Wall clock time and date at job start Wed Apr 1 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00314 * 2 1 4 4 C 1.50695 * 109.47222 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00159 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00075 * 180.02562 * 4 3 2 7 7 C 1.46492 * 120.00344 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47460 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46841 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00509 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99389 * 180.02562 * 9 8 7 12 12 C 1.47164 * 120.94464 * 359.97438 * 11 9 8 13 13 C 1.53300 * 108.37481 * 230.47489 * 12 11 9 14 14 O 1.42961 * 109.26618 * 307.77372 * 13 12 11 15 15 C 1.42967 * 114.16831 * 62.55217 * 14 13 12 16 16 H 1.09006 * 109.50903 * 57.39540 * 15 14 13 17 17 C 1.52992 * 109.51417 * 177.49773 * 15 14 13 18 18 H 1.09002 * 109.47110 * 175.00217 * 17 15 14 19 19 C 1.52995 * 109.47333 * 55.00084 * 17 15 14 20 20 N 1.46502 * 109.47236 * 294.99996 * 17 15 14 21 21 C 1.36933 * 120.00359 * 204.99994 * 20 17 15 22 22 H 1.08004 * 120.00076 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00055 * 180.02562 * 21 20 17 24 24 N 1.31615 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99904 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47264 * 59.99903 * 25 23 21 27 27 H 1.48502 * 109.47425 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47355 * 300.00062 * 25 23 21 29 29 C 1.47157 * 120.97899 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46824 * 59.99768 * 1 2 3 31 31 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46907 * 300.00071 * 1 2 3 33 33 H 1.09006 * 109.46878 * 59.99914 * 3 2 1 34 34 H 1.08999 * 109.47310 * 300.00622 * 3 2 1 35 35 H 0.97004 * 119.99796 * 0.02562 * 6 4 3 36 36 H 1.09000 * 109.47561 * 59.99678 * 7 6 4 37 37 H 1.09008 * 109.47330 * 300.00122 * 7 6 4 38 38 H 1.09000 * 109.46505 * 60.00172 * 8 7 6 39 39 H 1.08994 * 109.47096 * 300.00217 * 8 7 6 40 40 H 1.08996 * 109.64217 * 110.78153 * 12 11 9 41 41 H 1.08999 * 109.72598 * 350.21805 * 12 11 9 42 42 H 1.09002 * 109.51290 * 187.82368 * 13 12 11 43 43 H 1.08997 * 109.51158 * 67.72466 * 13 12 11 44 44 H 1.09002 * 109.47131 * 300.00120 * 19 17 15 45 45 H 1.09000 * 109.47070 * 60.00072 * 19 17 15 46 46 H 1.09005 * 109.47469 * 179.97438 * 19 17 15 47 47 H 0.97000 * 119.99908 * 25.00574 * 20 17 15 48 48 H 0.97001 * 120.00220 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.67827 * 9.75528 * 29 11 9 50 50 H 1.09000 * 109.68235 * 249.19910 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2766 2.2967 0.0013 7 6 5.7369 2.1810 0.0013 8 6 6.3593 3.5787 0.0014 9 6 7.8616 3.4596 0.0021 10 8 8.3831 2.3647 0.0020 11 7 8.6256 4.5700 0.0029 12 6 8.0146 5.9089 0.0025 13 6 8.6573 6.7329 -1.1191 14 8 10.0798 6.6832 -0.9853 15 6 10.6347 5.3724 -1.1187 16 1 10.3532 4.9545 -2.0853 17 6 12.1595 5.4505 -1.0203 18 1 12.5765 4.4435 -1.0329 19 6 12.5514 6.1485 0.2836 20 7 12.6840 6.2104 -2.1577 21 6 13.9680 6.0032 -2.5861 22 1 14.5940 5.2792 -2.0857 23 6 14.4650 6.7236 -3.6634 24 7 13.7024 7.6063 -4.2730 25 14 16.2164 6.4404 -4.2482 26 1 16.3777 5.0226 -4.6596 27 1 16.5018 7.3274 -5.4045 28 1 17.1623 6.7463 -3.1450 29 6 10.0943 4.4789 0.0030 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8594 3.1724 0.0017 36 1 6.0587 1.6405 -0.8889 37 1 6.0585 1.6396 0.8911 38 1 6.0376 4.1195 0.8915 39 1 6.0377 4.1197 -0.8884 40 1 8.1931 6.3933 0.9624 41 1 6.9422 5.8238 -0.1728 42 1 8.3211 7.7674 -1.0493 43 1 8.3679 6.3205 -2.0856 44 1 12.1344 7.1555 0.2962 45 1 12.1612 5.5830 1.1298 46 1 13.6377 6.2037 0.3539 47 1 12.1217 6.8605 -2.6073 48 1 14.0496 8.1095 -5.0261 49 1 10.3981 3.4467 -0.1715 50 1 10.4832 4.8194 0.9627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734177558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:40 Heat of formation + Delta-G solvation = -170.169522 kcal Electronic energy + Delta-G solvation = -30042.836146 eV Core-core repulsion = 25683.924299 eV Total energy + Delta-G solvation = -4358.911847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56318 -40.81724 -39.69477 -38.43310 -37.11990 -36.30018 -35.74806 -34.34711 -32.65331 -31.70336 -29.95539 -29.77081 -28.39982 -26.90208 -26.39725 -25.10693 -24.45227 -23.21669 -21.89949 -21.17642 -20.12727 -19.29682 -18.50906 -18.36504 -17.61792 -17.54523 -17.43333 -17.00888 -16.91455 -16.57870 -16.26838 -16.05899 -15.99792 -15.69442 -15.38716 -15.22389 -14.94556 -14.87638 -14.33024 -14.09518 -14.03662 -13.99484 -13.61071 -13.34852 -13.15074 -13.06102 -12.80930 -12.69709 -12.53538 -12.43041 -12.34692 -12.33283 -12.21702 -11.82514 -11.63754 -11.56695 -11.18477 -11.02900 -10.92189 -10.80770 -10.74794 -10.21626 -9.58700 -9.00498 -7.92338 -5.20789 1.47161 1.50109 1.50795 1.53647 1.56065 1.58596 2.02699 2.56845 2.82050 3.11966 3.41262 3.45717 3.59007 3.72417 3.80349 3.94927 4.00623 4.03086 4.04200 4.18422 4.22968 4.31260 4.36482 4.39007 4.41842 4.51683 4.54908 4.60037 4.62573 4.65495 4.79579 4.84687 4.88198 4.89551 4.90448 5.00152 5.09802 5.24355 5.29218 5.31541 5.51335 5.62216 6.06118 6.27537 6.28166 6.32089 6.54350 7.04328 7.22622 7.35805 8.11463 8.36524 9.30840 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.001691 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.158073 B =16551.908637 C =16797.705374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.047 3.953 4 C 0.503 3.497 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.140 3.860 8 C -0.134 4.134 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.613 5.613 12 C 0.075 3.925 13 C 0.033 3.967 14 O -0.384 6.384 15 C 0.093 3.907 16 H 0.038 0.962 17 C 0.174 3.826 18 H 0.054 0.946 19 C -0.147 4.147 20 N -0.732 5.732 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.278 1.278 29 C 0.091 3.909 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.426 0.574 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.035 0.965 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.082 0.918 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.960 -2.555 13.094 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.290 3.710 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.015 3.985 8 C -0.174 4.174 9 C 0.301 3.699 10 O -0.468 6.468 11 N -0.347 5.347 12 C -0.047 4.047 13 C -0.044 4.044 14 O -0.303 6.303 15 C 0.034 3.966 16 H 0.056 0.944 17 C 0.065 3.935 18 H 0.072 0.928 19 C -0.207 4.207 20 N -0.372 5.372 21 C -0.374 4.374 22 H 0.093 0.907 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.204 1.204 29 C -0.032 4.032 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.113 0.887 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.100 0.900 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.942 -3.980 13.120 32.932 hybrid contribution 0.862 0.364 -0.955 1.337 sum -29.079 -3.616 12.165 31.728 Atomic orbital electron populations 1.23025 0.78177 1.04032 1.01817 1.87975 1.22250 1.27221 1.95846 1.22415 0.88263 0.86696 1.05859 1.21126 0.90587 0.83975 0.75345 1.90754 1.75999 1.29170 1.50260 1.45570 1.05908 1.09529 1.75264 1.20784 0.79312 0.96725 1.01693 1.21809 0.88777 0.98104 1.08685 1.21179 0.90866 0.82998 0.74871 1.90747 1.76113 1.28157 1.51810 1.48293 1.06088 1.07403 1.72882 1.22790 1.00340 0.80747 1.00787 1.23277 0.80537 1.02976 0.97615 1.88058 1.21679 1.27536 1.93009 1.22486 0.93988 0.83808 0.96352 0.94435 1.20439 0.89548 0.94954 0.88588 0.92793 1.22200 1.00190 1.00979 0.97286 1.42498 1.12488 1.47091 1.35137 1.19614 0.90521 1.17173 1.10133 0.90705 1.25523 1.02106 0.99563 0.99469 1.69823 1.37523 1.29431 1.25077 0.85246 0.80214 0.77162 0.77336 1.20610 1.22138 1.20402 1.22176 0.80469 1.00872 0.99731 0.92069 0.89229 0.91922 0.86589 0.86798 0.73562 0.93566 0.92984 0.83774 0.84517 0.88653 0.84302 0.85244 0.93428 0.93295 0.91164 0.94631 0.79213 0.94118 0.89973 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.11 10.24 -129.94 -1.33 -8.44 16 3 C 0.05 0.43 6.42 71.23 0.46 0.89 16 4 C 0.50 9.01 7.91 87.66 0.69 9.71 16 5 O -0.58 -18.54 16.50 16.02 0.26 -18.28 16 6 N -0.71 -7.24 5.56 -463.07 -2.57 -9.81 16 7 C 0.14 2.35 4.96 86.38 0.43 2.78 16 8 C -0.13 -1.26 4.19 29.85 0.12 -1.14 16 9 C 0.51 11.03 7.71 87.66 0.68 11.70 16 10 O -0.59 -19.22 15.45 -3.02 -0.05 -19.27 16 11 N -0.61 -12.58 3.02 -817.38 -2.47 -15.05 16 12 C 0.07 0.89 6.54 86.35 0.56 1.46 16 13 C 0.03 0.63 6.98 72.08 0.50 1.13 16 14 O -0.38 -11.97 9.24 -148.98 -1.38 -13.35 16 15 C 0.09 3.11 2.61 30.67 0.08 3.19 16 16 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 17 C 0.17 6.99 2.77 44.99 0.12 7.11 16 18 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 19 C -0.15 -5.26 9.06 71.98 0.65 -4.60 16 20 N -0.73 -37.87 5.10 -322.96 -1.65 -39.52 16 21 C -0.24 -13.74 9.93 84.03 0.83 -12.91 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 24 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 25 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 29 C 0.09 2.48 5.82 86.34 0.50 2.99 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.12 0.22 8.14 -2.38 -0.02 0.21 16 34 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.43 -0.12 8.47 -92.71 -0.79 -0.90 16 36 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 38 H 0.14 0.23 8.01 -2.39 -0.02 0.21 16 39 H 0.14 0.43 7.66 -2.39 -0.02 0.41 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.14 0.31 6.05 -2.39 -0.01 0.30 16 42 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 1.82 7.56 -2.39 -0.02 1.81 16 45 H 0.07 1.99 6.41 -2.39 -0.02 1.98 16 46 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.38 21.09 7.58 -92.71 -0.70 20.39 16 48 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.08 2.55 7.08 -2.38 -0.02 2.54 16 50 H 0.09 2.29 6.26 -2.39 -0.01 2.28 16 Total: -1.00 -93.17 407.38 -0.04 -93.21 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.53 Total: 21.48 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 7.36 Total: 19.87 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -6.41 Total: -124.16 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -2.49 Total: -59.33 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -93.17 -0.04 -93.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734177558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.960 kcal (2) G-P(sol) polarization free energy of solvation -93.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds