Wall clock time and date at job start Wed Apr 1 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 O 1.42977 * 109.46779 * 294.99967 * 8 7 5 10 10 C 1.43093 * 113.76633 * 181.20601 * 9 8 7 11 11 C 1.53262 * 108.94199 * 57.97001 * 10 9 8 12 12 C 1.53258 * 108.84634 * 305.47298 * 11 10 9 13 13 O 1.42963 * 109.47315 * 175.00154 * 8 7 5 14 14 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 15 15 H 1.09000 * 109.46632 * 300.00286 * 14 2 1 16 16 C 1.52998 * 109.47292 * 179.97438 * 14 2 1 17 17 N 1.46906 * 109.47128 * 59.99847 * 14 2 1 18 18 C 1.46898 * 110.99888 * 205.00157 * 17 14 2 19 19 C 1.50705 * 109.46661 * 179.97438 * 18 17 14 20 20 O 1.21288 * 120.00125 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99549 * 180.02562 * 19 18 17 22 22 C 1.37103 * 120.00062 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99229 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00207 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00271 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00123 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46979 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46966 * 119.99551 * 26 24 22 29 29 H 1.48497 * 109.47480 * 239.99908 * 26 24 22 30 30 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 31 31 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 33 33 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 34 34 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 35 35 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 36 36 H 1.08998 * 109.47000 * 54.99344 * 8 7 5 37 37 H 1.09004 * 109.56070 * 298.13156 * 10 9 8 38 38 H 1.08999 * 109.64368 * 177.86077 * 10 9 8 39 39 H 1.09001 * 109.57047 * 185.66894 * 11 10 9 40 40 H 1.08996 * 109.68349 * 65.34570 * 11 10 9 41 41 H 1.09005 * 109.55812 * 294.69004 * 12 11 10 42 42 H 1.09002 * 109.65041 * 174.41733 * 12 11 10 43 43 H 1.09002 * 109.46901 * 300.00166 * 16 14 2 44 44 H 1.09002 * 109.47121 * 60.00062 * 16 14 2 45 45 H 1.09001 * 109.47093 * 179.97438 * 16 14 2 46 46 H 1.00901 * 111.00013 * 328.95633 * 17 14 2 47 47 H 1.08997 * 109.47334 * 299.99788 * 18 17 14 48 48 H 1.08995 * 109.47296 * 60.00089 * 18 17 14 49 49 H 0.97003 * 120.00664 * 359.97438 * 21 19 18 50 50 H 0.97005 * 120.00698 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7010 0.2547 4.7588 9 8 3.6705 1.2694 4.4861 10 6 3.8145 2.2274 5.5393 11 6 4.2019 1.4949 6.8286 12 6 3.1679 0.3978 7.1044 13 8 3.0649 -0.4439 5.9519 14 6 2.0400 -0.7213 -1.2492 15 1 1.6766 -1.7489 -1.2491 16 6 3.5700 -0.7207 -1.2495 17 7 1.5503 -0.0288 -2.4487 18 6 1.4876 -0.9440 -3.5961 19 6 0.9815 -0.1998 -4.8049 20 8 0.7012 0.9771 -4.7192 21 7 0.8404 -0.8422 -5.9813 22 6 0.3805 -0.1652 -7.0812 23 1 0.1309 0.8828 -7.0048 24 6 0.2345 -0.8276 -8.2939 25 7 0.5377 -2.1028 -8.3867 26 14 -0.3928 0.0947 -9.7924 27 1 -0.6601 1.5090 -9.4270 28 1 0.6305 0.0466 -10.8674 29 1 -1.6469 -0.5381 -10.2740 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6316 1.1527 34 1 1.9759 -1.5504 3.8327 35 1 3.6480 -1.1212 3.3986 36 1 1.7215 0.7142 4.8912 37 1 2.8705 2.7519 5.6871 38 1 4.5933 2.9441 5.2787 39 1 4.2161 2.2005 7.6592 40 1 5.1885 1.0461 6.7136 41 1 2.1993 0.8530 7.3115 42 1 3.4832 -0.1956 7.9627 43 1 3.9329 0.3071 -1.2497 44 1 3.9337 -1.2343 -0.3595 45 1 3.9333 -1.2350 -2.1393 46 1 0.6527 0.3992 -2.2780 47 1 2.4829 -1.3377 -3.8017 48 1 0.8112 -1.7675 -3.3674 49 1 1.0649 -1.7834 -6.0500 50 1 0.4354 -2.5654 -9.2332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733966382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:28 Heat of formation + Delta-G solvation = -196.918086 kcal Electronic energy + Delta-G solvation = -30015.254410 eV Core-core repulsion = 25655.182658 eV Total energy + Delta-G solvation = -4360.071752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37052 -40.59041 -40.11251 -38.45730 -36.68513 -36.03932 -35.29531 -34.22520 -33.27540 -32.27623 -31.00345 -30.46279 -28.01738 -26.93919 -25.91167 -25.36821 -23.85910 -22.14515 -21.54067 -21.28393 -21.08281 -19.92189 -18.84132 -18.08788 -17.87285 -17.50711 -17.18187 -17.07194 -16.65672 -16.41316 -16.09534 -15.94051 -15.72726 -15.66844 -15.41690 -15.07269 -14.78698 -14.49460 -14.30302 -14.17887 -14.11713 -13.85623 -13.52534 -13.48859 -13.14955 -13.07089 -12.89912 -12.65666 -12.55582 -12.43122 -12.39939 -12.30203 -12.11829 -12.11391 -12.08645 -11.60136 -11.50852 -11.03130 -10.92418 -10.68375 -10.33652 -10.12082 -10.00700 -9.33967 -8.46419 -5.94895 1.36835 1.42356 1.56324 1.65083 1.87364 2.05975 2.29954 2.65226 2.70774 3.03254 3.21077 3.51652 3.58795 3.69514 3.77902 3.78337 3.85939 3.97543 4.12375 4.19161 4.24527 4.32043 4.40269 4.43026 4.44959 4.47425 4.52301 4.60362 4.61104 4.71110 4.74826 4.82569 4.84684 4.87916 4.98144 5.02778 5.10190 5.20755 5.40642 5.42059 5.46026 5.83080 5.90996 6.11951 6.14571 6.38795 6.56283 6.61016 7.13535 7.28139 7.57041 8.12781 8.71079 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.039291 B = 0.001559 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.456284 B =17953.077202 C =18103.378320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.066 0.934 4 N -0.705 5.705 5 C 0.520 3.480 6 O -0.574 6.574 7 C -0.121 4.121 8 C 0.261 3.739 9 O -0.406 6.406 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.049 3.951 13 O -0.405 6.405 14 C 0.084 3.916 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.681 5.681 18 C 0.068 3.932 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.346 0.654 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -4.210 31.647 32.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.084 0.916 4 N -0.359 5.359 5 C 0.307 3.693 6 O -0.453 6.453 7 C -0.160 4.160 8 C 0.165 3.835 9 O -0.327 6.327 10 C -0.029 4.029 11 C -0.223 4.223 12 C -0.027 4.027 13 O -0.326 6.326 14 C -0.026 4.026 15 H 0.092 0.908 16 C -0.195 4.195 17 N -0.317 5.317 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.256 0.744 34 H 0.164 0.836 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.167 0.833 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.608 -2.672 31.237 32.040 hybrid contribution -1.037 -0.347 -0.670 1.282 sum 5.571 -3.019 30.567 31.217 Atomic orbital electron populations 1.22188 0.95034 1.03038 1.01999 1.20774 0.93916 0.96906 0.83945 0.91569 1.45729 1.67119 1.14676 1.08353 1.20633 0.76776 0.86762 0.85135 1.90738 1.51172 1.17805 1.85543 1.21488 1.06601 0.98480 0.89452 1.22878 0.90319 0.85143 0.85151 1.88143 1.61525 1.39927 1.43070 1.22825 1.01939 0.91040 0.87144 1.22762 1.00660 0.99811 0.99095 1.22918 0.98689 0.93033 0.88027 1.88019 1.90390 1.36411 1.17821 1.21773 0.96749 0.96653 0.87435 0.90801 1.21809 0.93614 1.01769 1.02344 1.60160 1.35280 1.32676 1.03574 1.21577 1.02482 0.93631 0.88786 1.20922 0.83190 0.87975 0.85516 1.90501 1.56676 1.18345 1.85624 1.41918 1.58261 1.12594 1.08169 1.19699 1.42102 0.95930 0.88676 0.90476 1.26001 0.97227 0.96614 1.01263 1.69667 1.48608 1.09595 1.28102 0.84889 0.78201 0.78000 0.77343 1.19986 1.19631 1.19502 0.92174 0.90518 0.92694 0.74438 0.83574 0.85640 0.93010 0.92857 0.87798 0.87271 0.90392 0.92038 0.86134 0.94016 0.90069 0.92407 0.83253 0.87673 0.90984 0.76880 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.25 71.98 0.67 -2.89 16 2 C 0.15 3.30 2.29 44.99 0.10 3.40 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 4 N -0.71 -11.23 4.38 -442.54 -1.94 -13.17 16 5 C 0.52 10.50 7.67 87.66 0.67 11.17 16 6 O -0.57 -17.31 15.08 10.74 0.16 -17.15 16 7 C -0.12 -1.65 5.78 29.85 0.17 -1.48 16 8 C 0.26 4.82 2.80 71.98 0.20 5.02 16 9 O -0.41 -9.14 9.77 -120.76 -1.18 -10.32 16 10 C 0.05 0.74 6.96 72.07 0.50 1.24 16 11 C -0.19 -1.92 6.35 30.77 0.20 -1.73 16 12 C 0.05 0.53 6.96 72.07 0.50 1.03 16 13 O -0.41 -6.63 10.54 -126.22 -1.33 -7.96 16 14 C 0.08 1.82 2.28 44.91 0.10 1.92 16 15 H 0.07 1.27 7.80 -2.39 -0.02 1.25 16 16 C -0.14 -2.86 9.26 71.98 0.67 -2.20 16 17 N -0.68 -21.24 5.93 -495.58 -2.94 -24.18 16 18 C 0.07 2.24 5.97 85.56 0.51 2.75 16 19 C 0.44 20.76 7.82 87.66 0.69 21.44 16 20 O -0.62 -35.14 15.78 -3.05 -0.05 -35.18 16 21 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 22 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 26 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 30 H 0.06 1.48 6.21 -2.39 -0.01 1.46 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.42 3.60 8.39 -92.71 -0.78 2.83 16 34 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 37 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 42 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.21 7.45 -2.39 -0.02 1.19 16 45 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 46 H 0.35 11.51 5.86 -89.69 -0.53 10.98 16 47 H 0.11 3.14 7.44 -2.39 -0.02 3.12 16 48 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 49 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 50 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -78.33 406.38 -1.39 -79.73 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: -1.06 Total: 41.72 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.26 Total: 21.26 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -6.22 Total: -117.22 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -2.40 Total: -70.62 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -78.33 -1.39 -79.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.191 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds