Wall clock time and date at job start Wed Apr 1 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00021 * 2 1 4 4 C 1.50703 * 109.46884 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00073 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99851 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00206 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47305 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.46950 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00073 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99851 * 179.97438 * 9 8 7 12 12 C 1.47147 * 120.98362 * 0.02562 * 11 9 8 13 13 C 1.53299 * 108.38403 * 129.48589 * 12 11 9 14 14 O 1.42956 * 109.22214 * 52.30626 * 13 12 11 15 15 C 1.42965 * 114.16423 * 297.41711 * 14 13 12 16 16 H 1.08998 * 109.51572 * 302.65675 * 15 14 13 17 17 C 1.53003 * 109.51090 * 182.50671 * 15 14 13 18 18 H 1.09001 * 109.47099 * 185.00189 * 17 15 14 19 19 C 1.53001 * 109.47114 * 305.00249 * 17 15 14 20 20 N 1.46499 * 109.47132 * 65.00010 * 17 15 14 21 21 C 1.36939 * 119.99769 * 154.99654 * 20 17 15 22 22 H 1.07996 * 120.00260 * 0.02562 * 21 20 17 23 23 C 1.38809 * 119.99725 * 179.97438 * 21 20 17 24 24 N 1.31625 * 120.00237 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99909 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46798 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46813 * 120.00341 * 25 23 21 28 28 H 1.48496 * 109.47136 * 240.00577 * 25 23 21 29 29 C 1.47159 * 120.98147 * 180.02562 * 11 9 8 30 30 H 1.09005 * 109.46774 * 300.00388 * 1 2 3 31 31 H 1.09001 * 109.46780 * 59.99893 * 1 2 3 32 32 H 1.08996 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47329 * 60.00100 * 3 2 1 34 34 H 1.08999 * 109.47153 * 299.99816 * 3 2 1 35 35 H 0.97003 * 119.99766 * 0.02562 * 6 4 3 36 36 H 1.09005 * 109.46832 * 60.00070 * 7 6 4 37 37 H 1.08999 * 109.46944 * 300.00219 * 7 6 4 38 38 H 1.09000 * 109.46886 * 60.00585 * 8 7 6 39 39 H 1.08999 * 109.47244 * 299.99968 * 8 7 6 40 40 H 1.09006 * 109.68272 * 9.76385 * 12 11 9 41 41 H 1.09000 * 109.68727 * 249.21110 * 12 11 9 42 42 H 1.08996 * 109.51065 * 292.37638 * 13 12 11 43 43 H 1.09004 * 109.55368 * 172.25592 * 13 12 11 44 44 H 1.09003 * 109.46808 * 300.00183 * 19 17 15 45 45 H 1.09001 * 109.47186 * 59.99994 * 19 17 15 46 46 H 1.08996 * 109.47160 * 180.02562 * 19 17 15 47 47 H 0.96995 * 120.00224 * 335.00410 * 20 17 15 48 48 H 0.96996 * 119.99700 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.67950 * 110.79377 * 29 11 9 50 50 H 1.08992 * 109.68172 * 350.23680 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2766 2.2967 0.0002 7 6 5.7369 2.1811 0.0003 8 6 6.3593 3.5788 0.0004 9 6 7.8616 3.4597 0.0011 10 8 8.3831 2.3648 0.0010 11 7 8.6256 4.5700 0.0008 12 6 8.0157 5.9092 0.0004 13 6 8.6571 6.7329 1.1229 14 8 10.0795 6.6832 0.9894 15 6 10.6344 5.3724 1.1228 16 1 10.3519 4.9540 2.0889 17 6 12.1593 5.4505 1.0248 18 1 12.5762 4.4435 1.0375 19 6 12.5514 6.1486 -0.2789 20 7 12.6834 6.2104 2.1624 21 6 13.9673 6.0030 2.5910 22 1 14.5936 5.2796 2.0903 23 6 14.4641 6.7235 3.6685 24 7 13.7010 7.6055 4.2785 25 14 16.2159 6.4411 4.2529 26 1 16.8595 5.4055 3.4053 27 1 16.9818 7.7093 4.1517 28 1 16.1988 5.9844 5.6658 29 6 10.0943 4.4789 0.0009 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8594 3.1724 -0.0001 36 1 6.0586 1.6398 -0.8896 37 1 6.0585 1.6404 0.8904 38 1 6.0377 4.1196 0.8905 39 1 6.0377 4.1198 -0.8895 40 1 6.9429 5.8241 0.1744 41 1 8.1950 6.3940 -0.9593 42 1 8.3673 6.3196 2.0889 43 1 8.3209 7.7675 1.0540 44 1 12.1614 5.5832 -1.1253 45 1 12.1344 7.1556 -0.2916 46 1 13.6377 6.2039 -0.3490 47 1 12.1210 6.8604 2.6120 48 1 14.0481 8.1086 5.0317 49 1 10.4833 4.8196 -0.9587 50 1 10.3981 3.4468 0.1752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734177557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:36 Heat of formation + Delta-G solvation = -170.406237 kcal Electronic energy + Delta-G solvation = -30042.891426 eV Core-core repulsion = 25683.969315 eV Total energy + Delta-G solvation = -4358.922112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56431 -40.81713 -39.69546 -38.43277 -37.12303 -36.30011 -35.74912 -34.34854 -32.65324 -31.70399 -29.95579 -29.77053 -28.40012 -26.90196 -26.40090 -25.11019 -24.45343 -23.21861 -21.89946 -21.17830 -20.12784 -19.30176 -18.50916 -18.36483 -17.61816 -17.54597 -17.43325 -17.00956 -16.91514 -16.57988 -16.26651 -16.06371 -15.99807 -15.69530 -15.38879 -15.21886 -14.95261 -14.87697 -14.33255 -14.09523 -14.03658 -13.99514 -13.61369 -13.34742 -13.15076 -13.06205 -12.86844 -12.69734 -12.53574 -12.43952 -12.34456 -12.32810 -12.13806 -11.82152 -11.64280 -11.56440 -11.19030 -11.03001 -10.94017 -10.80856 -10.74802 -10.21637 -9.58703 -9.00688 -7.93043 -5.21363 1.47135 1.47682 1.50816 1.53662 1.57669 1.58603 2.02713 2.56270 2.82047 3.11976 3.41005 3.45731 3.58941 3.72438 3.80337 3.94965 4.00619 4.03044 4.04138 4.18330 4.22962 4.31268 4.36473 4.38909 4.41818 4.51669 4.54899 4.60015 4.62581 4.65533 4.79586 4.84693 4.88167 4.89547 4.90444 5.00154 5.09830 5.24374 5.29199 5.31512 5.51753 5.62253 6.06102 6.27486 6.28129 6.32061 6.54352 7.04326 7.22624 7.35495 8.11038 8.35970 9.30618 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.001691 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.805031 B =16553.007643 C =16798.552840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.047 3.953 4 C 0.503 3.497 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.140 3.860 8 C -0.134 4.134 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.613 5.613 12 C 0.075 3.925 13 C 0.033 3.967 14 O -0.384 6.384 15 C 0.093 3.907 16 H 0.038 0.962 17 C 0.173 3.827 18 H 0.054 0.946 19 C -0.147 4.147 20 N -0.732 5.732 21 C -0.239 4.239 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.295 1.295 29 C 0.091 3.909 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.426 0.574 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.130 0.870 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.035 0.965 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.092 0.908 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.970 -2.619 -13.196 33.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.290 3.710 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.015 3.985 8 C -0.174 4.174 9 C 0.301 3.699 10 O -0.468 6.468 11 N -0.347 5.347 12 C -0.047 4.047 13 C -0.044 4.044 14 O -0.303 6.303 15 C 0.034 3.966 16 H 0.056 0.944 17 C 0.065 3.935 18 H 0.072 0.928 19 C -0.207 4.207 20 N -0.372 5.372 21 C -0.371 4.371 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.222 1.222 29 C -0.033 4.033 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.148 0.852 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.950 -4.058 -13.236 32.995 hybrid contribution 0.854 0.391 0.984 1.360 sum -29.096 -3.667 -12.252 31.782 Atomic orbital electron populations 1.23026 0.78178 1.04032 1.01816 1.87976 1.22250 1.27220 1.95846 1.22418 0.88264 0.86695 1.05857 1.21128 0.90587 0.83975 0.75345 1.90754 1.76000 1.29167 1.50261 1.45571 1.05910 1.09529 1.75263 1.20784 0.79310 0.96725 1.01694 1.21810 0.88779 0.98103 1.08682 1.21176 0.90864 0.82996 0.74872 1.90747 1.76114 1.28151 1.51813 1.48286 1.06095 1.07399 1.72877 1.22786 1.00355 0.80745 1.00781 1.23278 0.80538 1.02976 0.97608 1.88057 1.21682 1.27538 1.93007 1.22488 0.93988 0.83806 0.96354 0.94431 1.20445 0.89546 0.94962 0.88587 0.92772 1.22199 1.00207 1.00979 0.97272 1.42516 1.12515 1.47080 1.35117 1.19687 0.90463 1.17017 1.09958 0.90649 1.25524 1.02085 0.99618 0.99517 1.69840 1.37386 1.29582 1.25117 0.85110 0.80139 0.77183 0.77564 1.19111 1.22024 1.22203 1.22179 0.80474 1.00877 0.99734 0.92071 0.91921 0.89229 0.86809 0.86579 0.73563 0.92980 0.93565 0.84530 0.83767 0.84320 0.88644 0.93433 0.85240 0.91162 0.93290 0.94603 0.79212 0.94131 0.88979 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.10 10.24 -129.94 -1.33 -8.43 16 3 C 0.05 0.43 6.42 71.24 0.46 0.89 16 4 C 0.50 9.01 7.91 87.66 0.69 9.70 16 5 O -0.58 -18.54 16.50 16.02 0.26 -18.27 16 6 N -0.71 -7.23 5.56 -463.07 -2.57 -9.81 16 7 C 0.14 2.35 4.96 86.38 0.43 2.78 16 8 C -0.13 -1.26 4.19 29.85 0.12 -1.13 16 9 C 0.51 11.01 7.71 87.66 0.68 11.69 16 10 O -0.59 -19.20 15.45 -3.02 -0.05 -19.25 16 11 N -0.61 -12.56 3.02 -817.42 -2.47 -15.03 16 12 C 0.07 0.89 6.54 86.36 0.56 1.46 16 13 C 0.03 0.63 6.98 72.08 0.50 1.13 16 14 O -0.38 -11.95 9.24 -148.98 -1.38 -13.33 16 15 C 0.09 3.10 2.61 30.68 0.08 3.18 16 16 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 17 C 0.17 6.97 2.77 44.99 0.12 7.09 16 18 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 19 C -0.15 -5.24 9.06 71.98 0.65 -4.59 16 20 N -0.73 -37.81 5.10 -322.94 -1.65 -39.46 16 21 C -0.24 -13.54 9.93 84.03 0.83 -12.71 16 22 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 24 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 25 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 29 C 0.09 2.47 5.82 86.34 0.50 2.98 16 30 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.43 -0.12 8.47 -92.71 -0.79 -0.90 16 36 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.14 0.43 7.66 -2.39 -0.02 0.41 16 39 H 0.14 0.22 8.02 -2.39 -0.02 0.20 16 40 H 0.14 0.31 6.05 -2.38 -0.01 0.30 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.07 1.99 6.41 -2.39 -0.02 1.97 16 45 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.38 21.07 7.58 -92.71 -0.70 20.36 16 48 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 49 H 0.09 2.29 6.26 -2.39 -0.01 2.27 16 50 H 0.08 2.55 7.08 -2.39 -0.02 2.53 16 Total: -1.00 -93.24 407.38 -0.04 -93.29 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.53 Total: 21.18 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 7.36 Total: 19.98 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.41 Total: -124.13 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -2.49 Total: -59.28 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -93.24 -0.04 -93.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734177557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.121 kcal (2) G-P(sol) polarization free energy of solvation -93.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds