.31 9.47 71.98 0.68 -1.63 16 6 C 0.52 14.02 6.59 87.66 0.58 14.59 16 7 O -0.56 -19.53 12.81 15.95 0.20 -19.33 16 8 N -0.69 -14.19 3.96 -422.38 -1.67 -15.86 16 9 C 0.19 3.93 0.43 3.73 0.00 3.94 16 10 C 0.05 1.32 4.29 86.30 0.37 1.69 16 11 N -0.66 -21.04 5.80 -517.92 -3.00 -24.04 16 12 C 0.07 2.43 6.16 85.56 0.53 2.96 16 13 C 0.44 21.28 7.82 87.66 0.69 21.96 16 14 O -0.62 -33.34 15.78 -3.08 -0.05 -33.39 16 15 N -0.57 -30.00 5.29 -306.97 -1.62 -31.62 16 16 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 17 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 19 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 20 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 C -0.16 -3.20 4.82 30.69 0.15 -3.05 16 25 C 0.07 1.17 6.68 72.02 0.48 1.66 16 26 O -0.39 -6.96 10.77 -148.98 -1.60 -8.56 16 27 C 0.06 0.82 6.67 72.01 0.48 1.30 16 28 C -0.16 -2.53 4.68 30.69 0.14 -2.38 16 29 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.97 7.87 -2.38 -0.02 0.95 16 34 H 0.09 0.88 7.76 -2.38 -0.02 0.86 16 35 H 0.41 6.29 7.02 -92.70 -0.65 5.64 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.07 2.32 6.23 -2.39 -0.01 2.30 16 38 H 0.35 10.72 6.98 -89.69 -0.63 10.09 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.39 19.96 7.90 -92.71 -0.73 19.22 16 42 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.90 6.25 -2.39 -0.01 1.88 16 45 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 46 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.06 0.68 7.02 -2.39 -0.02 0.66 16 48 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.09 1.48 6.98 -2.39 -0.02 1.47 16 50 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.66 399.18 -1.05 -75.72 By element: Atomic # 1 Polarization: 49.93 SS G_CDS: -1.03 Total: 48.90 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 6.70 Total: 25.75 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.02 Total: -121.81 kcal Atomic # 8 Polarization: -70.74 SS G_CDS: -2.73 Total: -73.48 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.66 -1.05 -75.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733827890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.054 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds