Wall clock time and date at job start Wed Apr 1 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00314 * 2 1 4 4 C 1.50695 * 109.47222 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00159 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00075 * 180.02562 * 4 3 2 7 7 C 1.46492 * 120.00344 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47460 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46841 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00509 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99389 * 180.02562 * 9 8 7 12 12 C 1.47164 * 120.94464 * 359.97438 * 11 9 8 13 13 C 1.53300 * 108.37481 * 230.47489 * 12 11 9 14 14 O 1.42961 * 109.26618 * 307.77372 * 13 12 11 15 15 C 1.42967 * 114.16831 * 62.55217 * 14 13 12 16 16 H 1.09006 * 109.50903 * 57.39540 * 15 14 13 17 17 C 1.52992 * 109.51417 * 177.49773 * 15 14 13 18 18 H 1.09002 * 109.47110 * 175.00217 * 17 15 14 19 19 C 1.52995 * 109.47333 * 55.00084 * 17 15 14 20 20 N 1.46502 * 109.47236 * 294.99996 * 17 15 14 21 21 C 1.36933 * 120.00359 * 204.99994 * 20 17 15 22 22 H 1.08004 * 120.00076 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00055 * 180.02562 * 21 20 17 24 24 N 1.31615 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99904 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47264 * 59.99903 * 25 23 21 27 27 H 1.48502 * 109.47425 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47355 * 300.00062 * 25 23 21 29 29 C 1.47157 * 120.97899 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46824 * 59.99768 * 1 2 3 31 31 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46907 * 300.00071 * 1 2 3 33 33 H 1.09006 * 109.46878 * 59.99914 * 3 2 1 34 34 H 1.08999 * 109.47310 * 300.00622 * 3 2 1 35 35 H 0.97004 * 119.99796 * 0.02562 * 6 4 3 36 36 H 1.09000 * 109.47561 * 59.99678 * 7 6 4 37 37 H 1.09008 * 109.47330 * 300.00122 * 7 6 4 38 38 H 1.09000 * 109.46505 * 60.00172 * 8 7 6 39 39 H 1.08994 * 109.47096 * 300.00217 * 8 7 6 40 40 H 1.08996 * 109.64217 * 110.78153 * 12 11 9 41 41 H 1.08999 * 109.72598 * 350.21805 * 12 11 9 42 42 H 1.09002 * 109.51290 * 187.82368 * 13 12 11 43 43 H 1.08997 * 109.51158 * 67.72466 * 13 12 11 44 44 H 1.09002 * 109.47131 * 300.00120 * 19 17 15 45 45 H 1.09000 * 109.47070 * 60.00072 * 19 17 15 46 46 H 1.09005 * 109.47469 * 179.97438 * 19 17 15 47 47 H 0.97000 * 119.99908 * 25.00574 * 20 17 15 48 48 H 0.97001 * 120.00220 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.67827 * 9.75528 * 29 11 9 50 50 H 1.09000 * 109.68235 * 249.19910 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2766 2.2967 0.0013 7 6 5.7369 2.1810 0.0013 8 6 6.3593 3.5787 0.0014 9 6 7.8616 3.4596 0.0021 10 8 8.3831 2.3647 0.0020 11 7 8.6256 4.5700 0.0029 12 6 8.0146 5.9089 0.0025 13 6 8.6573 6.7329 -1.1191 14 8 10.0798 6.6832 -0.9853 15 6 10.6347 5.3724 -1.1187 16 1 10.3532 4.9545 -2.0853 17 6 12.1595 5.4505 -1.0203 18 1 12.5765 4.4435 -1.0329 19 6 12.5514 6.1485 0.2836 20 7 12.6840 6.2104 -2.1577 21 6 13.9680 6.0032 -2.5861 22 1 14.5940 5.2792 -2.0857 23 6 14.4650 6.7236 -3.6634 24 7 13.7024 7.6063 -4.2730 25 14 16.2164 6.4404 -4.2482 26 1 16.3777 5.0226 -4.6596 27 1 16.5018 7.3274 -5.4045 28 1 17.1623 6.7463 -3.1450 29 6 10.0943 4.4789 0.0030 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8594 3.1724 0.0017 36 1 6.0587 1.6405 -0.8889 37 1 6.0585 1.6396 0.8911 38 1 6.0376 4.1195 0.8915 39 1 6.0377 4.1197 -0.8884 40 1 8.1931 6.3933 0.9624 41 1 6.9422 5.8238 -0.1728 42 1 8.3211 7.7674 -1.0493 43 1 8.3679 6.3205 -2.0856 44 1 12.1344 7.1555 0.2962 45 1 12.1612 5.5830 1.1298 46 1 13.6377 6.2037 0.3539 47 1 12.1217 6.8605 -2.6073 48 1 14.0496 8.1095 -5.0261 49 1 10.3981 3.4467 -0.1715 50 1 10.4832 4.8194 0.9627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734177558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:40 Heat of formation + Delta-G solvation = -138.068373 kcal Electronic energy + Delta-G solvation = -30041.444135 eV Core-core repulsion = 25683.924299 eV Total energy + Delta-G solvation = -4357.519837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62621 -40.06588 -38.59835 -37.89298 -35.57694 -35.52334 -34.61370 -32.61358 -31.76767 -30.32932 -29.26252 -28.48218 -27.30931 -26.36837 -24.95623 -23.76381 -23.50275 -22.06121 -21.20150 -19.70913 -19.26280 -17.83165 -17.67382 -17.26135 -16.96657 -16.87729 -16.39327 -16.25230 -15.88423 -15.57396 -15.17818 -15.09970 -14.90929 -14.57002 -14.42204 -14.09127 -13.84312 -13.44236 -13.34745 -13.19461 -12.86640 -12.72594 -12.70161 -12.43827 -12.09730 -11.98454 -11.94414 -11.86980 -11.35356 -11.15792 -10.84752 -10.73508 -10.57480 -10.34064 -10.33559 -10.25327 -10.10438 -9.87939 -9.85040 -9.64991 -9.51433 -8.89213 -8.57058 -6.93796 -5.73588 -3.02369 2.21477 2.23914 2.38589 2.77232 3.46112 3.50502 3.51317 3.55910 3.91060 4.12345 4.32197 4.35756 4.53132 4.56117 4.57271 4.61604 4.68693 4.76402 4.79373 4.84299 4.95375 5.00979 5.12840 5.16930 5.28613 5.38184 5.46948 5.58838 5.62541 5.62768 5.65201 5.77182 5.92439 5.95378 5.96956 6.17076 6.30329 6.43094 6.44721 6.63827 6.81215 7.00415 7.13412 7.16955 7.42833 7.71598 7.80477 7.92949 8.44604 9.56553 10.13741 10.50398 11.48761 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.001691 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.158073 B =16551.908637 C =16797.705374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.512 6.512 6 N -0.732 5.732 7 C 0.135 3.865 8 C -0.152 4.152 9 C 0.519 3.481 10 O -0.534 6.534 11 N -0.613 5.613 12 C 0.071 3.929 13 C 0.045 3.955 14 O -0.357 6.357 15 C 0.076 3.924 16 H 0.064 0.936 17 C 0.184 3.816 18 H 0.060 0.940 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.082 3.918 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.034 0.966 46 H 0.052 0.948 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.101 0.899 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.264 -4.221 11.637 30.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.385 6.385 6 N -0.387 5.387 7 C 0.012 3.988 8 C -0.192 4.192 9 C 0.306 3.694 10 O -0.410 6.410 11 N -0.347 5.347 12 C -0.052 4.052 13 C -0.033 4.033 14 O -0.275 6.275 15 C 0.017 3.983 16 H 0.082 0.918 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.041 4.041 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.119 0.881 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.191 -5.706 11.615 30.113 hybrid contribution 0.116 0.871 -0.540 1.032 sum -27.075 -4.834 11.075 29.649 Atomic orbital electron populations 1.22859 0.80159 1.03511 1.00166 1.88035 1.19946 1.25059 1.95422 1.22227 0.91459 0.87218 1.02708 1.20252 0.88698 0.84555 0.76900 1.90783 1.74530 1.26419 1.46817 1.45839 1.07163 1.08765 1.76923 1.21056 0.77714 0.95540 1.04494 1.21826 0.93200 0.99160 1.05042 1.20268 0.88819 0.83970 0.76355 1.90759 1.74778 1.26008 1.49471 1.48192 1.07319 1.05827 1.73370 1.22535 0.98188 0.83228 1.01226 1.22901 0.83177 1.00676 0.96561 1.88116 1.18293 1.28295 1.92833 1.22976 0.96115 0.82718 0.96508 0.91839 1.20199 0.87053 0.95903 0.89487 0.92256 1.22416 1.01402 1.01217 0.97188 1.42337 1.13285 1.46749 1.33664 1.19212 0.89407 1.17973 1.10568 0.91199 1.24728 0.98173 0.99142 0.98784 1.69665 1.35817 1.28033 1.24441 0.86281 0.84661 0.77303 0.78008 1.21282 1.21739 1.21283 1.22512 0.78113 1.02771 1.00655 0.93702 0.88961 0.93730 0.90141 0.90086 0.76615 0.90190 0.90248 0.88101 0.88033 0.90259 0.89221 0.87834 0.92851 0.92456 0.94681 0.92874 0.77695 0.93534 0.88100 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.37 -3.34 10.24 -55.14 -0.56 -3.90 16 3 C 0.04 0.26 6.42 36.00 0.23 0.49 16 4 C 0.51 4.84 7.91 -10.99 -0.09 4.75 16 5 O -0.51 -7.77 16.50 -14.35 -0.24 -8.01 16 6 N -0.73 -4.66 5.56 -60.30 -0.33 -5.00 16 7 C 0.14 1.21 4.96 -4.04 -0.02 1.19 16 8 C -0.15 -1.01 4.19 -27.88 -0.12 -1.12 16 9 C 0.52 6.03 7.71 -10.98 -0.08 5.95 16 10 O -0.53 -8.51 15.45 5.56 0.09 -8.43 16 11 N -0.61 -6.99 3.02 -172.29 -0.52 -7.51 16 12 C 0.07 0.59 6.54 -3.52 -0.02 0.56 16 13 C 0.05 0.49 6.98 37.31 0.26 0.75 16 14 O -0.36 -5.72 9.24 -35.23 -0.33 -6.05 16 15 C 0.08 1.26 2.61 -26.61 -0.07 1.19 16 16 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 17 C 0.18 3.64 2.77 -67.94 -0.19 3.46 16 18 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 19 C -0.16 -2.94 9.06 37.15 0.34 -2.60 16 20 N -0.72 -18.10 5.10 -53.43 -0.27 -18.38 16 21 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 25 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 C 0.08 1.14 5.82 -3.55 -0.02 1.12 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.40 0.90 8.47 -40.82 -0.35 0.55 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16 38 H 0.10 0.40 8.01 -51.93 -0.42 -0.01 16 39 H 0.10 0.46 7.66 -51.93 -0.40 0.06 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.41 6.05 -51.93 -0.31 0.09 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.09 7.56 -51.93 -0.39 0.69 16 45 H 0.03 0.52 6.41 -51.93 -0.33 0.19 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.39 10.54 7.58 -40.82 -0.31 10.23 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 50 H 0.08 1.09 6.26 -51.93 -0.33 0.76 16 LS Contribution 407.38 15.07 6.14 6.14 Total: -1.00 -38.79 407.38 -7.48 -46.27 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.24 Total: 5.20 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 1.09 Total: 9.69 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.40 Total: -58.38 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.04 Total: -26.38 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.79 -7.48 -46.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734177558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.802 kcal (2) G-P(sol) polarization free energy of solvation -38.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds