Wall clock time and date at job start Wed Apr 1 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47207 * 2 1 4 4 N 1.46899 * 109.47090 * 119.99875 * 2 1 3 5 5 C 1.46893 * 111.00095 * 275.00093 * 4 2 1 6 6 C 1.50700 * 109.47389 * 180.02562 * 5 4 2 7 7 O 1.21299 * 119.99734 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00484 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00137 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00311 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99621 * 180.02562 * 9 8 6 12 12 N 1.31410 * 120.00442 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99798 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46793 * 89.99591 * 13 11 9 15 15 H 1.48492 * 109.47057 * 209.99752 * 13 11 9 16 16 H 1.48495 * 109.47138 * 329.99791 * 13 11 9 17 17 C 1.52998 * 109.47085 * 239.99854 * 2 1 3 18 18 H 1.09002 * 109.47283 * 175.00065 * 17 2 1 19 19 C 1.52998 * 109.47292 * 294.99996 * 17 2 1 20 20 N 1.46496 * 109.47246 * 55.00314 * 17 2 1 21 21 C 1.34777 * 120.00258 * 155.00083 * 20 17 2 22 22 O 1.21279 * 120.00166 * 359.97438 * 21 20 17 23 23 C 1.50706 * 119.99762 * 179.97438 * 21 20 17 24 24 C 1.53002 * 109.46925 * 179.97438 * 23 21 20 25 25 O 1.42977 * 109.46779 * 294.99967 * 24 23 21 26 26 C 1.43093 * 113.76633 * 181.20601 * 25 24 23 27 27 C 1.53262 * 108.94199 * 57.97001 * 26 25 24 28 28 C 1.53258 * 108.84634 * 305.47298 * 27 26 25 29 29 O 1.42963 * 109.47315 * 175.00154 * 24 23 21 30 30 H 1.09001 * 109.47298 * 300.00018 * 1 2 3 31 31 H 1.09000 * 109.47061 * 60.00286 * 1 2 3 32 32 H 1.09007 * 109.47030 * 180.02562 * 1 2 3 33 33 H 1.00900 * 110.99859 * 151.04343 * 4 2 1 34 34 H 1.09000 * 109.47358 * 299.99832 * 5 4 2 35 35 H 1.09002 * 109.47349 * 60.00125 * 5 4 2 36 36 H 0.96997 * 119.99790 * 359.97438 * 8 6 5 37 37 H 0.96992 * 120.00497 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47093 * 180.02562 * 19 17 2 39 39 H 1.09002 * 109.47121 * 299.99938 * 19 17 2 40 40 H 1.08994 * 109.47090 * 60.00118 * 19 17 2 41 41 H 0.96999 * 119.99694 * 334.99473 * 20 17 2 42 42 H 1.09000 * 109.47318 * 299.99141 * 23 21 20 43 43 H 1.09000 * 109.47161 * 59.99772 * 23 21 20 44 44 H 1.08998 * 109.47000 * 54.99344 * 24 23 21 45 45 H 1.09004 * 109.56070 * 298.13156 * 26 25 24 46 46 H 1.08999 * 109.64368 * 177.86077 * 26 25 24 47 47 H 1.09001 * 109.57047 * 185.66894 * 27 26 25 48 48 H 1.08996 * 109.68349 * 65.34570 * 27 26 25 49 49 H 1.09005 * 109.55812 * 294.69004 * 28 27 26 50 50 H 1.09002 * 109.65041 * 174.41733 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5885 -0.5215 3.5557 7 8 2.8688 -1.6985 3.4699 8 7 2.7286 0.1206 4.7324 9 6 3.1885 -0.5565 5.8323 10 1 3.4381 -1.6045 5.7559 11 6 3.3324 0.1054 7.0455 12 7 3.0283 1.3804 7.1386 13 14 3.9597 -0.8169 8.5440 14 1 5.4407 -0.7217 8.5996 15 1 3.3786 -0.2186 9.7725 16 1 3.5586 -2.2437 8.4508 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6444 -1.2951 19 6 1.6352 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.0913 -0.1939 -3.6275 22 8 3.1468 -0.7859 -3.7062 23 6 1.4901 0.4410 -4.8550 24 6 2.4044 0.1941 -6.0567 25 8 3.6496 0.8669 -5.8541 26 6 4.5685 0.7189 -6.9410 27 6 3.9135 1.2476 -8.2218 28 6 2.5719 0.5344 -8.4224 29 8 1.7798 0.6941 -7.2414 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.9173 -1.1205 1.0287 34 1 2.7588 1.0462 2.1182 35 1 1.0870 0.6163 2.5525 36 1 2.5041 1.0617 4.8011 37 1 3.1291 1.8425 7.9854 38 1 1.9990 -2.7094 -2.0777 39 1 2.0699 -2.6550 -0.3002 40 1 0.5490 -2.2724 -1.1420 41 1 0.6118 0.3701 -2.3794 42 1 0.5104 0.0036 -5.0476 43 1 1.3837 1.5138 -4.6941 44 1 2.5828 -0.8758 -6.1637 45 1 4.8182 -0.3346 -7.0669 46 1 5.4756 1.2867 -6.7338 47 1 4.5639 1.0484 -9.0735 48 1 3.7468 2.3210 -8.1327 49 1 2.7459 -0.5261 -8.6043 50 1 2.0491 0.9698 -9.2740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733966379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:18 Heat of formation + Delta-G solvation = -194.899117 kcal Electronic energy + Delta-G solvation = -30015.450815 eV Core-core repulsion = 25655.466612 eV Total energy + Delta-G solvation = -4359.984203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38854 -40.60639 -40.11169 -38.50597 -36.69306 -36.04976 -35.29936 -34.23413 -33.27668 -32.38462 -30.88929 -29.93498 -28.12727 -26.94569 -26.16688 -25.49895 -24.12713 -22.16415 -21.50253 -21.11972 -20.72836 -19.92496 -18.88324 -18.08334 -17.85400 -17.48523 -17.13613 -16.98006 -16.69652 -16.49351 -16.14075 -16.03538 -15.73447 -15.67809 -15.53971 -15.25522 -14.77673 -14.36337 -14.30912 -14.24643 -13.96196 -13.68330 -13.52251 -13.41445 -13.09918 -13.05323 -13.00235 -12.83514 -12.50257 -12.43668 -12.40843 -12.12636 -12.11878 -12.09415 -11.90617 -11.65097 -11.50218 -11.03830 -10.93202 -10.69064 -10.34812 -10.11060 -10.00985 -9.37020 -8.46340 -5.94985 1.38239 1.42064 1.54788 1.63425 1.87367 2.06001 2.29766 2.64209 2.70681 3.01498 3.20974 3.49764 3.63546 3.69441 3.77352 3.77767 3.85330 3.95955 4.11764 4.21151 4.23960 4.31810 4.39351 4.42567 4.46901 4.48083 4.52956 4.59834 4.67713 4.70289 4.81977 4.83545 4.85012 4.86945 5.01506 5.06111 5.09629 5.30446 5.41423 5.49810 5.53186 5.82390 5.89093 6.09851 6.13715 6.33658 6.54458 6.60656 7.13138 7.25881 7.56802 8.12281 8.71000 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.001610 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.781192 B =17385.000120 C =17688.588857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.057 0.943 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.274 1.274 17 C 0.150 3.850 18 H 0.062 0.938 19 C -0.149 4.149 20 N -0.708 5.708 21 C 0.518 3.482 22 O -0.574 6.574 23 C -0.121 4.121 24 C 0.261 3.739 25 O -0.406 6.406 26 C 0.047 3.953 27 C -0.186 4.186 28 C 0.049 3.951 29 O -0.405 6.405 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.342 0.658 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.416 0.584 42 H 0.147 0.853 43 H 0.125 0.875 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 4.135 -31.527 32.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 H 0.075 0.925 4 N -0.301 5.301 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.045 3.955 18 H 0.080 0.920 19 C -0.207 4.207 20 N -0.363 5.363 21 C 0.305 3.695 22 O -0.453 6.453 23 C -0.161 4.161 24 C 0.165 3.835 25 O -0.327 6.327 26 C -0.030 4.030 27 C -0.223 4.223 28 C -0.027 4.027 29 O -0.326 6.326 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.256 0.744 42 H 0.165 0.835 43 H 0.143 0.857 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.122 0.878 47 H 0.128 0.872 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.058 3.017 -31.132 31.859 hybrid contribution 1.166 0.484 0.659 1.424 sum -4.893 3.502 -30.473 31.061 Atomic orbital electron populations 1.21900 0.92613 1.02969 1.02490 1.21773 0.97744 0.95828 0.87534 0.92506 1.60233 1.34551 1.32092 1.03270 1.21584 1.02435 0.93583 0.89024 1.20878 0.83199 0.87989 0.85420 1.90499 1.56606 1.18216 1.85586 1.41922 1.58311 1.12591 1.08213 1.19671 1.42185 0.95982 0.88607 0.90367 1.26024 0.97216 0.96630 1.01329 1.69664 1.48553 1.09669 1.28157 0.84932 0.78427 0.78025 0.76972 1.19728 1.19469 1.19839 1.20802 0.97502 0.93286 0.83919 0.91958 1.22022 1.02656 0.94778 1.01265 1.45915 1.26407 1.56884 1.07047 1.20669 0.84225 0.79331 0.85237 1.90732 1.24090 1.44368 1.86119 1.21494 1.00293 1.05261 0.89041 1.22874 0.81716 0.93346 0.85531 1.88139 1.26492 1.75043 1.43053 1.22827 0.92754 1.01038 0.86333 1.22763 0.98394 1.01922 0.99262 1.22921 0.91856 1.00493 0.87402 1.88019 1.44519 1.83439 1.16653 0.92460 0.89711 0.91866 0.83854 0.91807 0.87395 0.76959 0.91304 0.93779 0.92006 0.90762 0.74427 0.83535 0.85683 0.92957 0.92826 0.87799 0.87250 0.90404 0.92010 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.93 71.98 0.64 -1.80 16 2 C 0.08 1.76 2.66 44.91 0.12 1.88 16 3 H 0.06 1.17 7.80 -2.39 -0.02 1.15 16 4 N -0.67 -20.38 5.14 -495.60 -2.55 -22.92 16 5 C 0.07 2.22 5.96 85.56 0.51 2.73 16 6 C 0.44 20.83 7.82 87.66 0.69 21.52 16 7 O -0.62 -34.70 15.78 -3.09 -0.05 -34.75 16 8 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 9 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 12 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 13 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 C 0.15 3.32 2.30 44.99 0.10 3.43 16 18 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 19 C -0.15 -3.50 9.02 71.98 0.65 -2.85 16 20 N -0.71 -11.70 4.99 -442.54 -2.21 -13.91 16 21 C 0.52 10.66 7.67 87.66 0.67 11.34 16 22 O -0.57 -17.37 15.08 10.74 0.16 -17.21 16 23 C -0.12 -1.71 5.78 29.85 0.17 -1.53 16 24 C 0.26 4.86 2.80 71.98 0.20 5.07 16 25 O -0.41 -9.19 9.77 -120.76 -1.18 -10.37 16 26 C 0.05 0.74 6.96 72.07 0.50 1.24 16 27 C -0.19 -1.94 6.35 30.77 0.20 -1.74 16 28 C 0.05 0.53 6.96 72.07 0.50 1.04 16 29 O -0.41 -6.68 10.54 -126.22 -1.33 -8.01 16 30 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 31 H 0.08 0.85 6.29 -2.39 -0.02 0.84 16 32 H 0.06 1.20 6.57 -2.38 -0.02 1.19 16 33 H 0.34 11.52 7.61 -89.69 -0.68 10.83 16 34 H 0.06 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.11 3.20 7.44 -2.39 -0.02 3.19 16 36 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.70 7.17 -2.39 -0.02 1.69 16 40 H 0.07 1.51 6.57 -2.39 -0.02 1.50 16 41 H 0.42 4.03 6.58 -92.71 -0.61 3.42 16 42 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.07 7.95 -2.39 -0.02 1.05 16 45 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.17 402.61 -1.27 -78.44 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -1.04 Total: 42.22 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.24 Total: 21.77 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -6.09 Total: -117.36 kcal Atomic # 8 Polarization: -67.93 SS G_CDS: -2.40 Total: -70.33 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -77.17 -1.27 -78.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.457 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds