Wall clock time and date at job start Wed Apr 1 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99890 * 2 1 4 4 C 1.50698 * 109.47161 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99971 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00221 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00109 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46977 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46910 * 179.97438 * 8 7 6 10 10 O 1.21274 * 119.99903 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99615 * 179.97438 * 9 8 7 12 12 C 1.47151 * 120.98436 * 0.02710 * 11 9 8 13 13 C 1.53292 * 108.38215 * 230.50996 * 12 11 9 14 14 O 1.42959 * 109.22441 * 307.69471 * 13 12 11 15 15 C 1.42968 * 114.16543 * 62.58282 * 14 13 12 16 16 H 1.09002 * 109.51348 * 57.34206 * 15 14 13 17 17 C 1.53001 * 109.55409 * 177.47266 * 15 14 13 18 18 H 1.09002 * 109.47126 * 184.87391 * 17 15 14 19 19 C 1.53006 * 109.46809 * 304.86957 * 17 15 14 20 20 N 1.46497 * 109.47254 * 64.87091 * 17 15 14 21 21 C 1.36943 * 119.99769 * 154.99954 * 20 17 15 22 22 H 1.08003 * 119.99763 * 0.02562 * 21 20 17 23 23 C 1.38809 * 119.99898 * 179.97438 * 21 20 17 24 24 N 1.31626 * 120.00076 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00015 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46998 * 90.00151 * 25 23 21 27 27 H 1.48502 * 109.47139 * 209.99889 * 25 23 21 28 28 H 1.48500 * 109.47158 * 330.00107 * 25 23 21 29 29 C 1.47156 * 120.97789 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47141 * 300.00274 * 1 2 3 31 31 H 1.08998 * 109.46824 * 60.00184 * 1 2 3 32 32 H 1.09000 * 109.46804 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47261 * 59.99607 * 3 2 1 34 34 H 1.08999 * 109.47164 * 300.00019 * 3 2 1 35 35 H 0.97000 * 119.99332 * 359.97438 * 6 4 3 36 36 H 1.08998 * 109.47015 * 59.99719 * 7 6 4 37 37 H 1.08999 * 109.47156 * 299.99822 * 7 6 4 38 38 H 1.08998 * 109.47358 * 60.00076 * 8 7 6 39 39 H 1.08999 * 109.47151 * 299.99971 * 8 7 6 40 40 H 1.09001 * 109.68225 * 350.23291 * 12 11 9 41 41 H 1.09000 * 109.68314 * 110.75081 * 12 11 9 42 42 H 1.09000 * 109.51207 * 67.61969 * 13 12 11 43 43 H 1.09001 * 109.51296 * 187.72254 * 13 12 11 44 44 H 1.09002 * 109.46922 * 60.00309 * 19 17 15 45 45 H 1.08998 * 109.46831 * 180.02562 * 19 17 15 46 46 H 1.09000 * 109.47040 * 300.00082 * 19 17 15 47 47 H 0.97001 * 120.00284 * 335.00041 * 20 17 15 48 48 H 0.96994 * 120.00187 * 179.97438 * 24 23 21 49 49 H 1.08992 * 109.68107 * 9.77622 * 29 11 9 50 50 H 1.08994 * 109.71325 * 249.22900 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2969 0.0013 7 6 5.7369 2.1812 0.0013 8 6 6.3591 3.5790 0.0014 9 6 7.8615 3.4600 0.0021 10 8 8.3830 2.3651 0.0020 11 7 8.6253 4.5704 0.0018 12 6 8.0153 5.9095 0.0014 13 6 8.6569 6.7326 -1.1214 14 8 10.0793 6.6830 -0.9877 15 6 10.6343 5.3721 -1.1204 16 1 10.3519 4.9532 -2.0863 17 6 12.1592 5.4494 -1.0229 18 1 12.5857 4.4639 -1.2103 19 6 12.6872 6.4396 -2.0630 20 7 12.5407 5.8997 0.3179 21 6 13.7705 5.5748 0.8252 22 1 14.4592 4.9868 0.2366 23 6 14.1322 6.0019 2.0955 24 7 13.2933 6.7197 2.8122 25 14 15.8099 5.5592 2.7873 26 1 16.7893 6.6148 2.4240 27 1 15.7232 5.4523 4.2659 28 1 16.2511 4.2589 2.2219 29 6 10.0941 4.4793 0.0031 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8592 3.1726 0.0009 36 1 6.0585 1.6407 -0.8889 37 1 6.0584 1.6399 0.8910 38 1 6.0375 4.1199 0.8914 39 1 6.0375 4.1200 -0.8885 40 1 6.9427 5.8242 -0.1727 41 1 8.1940 6.3946 0.9610 42 1 8.3673 6.3186 -2.0873 43 1 8.3199 7.7669 -1.0528 44 1 12.2608 7.4251 -1.8756 45 1 13.7736 6.4943 -1.9939 46 1 12.4034 6.1045 -3.0606 47 1 11.9222 6.4280 0.8464 48 1 13.5459 7.0178 3.6999 49 1 10.3980 3.4471 -0.1701 50 1 10.4828 4.8205 0.9625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734177560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:47 Heat of formation + Delta-G solvation = -169.197406 kcal Electronic energy + Delta-G solvation = -30328.211876 eV Core-core repulsion = 25969.342183 eV Total energy + Delta-G solvation = -4358.869693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53471 -40.81193 -39.67190 -38.43171 -37.09859 -36.30055 -35.77473 -34.16781 -32.63767 -31.51654 -30.14963 -29.78145 -28.67443 -26.87646 -25.94829 -25.20110 -24.43749 -23.16521 -21.89877 -21.20561 -20.12501 -19.32000 -18.52274 -18.35940 -17.60722 -17.55049 -17.43648 -17.00951 -16.81273 -16.56440 -16.23444 -16.05801 -15.91102 -15.69608 -15.38220 -15.09847 -14.89282 -14.85622 -14.50813 -14.06372 -14.02629 -13.95262 -13.49250 -13.29595 -13.14705 -13.04180 -12.78411 -12.66436 -12.57847 -12.48204 -12.43344 -12.33699 -12.18570 -11.76773 -11.67885 -11.51739 -11.11644 -11.01860 -10.93897 -10.79589 -10.74616 -10.21987 -9.58322 -8.94969 -7.90917 -5.17610 1.47465 1.48292 1.52565 1.53841 1.56338 1.58596 2.04201 2.57396 2.84283 3.12103 3.43467 3.46242 3.67418 3.76304 3.80330 3.95423 3.99529 4.01521 4.08777 4.22408 4.23012 4.29965 4.31722 4.38719 4.45292 4.51927 4.56846 4.60276 4.65695 4.78343 4.83553 4.85118 4.89251 4.89959 4.91218 5.05724 5.11681 5.22287 5.29268 5.34031 5.53777 5.62296 6.06309 6.28934 6.33159 6.34922 6.54481 7.06063 7.22633 7.38445 8.14100 8.39468 9.32276 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.001900 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.443045 B =14729.432451 C =15469.530286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.047 3.953 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.706 5.706 7 C 0.141 3.859 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.591 6.591 11 N -0.612 5.612 12 C 0.068 3.932 13 C 0.038 3.962 14 O -0.386 6.386 15 C 0.096 3.904 16 H 0.076 0.924 17 C 0.170 3.830 18 H 0.055 0.945 19 C -0.146 4.146 20 N -0.725 5.725 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.966 3.034 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.273 1.273 29 C 0.094 3.906 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.426 0.574 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.130 0.870 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.377 0.623 48 H 0.249 0.751 49 H 0.073 0.927 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.938 0.296 -10.253 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.362 5.362 7 C 0.016 3.984 8 C -0.172 4.172 9 C 0.298 3.702 10 O -0.472 6.472 11 N -0.345 5.345 12 C -0.054 4.054 13 C -0.038 4.038 14 O -0.305 6.305 15 C 0.036 3.964 16 H 0.094 0.906 17 C 0.061 3.939 18 H 0.073 0.927 19 C -0.206 4.206 20 N -0.366 5.366 21 C -0.368 4.368 22 H 0.092 0.908 23 C -0.266 4.266 24 N -0.617 5.617 25 Si 0.796 3.204 26 H -0.215 1.215 27 H -0.225 1.225 28 H -0.198 1.198 29 C -0.030 4.030 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.265 0.735 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.210 0.790 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -28.926 -1.140 -10.210 30.696 hybrid contribution 0.918 0.160 1.002 1.368 sum -28.008 -0.980 -9.208 29.499 Atomic orbital electron populations 1.23027 0.78164 1.04036 1.01827 1.87977 1.22266 1.27201 1.95848 1.22410 0.88162 0.86704 1.05884 1.21151 0.90623 0.83949 0.75339 1.90756 1.76015 1.29174 1.50268 1.45566 1.05827 1.09567 1.75264 1.20764 0.79361 0.96636 1.01665 1.21799 0.88507 0.98177 1.08683 1.21246 0.90961 0.82974 0.74985 1.90738 1.76213 1.28223 1.52006 1.48315 1.06072 1.07427 1.72656 1.22809 1.00674 0.81065 1.00848 1.23273 0.80291 1.02715 0.97567 1.88068 1.21745 1.27334 1.93321 1.22548 0.93824 0.83468 0.96513 0.90584 1.20520 0.90454 0.96669 0.86222 0.92697 1.22136 1.00004 1.00173 0.98279 1.42487 1.16349 1.63664 1.14124 1.19622 0.93385 1.25914 0.97891 0.90826 1.25443 1.01528 1.01722 0.97887 1.69815 1.37058 1.43179 1.11668 0.85239 0.80314 0.77921 0.76900 1.21497 1.22510 1.19796 1.22013 0.80025 1.00751 1.00213 0.92046 0.91920 0.89221 0.86775 0.86542 0.73548 0.92997 0.93630 0.84567 0.83670 0.83868 0.90953 0.91214 0.85257 0.93350 0.94527 0.91482 0.78993 0.94263 0.90831 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.40 10.24 -129.94 -1.33 -8.73 16 3 C 0.05 0.47 6.42 71.24 0.46 0.93 16 4 C 0.50 9.59 7.91 87.66 0.69 10.28 16 5 O -0.58 -19.26 16.50 16.00 0.26 -19.00 16 6 N -0.71 -8.26 5.56 -463.07 -2.57 -10.83 16 7 C 0.14 2.66 4.96 86.38 0.43 3.09 16 8 C -0.13 -1.59 4.19 29.85 0.13 -1.46 16 9 C 0.51 13.01 7.71 87.66 0.68 13.68 16 10 O -0.59 -21.86 15.45 -3.01 -0.05 -21.91 16 11 N -0.61 -15.68 3.02 -817.29 -2.47 -18.15 16 12 C 0.07 1.10 6.54 86.35 0.56 1.66 16 13 C 0.04 0.68 6.98 72.08 0.50 1.19 16 14 O -0.39 -11.70 9.25 -148.98 -1.38 -13.08 16 15 C 0.10 3.10 2.57 30.71 0.08 3.18 16 16 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 17 C 0.17 6.72 2.80 44.99 0.13 6.85 16 18 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 19 C -0.15 -5.21 9.30 71.98 0.67 -4.54 16 20 N -0.73 -36.32 4.24 -322.93 -1.37 -37.69 16 21 C -0.24 -13.16 9.93 84.03 0.83 -12.33 16 22 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 25 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 28 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 29 C 0.09 3.30 5.82 86.37 0.50 3.80 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.43 0.45 8.47 -92.71 -0.79 -0.34 16 36 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.14 0.80 8.02 -2.39 -0.02 0.78 16 39 H 0.15 0.52 7.66 -2.39 -0.02 0.50 16 40 H 0.14 0.71 6.05 -2.39 -0.01 0.69 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.80 7.57 -2.39 -0.02 1.78 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.38 20.49 7.08 -92.71 -0.66 19.84 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 49 H 0.07 2.88 7.08 -2.39 -0.02 2.87 16 50 H 0.06 2.52 6.93 -2.39 -0.02 2.50 16 Total: -1.00 -92.29 408.66 0.29 -91.99 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.49 Total: 23.42 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 7.37 Total: 23.98 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -6.13 Total: -125.77 kcal Atomic # 8 Polarization: -60.22 SS G_CDS: -2.49 Total: -62.71 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -92.29 0.29 -91.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734177560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.203 kcal (2) G-P(sol) polarization free energy of solvation -92.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds