Wall clock time and date at job start Wed Apr 1 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 114.00162 * 2 1 4 4 H 1.09005 * 109.47249 * 329.99930 * 3 2 1 5 5 C 1.53001 * 109.47286 * 89.99993 * 3 2 1 6 6 C 1.50699 * 109.47580 * 209.99822 * 3 2 1 7 7 O 1.21282 * 119.99680 * 355.00159 * 6 3 2 8 8 N 1.34773 * 120.00632 * 174.99943 * 6 3 2 9 9 C 1.46497 * 120.00583 * 174.68439 * 8 6 3 10 10 C 1.53004 * 109.53977 * 304.07434 * 9 8 6 11 11 N 1.46900 * 109.46985 * 305.27413 * 10 9 8 12 12 C 1.46903 * 110.99934 * 174.75239 * 11 10 9 13 13 C 1.50700 * 109.47038 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00092 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.37089 * 119.99878 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00037 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00324 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00413 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99802 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46687 * 90.00513 * 20 18 16 22 22 H 1.48489 * 109.47607 * 210.00393 * 20 18 16 23 23 H 1.48503 * 109.47369 * 330.00931 * 20 18 16 24 24 C 1.53181 * 109.54466 * 64.24781 * 9 8 6 25 25 C 1.53112 * 109.15417 * 63.06615 * 24 9 8 26 26 O 1.42899 * 109.48357 * 57.47325 * 25 24 9 27 27 C 1.42899 * 114.10497 * 298.88770 * 26 25 24 28 28 C 1.53095 * 109.41442 * 61.15542 * 27 26 25 29 29 H 1.09008 * 109.47078 * 59.99966 * 1 2 3 30 30 H 1.09007 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47523 * 299.99772 * 1 2 3 32 32 H 1.09007 * 109.47188 * 300.00470 * 5 3 2 33 33 H 1.09005 * 109.47028 * 59.99802 * 5 3 2 34 34 H 1.09001 * 109.47339 * 180.02562 * 5 3 2 35 35 H 0.97008 * 119.99613 * 354.68575 * 8 6 3 36 36 H 1.09002 * 109.46901 * 185.27719 * 10 9 8 37 37 H 1.08998 * 109.46970 * 65.27584 * 10 9 8 38 38 H 1.00896 * 111.00006 * 298.70411 * 11 10 9 39 39 H 1.08999 * 109.47053 * 59.99580 * 12 11 10 40 40 H 1.09004 * 109.46606 * 300.00063 * 12 11 10 41 41 H 0.96992 * 119.99857 * 359.97438 * 15 13 12 42 42 H 0.96998 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.52169 * 182.88527 * 24 9 8 44 44 H 1.08998 * 109.51972 * 303.07727 * 24 9 8 45 45 H 1.09001 * 109.40577 * 297.49745 * 25 24 9 46 46 H 1.08994 * 109.49027 * 177.51141 * 25 24 9 47 47 H 1.08997 * 109.47749 * 301.17802 * 27 26 25 48 48 H 1.08997 * 109.49422 * 181.14714 * 27 26 25 49 49 H 1.08998 * 109.52270 * 182.48922 * 28 27 26 50 50 H 1.09006 * 109.57298 * 62.33387 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2639 -0.7103 7 8 3.7897 0.2045 -1.0913 8 7 4.0255 2.4039 -0.9223 9 6 5.3676 2.3526 -1.5073 10 6 6.2619 1.4473 -0.6577 11 7 6.2432 1.9097 0.7365 12 6 6.9913 0.9916 1.6057 13 6 6.9495 1.4973 3.0247 14 8 6.3555 2.5218 3.2861 15 7 7.5723 0.8109 4.0033 16 6 7.5348 1.2711 5.2940 17 1 7.0065 2.1839 5.5268 18 6 8.1773 0.5639 6.3029 19 7 8.1409 1.0047 7.5403 20 14 9.0916 -1.0145 5.9003 21 1 10.5030 -0.6971 5.5649 22 1 9.0541 -1.9218 7.0752 23 1 8.4448 -1.6794 4.7406 24 6 5.2845 1.7985 -2.9329 25 6 4.4546 2.7534 -3.7954 26 8 5.0445 4.0546 -3.7684 27 6 5.1040 4.6416 -2.4669 28 6 5.9616 3.7638 -1.5516 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.2568 1.8013 1.9564 33 1 2.8829 1.0773 1.9564 34 1 2.6606 2.7673 1.4425 35 1 3.6311 3.2585 -0.6875 36 1 7.2824 1.4836 -1.0389 37 1 5.8923 0.4230 -0.7058 38 1 6.6014 2.8501 0.8104 39 1 8.0268 0.9359 1.2697 40 1 6.5407 0.0001 1.5602 41 1 8.0471 -0.0086 3.7942 42 1 8.5891 0.5108 8.2445 43 1 6.2880 1.7124 -3.3494 44 1 4.8110 0.8169 -2.9151 45 1 3.4392 2.8064 -3.4027 46 1 4.4288 2.3871 -4.8217 47 1 4.0971 4.7192 -2.0569 48 1 5.5460 5.6355 -2.5360 49 1 5.9720 4.1863 -0.5469 50 1 6.9798 3.7185 -1.9383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733827910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:11 Heat of formation + Delta-G solvation = -180.184539 kcal Electronic energy + Delta-G solvation = -32191.658943 eV Core-core repulsion = 27832.312813 eV Total energy + Delta-G solvation = -4359.346131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.84961 -40.27972 -39.92898 -38.45851 -37.25684 -36.04582 -35.21281 -33.75726 -33.47282 -32.11662 -31.49976 -29.55005 -27.68261 -27.24268 -25.51162 -25.11516 -24.50836 -23.09682 -21.81257 -21.31135 -20.41160 -20.16276 -18.60220 -18.02391 -17.75786 -17.28220 -17.03340 -16.92639 -16.66760 -16.50907 -16.17324 -15.91650 -15.82618 -15.51885 -15.33999 -15.07123 -14.88707 -14.58631 -14.34226 -14.22080 -14.06955 -13.68369 -13.57929 -13.49456 -13.31627 -13.24286 -13.06151 -12.85748 -12.81005 -12.62945 -12.43578 -12.27817 -12.09705 -12.01022 -11.64471 -11.52379 -11.39098 -10.89512 -10.61483 -10.45489 -10.28885 -10.25518 -9.88781 -9.33266 -8.42777 -6.02706 1.29137 1.32304 1.41525 1.65905 1.93577 1.99486 2.20607 2.66785 2.96810 3.04895 3.13834 3.37882 3.52406 3.77194 3.80230 3.88160 3.94825 4.04544 4.07815 4.13128 4.26935 4.34808 4.42292 4.45820 4.47301 4.50777 4.54815 4.63711 4.68223 4.70568 4.80191 4.81598 4.83934 4.85297 4.95062 5.07431 5.10504 5.15573 5.25779 5.50230 5.59506 5.86358 5.98379 6.11169 6.26367 6.42659 6.58172 6.65545 6.86420 7.35200 7.38285 7.93247 8.74621 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003175 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.431183 B = 8817.386765 C =10265.006937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.072 3.928 4 H 0.116 0.884 5 C -0.158 4.158 6 C 0.524 3.476 7 O -0.559 6.559 8 N -0.694 5.694 9 C 0.190 3.810 10 C 0.051 3.949 11 N -0.666 5.666 12 C 0.063 3.937 13 C 0.454 3.546 14 O -0.604 6.604 15 N -0.593 5.593 16 C -0.325 4.325 17 H 0.060 0.940 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.960 3.040 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.239 1.239 24 C -0.159 4.159 25 C 0.069 3.931 26 O -0.395 6.395 27 C 0.060 3.940 28 C -0.157 4.157 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.346 0.654 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.387 0.613 42 H 0.279 0.721 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.102 0.898 47 H 0.061 0.939 48 H 0.112 0.888 49 H 0.088 0.912 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 2.505 -24.700 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.011 3.989 4 H 0.133 0.867 5 C -0.216 4.216 6 C 0.310 3.690 7 O -0.437 6.437 8 N -0.347 5.347 9 C 0.103 3.897 10 C -0.079 4.079 11 N -0.299 5.299 12 C -0.070 4.070 13 C 0.241 3.759 14 O -0.488 6.488 15 N -0.235 5.235 16 C -0.454 4.454 17 H 0.078 0.922 18 C -0.211 4.211 19 N -0.573 5.573 20 Si 0.780 3.220 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.162 1.162 24 C -0.198 4.198 25 C -0.007 4.007 26 O -0.314 6.314 27 C -0.016 4.016 28 C -0.195 4.195 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.166 0.834 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.222 0.778 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.130 0.870 49 H 0.107 0.893 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.454 2.058 -24.587 26.796 hybrid contribution 1.066 -0.382 0.968 1.490 sum -9.389 1.676 -23.619 25.471 Atomic orbital electron populations 1.23069 0.78925 1.04034 1.01304 1.88016 1.21731 1.26543 1.95118 1.22026 0.93282 0.86779 0.96767 0.86683 1.22089 1.02880 1.01986 0.94598 1.20519 0.86545 0.83869 0.78047 1.90605 1.70320 1.31355 1.51448 1.45646 1.16567 1.08625 1.63855 1.20283 0.81891 0.95847 0.91657 1.22376 0.98198 1.00241 0.87104 1.59902 1.58671 1.05239 1.06122 1.21549 0.98537 0.97770 0.89125 1.20772 0.81781 0.85516 0.87802 1.90515 1.46854 1.27198 1.84235 1.42062 1.49733 1.24681 1.07018 1.19006 1.33433 1.09448 0.83562 0.92228 1.26029 0.98282 1.02544 0.94257 1.69788 1.44429 1.41721 1.01370 0.85428 0.79446 0.77553 0.79524 1.17970 1.19934 1.16240 1.22509 1.02623 1.00642 0.94074 1.22512 0.95233 0.82199 1.00788 1.87928 1.82419 1.31630 1.29412 1.22691 0.99474 0.96892 0.82543 1.22492 1.01330 0.93475 1.02165 0.92192 0.88785 0.92718 0.90194 0.94697 0.89891 0.75516 0.93234 0.90824 0.83424 0.90805 0.88881 0.77782 0.91147 0.89836 0.90494 0.93089 0.87967 0.92040 0.87017 0.89318 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.40 -10.29 9.89 -129.99 -1.28 -11.57 16 3 C 0.07 1.57 3.13 29.85 0.09 1.66 16 4 H 0.12 1.57 7.79 -2.38 -0.02 1.56 16 5 C -0.16 -3.73 9.48 71.98 0.68 -3.04 16 6 C 0.52 13.22 6.59 87.66 0.58 13.80 16 7 O -0.56 -18.39 12.81 15.95 0.20 -18.19 16 8 N -0.69 -13.30 3.96 -422.39 -1.67 -14.97 16 9 C 0.19 3.60 0.43 3.72 0.00 3.60 16 10 C 0.05 1.21 4.29 86.30 0.37 1.58 16 11 N -0.67 -19.35 5.80 -517.91 -3.00 -22.35 16 12 C 0.06 2.06 6.16 85.56 0.53 2.58 16 13 C 0.45 20.63 7.82 87.66 0.69 21.31 16 14 O -0.60 -32.42 15.78 -3.04 -0.05 -32.47 16 15 N -0.59 -28.55 5.09 -306.99 -1.56 -30.11 16 16 C -0.33 -19.13 10.16 84.04 0.85 -18.28 16 17 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 18 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 19 N -0.93 -56.35 13.96 21.66 0.30 -56.05 16 20 Si 0.96 39.80 27.74 68.60 1.90 41.70 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.24 -8.66 6.52 99.48 0.65 -8.01 16 24 C -0.16 -2.93 4.82 30.69 0.15 -2.78 16 25 C 0.07 1.09 6.68 72.02 0.48 1.57 16 26 O -0.39 -6.69 10.77 -148.98 -1.60 -8.29 16 27 C 0.06 0.78 6.67 72.01 0.48 1.26 16 28 C -0.16 -2.33 4.68 30.68 0.14 -2.19 16 29 H 0.06 0.72 8.09 -2.38 -0.02 0.70 16 30 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.05 0.75 7.87 -2.39 -0.02 0.73 16 32 H 0.08 1.58 7.87 -2.38 -0.02 1.56 16 33 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.79 8.11 -2.39 -0.02 1.77 16 35 H 0.41 5.92 7.38 -92.70 -0.68 5.23 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 2.17 6.23 -2.39 -0.01 2.16 16 38 H 0.35 9.95 6.98 -89.70 -0.63 9.33 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 41 H 0.39 15.86 5.76 -92.71 -0.53 15.33 16 42 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.78 6.25 -2.39 -0.01 1.77 16 45 H 0.05 0.78 7.75 -2.39 -0.02 0.76 16 46 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 47 H 0.06 0.65 7.02 -2.39 -0.02 0.63 16 48 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 1.38 6.98 -2.39 -0.02 1.37 16 50 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -81.45 396.78 -0.95 -82.41 By element: Atomic # 1 Polarization: 48.37 SS G_CDS: -0.93 Total: 47.44 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 6.74 Total: 22.45 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.93 Total: -123.48 kcal Atomic # 8 Polarization: -67.79 SS G_CDS: -2.73 Total: -70.52 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.70 kcal Total: -81.45 -0.95 -82.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733827910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.779 kcal (2) G-P(sol) polarization free energy of solvation -81.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds