Wall clock time and date at job start Wed Apr 1 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47207 * 2 1 4 4 N 1.46899 * 109.47090 * 119.99875 * 2 1 3 5 5 C 1.46893 * 111.00095 * 275.00093 * 4 2 1 6 6 C 1.50700 * 109.47389 * 180.02562 * 5 4 2 7 7 O 1.21299 * 119.99734 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00484 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00137 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00311 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99621 * 180.02562 * 9 8 6 12 12 N 1.31410 * 120.00442 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99798 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46793 * 89.99591 * 13 11 9 15 15 H 1.48492 * 109.47057 * 209.99752 * 13 11 9 16 16 H 1.48495 * 109.47138 * 329.99791 * 13 11 9 17 17 C 1.52998 * 109.47085 * 239.99854 * 2 1 3 18 18 H 1.09002 * 109.47283 * 175.00065 * 17 2 1 19 19 C 1.52998 * 109.47292 * 294.99996 * 17 2 1 20 20 N 1.46496 * 109.47246 * 55.00314 * 17 2 1 21 21 C 1.34777 * 120.00258 * 155.00083 * 20 17 2 22 22 O 1.21279 * 120.00166 * 359.97438 * 21 20 17 23 23 C 1.50706 * 119.99762 * 179.97438 * 21 20 17 24 24 C 1.53002 * 109.46925 * 179.97438 * 23 21 20 25 25 O 1.42977 * 109.46779 * 294.99967 * 24 23 21 26 26 C 1.43093 * 113.76633 * 181.20601 * 25 24 23 27 27 C 1.53262 * 108.94199 * 57.97001 * 26 25 24 28 28 C 1.53258 * 108.84634 * 305.47298 * 27 26 25 29 29 O 1.42963 * 109.47315 * 175.00154 * 24 23 21 30 30 H 1.09001 * 109.47298 * 300.00018 * 1 2 3 31 31 H 1.09000 * 109.47061 * 60.00286 * 1 2 3 32 32 H 1.09007 * 109.47030 * 180.02562 * 1 2 3 33 33 H 1.00900 * 110.99859 * 151.04343 * 4 2 1 34 34 H 1.09000 * 109.47358 * 299.99832 * 5 4 2 35 35 H 1.09002 * 109.47349 * 60.00125 * 5 4 2 36 36 H 0.96997 * 119.99790 * 359.97438 * 8 6 5 37 37 H 0.96992 * 120.00497 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47093 * 180.02562 * 19 17 2 39 39 H 1.09002 * 109.47121 * 299.99938 * 19 17 2 40 40 H 1.08994 * 109.47090 * 60.00118 * 19 17 2 41 41 H 0.96999 * 119.99694 * 334.99473 * 20 17 2 42 42 H 1.09000 * 109.47318 * 299.99141 * 23 21 20 43 43 H 1.09000 * 109.47161 * 59.99772 * 23 21 20 44 44 H 1.08998 * 109.47000 * 54.99344 * 24 23 21 45 45 H 1.09004 * 109.56070 * 298.13156 * 26 25 24 46 46 H 1.08999 * 109.64368 * 177.86077 * 26 25 24 47 47 H 1.09001 * 109.57047 * 185.66894 * 27 26 25 48 48 H 1.08996 * 109.68349 * 65.34570 * 27 26 25 49 49 H 1.09005 * 109.55812 * 294.69004 * 28 27 26 50 50 H 1.09002 * 109.65041 * 174.41733 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5885 -0.5215 3.5557 7 8 2.8688 -1.6985 3.4699 8 7 2.7286 0.1206 4.7324 9 6 3.1885 -0.5565 5.8323 10 1 3.4381 -1.6045 5.7559 11 6 3.3324 0.1054 7.0455 12 7 3.0283 1.3804 7.1386 13 14 3.9597 -0.8169 8.5440 14 1 5.4407 -0.7217 8.5996 15 1 3.3786 -0.2186 9.7725 16 1 3.5586 -2.2437 8.4508 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6444 -1.2951 19 6 1.6352 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.0913 -0.1939 -3.6275 22 8 3.1468 -0.7859 -3.7062 23 6 1.4901 0.4410 -4.8550 24 6 2.4044 0.1941 -6.0567 25 8 3.6496 0.8669 -5.8541 26 6 4.5685 0.7189 -6.9410 27 6 3.9135 1.2476 -8.2218 28 6 2.5719 0.5344 -8.4224 29 8 1.7798 0.6941 -7.2414 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.9173 -1.1205 1.0287 34 1 2.7588 1.0462 2.1182 35 1 1.0870 0.6163 2.5525 36 1 2.5041 1.0617 4.8011 37 1 3.1291 1.8425 7.9854 38 1 1.9990 -2.7094 -2.0777 39 1 2.0699 -2.6550 -0.3002 40 1 0.5490 -2.2724 -1.1420 41 1 0.6118 0.3701 -2.3794 42 1 0.5104 0.0036 -5.0476 43 1 1.3837 1.5138 -4.6941 44 1 2.5828 -0.8758 -6.1637 45 1 4.8182 -0.3346 -7.0669 46 1 5.4756 1.2867 -6.7338 47 1 4.5639 1.0484 -9.0735 48 1 3.7468 2.3210 -8.1327 49 1 2.7459 -0.5261 -8.6043 50 1 2.0491 0.9698 -9.2740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733966379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:19 Heat of formation + Delta-G solvation = -167.774668 kcal Electronic energy + Delta-G solvation = -30014.274610 eV Core-core repulsion = 25655.466612 eV Total energy + Delta-G solvation = -4358.807998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63061 -39.78390 -38.43052 -37.30739 -36.02439 -34.44394 -33.77483 -33.62114 -31.53091 -31.14901 -30.05885 -29.03367 -26.56204 -26.38923 -24.91011 -24.24585 -23.13446 -21.59435 -20.65370 -19.77550 -19.30008 -18.15079 -17.89372 -17.22200 -17.00892 -16.46061 -16.17732 -15.81213 -15.57774 -15.33856 -15.16141 -15.06762 -14.75575 -14.41619 -14.02813 -13.80542 -13.70434 -13.68006 -13.39137 -13.08600 -12.89860 -12.64988 -12.25874 -12.18861 -12.02538 -11.95754 -11.79208 -11.58902 -11.52479 -11.52444 -11.41431 -11.08369 -10.89500 -10.67561 -10.42655 -10.38420 -10.20893 -10.08851 -9.98759 -9.49886 -9.23003 -8.45441 -8.10322 -7.95131 -6.40745 -3.81543 2.46048 2.63257 3.18881 3.26665 3.27483 3.33453 3.40628 3.91904 4.11504 4.26369 4.28113 4.33432 4.35511 4.49748 4.59748 4.65901 4.80779 4.86223 4.88952 4.94831 5.05965 5.15910 5.17449 5.25171 5.26420 5.28418 5.38117 5.44339 5.58080 5.58680 5.60970 5.76431 5.81053 5.95403 5.95873 5.98151 6.18312 6.28759 6.39501 6.41770 6.45154 6.77856 7.16939 7.30646 7.56281 7.61604 8.04154 8.07320 8.62190 9.18918 9.55287 10.06690 10.76984 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.001610 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.781192 B =17385.000120 C =17688.588857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.142 3.858 18 H 0.087 0.913 19 C -0.157 4.157 20 N -0.723 5.723 21 C 0.520 3.480 22 O -0.528 6.528 23 C -0.129 4.129 24 C 0.264 3.736 25 O -0.378 6.378 26 C 0.058 3.942 27 C -0.194 4.194 28 C 0.059 3.941 29 O -0.396 6.396 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.400 0.600 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 2.813 -30.327 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.065 0.935 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.038 3.962 18 H 0.105 0.895 19 C -0.215 4.215 20 N -0.377 5.377 21 C 0.305 3.695 22 O -0.403 6.403 23 C -0.169 4.169 24 C 0.169 3.831 25 O -0.298 6.298 26 C -0.018 4.018 27 C -0.232 4.232 28 C -0.017 4.017 29 O -0.317 6.317 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.236 0.764 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.615 1.646 -29.912 30.310 hybrid contribution 0.716 0.911 0.378 1.219 sum -3.899 2.557 -29.534 29.900 Atomic orbital electron populations 1.21884 0.94465 1.02908 1.00914 1.21720 0.96530 0.95945 0.89277 0.93464 1.60194 1.34945 1.31698 1.02208 1.21732 1.01328 0.93898 0.91245 1.19789 0.84946 0.88200 0.84413 1.90528 1.55279 1.16103 1.84735 1.41858 1.57781 1.12440 1.07970 1.19711 1.39919 0.96471 0.86784 0.87901 1.25259 0.97656 0.95788 0.99231 1.69608 1.48667 1.08875 1.27186 0.85854 0.78763 0.79515 0.80141 1.20442 1.20942 1.19406 1.21070 0.98728 0.93369 0.83062 0.89520 1.22120 1.02034 0.94662 1.02687 1.46111 1.26040 1.57403 1.08152 1.20144 0.84875 0.80122 0.84322 1.90745 1.21929 1.42239 1.85430 1.21468 0.99690 1.04528 0.91235 1.22847 0.81746 0.94002 0.84530 1.88180 1.25485 1.74682 1.41424 1.22617 0.92655 1.00765 0.85806 1.22815 0.98244 1.02477 0.99656 1.22642 0.91638 0.99680 0.87749 1.88047 1.43995 1.83461 1.16224 0.92063 0.93207 0.91166 0.82825 0.93816 0.89530 0.77478 0.91894 0.92922 0.90016 0.92152 0.76418 0.86581 0.87154 0.91726 0.92702 0.88255 0.89665 0.89961 0.92714 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.93 37.16 0.33 -1.11 16 2 C 0.08 0.89 2.66 -67.71 -0.18 0.71 16 3 H 0.05 0.55 7.80 -51.93 -0.40 0.14 16 4 N -0.66 -10.18 5.14 -108.00 -0.55 -10.74 16 5 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 6 C 0.44 10.36 7.82 -10.99 -0.09 10.28 16 7 O -0.58 -15.76 15.78 5.54 0.09 -15.67 16 8 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 9 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 10 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 13 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.14 1.62 2.30 -67.93 -0.16 1.47 16 18 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 19 C -0.16 -1.85 9.02 37.16 0.33 -1.52 16 20 N -0.72 -6.66 4.99 -53.81 -0.27 -6.92 16 21 C 0.52 5.61 7.67 -10.98 -0.08 5.52 16 22 O -0.53 -7.84 15.08 -8.83 -0.13 -7.97 16 23 C -0.13 -1.03 5.78 -27.88 -0.16 -1.19 16 24 C 0.26 2.56 2.80 37.16 0.10 2.67 16 25 O -0.38 -4.28 9.77 -64.75 -0.63 -4.91 16 26 C 0.06 0.47 6.96 37.29 0.26 0.73 16 27 C -0.19 -1.15 6.35 -26.46 -0.17 -1.32 16 28 C 0.06 0.37 6.96 37.29 0.26 0.63 16 29 O -0.40 -3.57 10.54 -59.03 -0.62 -4.19 16 30 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 31 H 0.05 0.35 6.29 -51.93 -0.33 0.03 16 32 H 0.07 0.76 6.57 -51.93 -0.34 0.41 16 33 H 0.35 5.79 7.61 -39.29 -0.30 5.49 16 34 H 0.04 0.69 8.06 -51.93 -0.42 0.28 16 35 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 36 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.09 7.17 -51.93 -0.37 0.72 16 40 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 41 H 0.40 2.61 6.58 -40.82 -0.27 2.34 16 42 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -34.59 402.61 -8.22 -42.81 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -7.99 Total: 13.93 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 0.18 Total: 9.69 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.16 Total: -55.87 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.30 Total: -32.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.59 -8.22 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.969 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds