Wall clock time and date at job start Wed Apr 1 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00280 * 2 1 4 4 C 1.53001 * 109.46742 * 90.00163 * 3 2 1 5 5 H 1.09005 * 109.47110 * 305.00091 * 4 3 2 6 6 O 1.42900 * 109.47013 * 65.00295 * 4 3 2 7 7 C 1.53002 * 109.46790 * 185.00450 * 4 3 2 8 8 N 1.46907 * 109.46845 * 180.02562 * 7 4 3 9 9 C 1.46902 * 110.99867 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.47056 * 179.97438 * 9 8 7 11 11 O 1.21298 * 119.99959 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99855 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99741 * 180.02562 * 12 10 9 14 14 H 1.08008 * 120.00378 * 0.02562 * 13 12 10 15 15 C 1.38945 * 120.00227 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00486 * 180.02562 * 15 13 12 17 17 Si 1.86809 * 119.99602 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46705 * 90.00055 * 17 15 13 19 19 H 1.48500 * 109.46802 * 210.00098 * 17 15 13 20 20 H 1.48492 * 109.47114 * 329.99751 * 17 15 13 21 21 C 1.34777 * 119.99863 * 180.02562 * 2 1 3 22 22 O 1.21280 * 119.99559 * 184.55563 * 21 2 1 23 23 C 1.50703 * 120.00141 * 4.54986 * 21 2 1 24 24 C 1.53172 * 109.54224 * 285.83990 * 23 21 2 25 25 C 1.53090 * 109.16383 * 183.15281 * 24 23 21 26 26 O 1.42903 * 109.41522 * 57.60721 * 25 24 23 27 27 C 1.42909 * 114.09879 * 298.84176 * 26 25 24 28 28 C 1.53098 * 109.41057 * 61.15860 * 27 26 25 29 29 H 1.08998 * 109.47270 * 84.56706 * 1 2 3 30 30 H 1.08997 * 109.47146 * 204.56716 * 1 2 3 31 31 H 1.08999 * 109.47012 * 324.56174 * 1 2 3 32 32 H 1.09007 * 109.46838 * 330.00666 * 3 2 1 33 33 H 1.08992 * 109.47366 * 210.00672 * 3 2 1 34 34 H 0.96698 * 113.99567 * 59.99743 * 6 4 3 35 35 H 1.08996 * 109.47447 * 60.00435 * 7 4 3 36 36 H 1.08997 * 109.47143 * 299.99485 * 7 4 3 37 37 H 1.00896 * 110.99823 * 303.94954 * 8 7 4 38 38 H 1.08997 * 109.47020 * 299.99672 * 9 8 7 39 39 H 1.08999 * 109.47039 * 59.99933 * 9 8 7 40 40 H 0.96992 * 120.00133 * 0.02562 * 12 10 9 41 41 H 0.96996 * 119.99671 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.54008 * 46.10732 * 23 21 2 43 43 H 1.09004 * 109.52573 * 303.05724 * 24 23 21 44 44 H 1.09001 * 109.52810 * 63.24228 * 24 23 21 45 45 H 1.09001 * 109.48272 * 297.62862 * 25 24 23 46 46 H 1.09003 * 109.48209 * 177.58722 * 25 24 23 47 47 H 1.08993 * 109.47821 * 301.17850 * 27 26 25 48 48 H 1.08995 * 109.48845 * 181.14441 * 27 26 25 49 49 H 1.09000 * 109.51776 * 182.48820 * 28 27 26 50 50 H 1.09000 * 109.51967 * 62.30076 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 1.4425 5 1 1.5062 1.7548 1.9816 6 8 3.3210 0.7723 2.0813 7 6 3.1061 3.0937 1.4444 8 7 3.3515 3.5174 2.8295 9 6 3.9803 4.8444 2.8704 10 6 4.2156 5.2447 4.3041 11 8 3.8917 4.4978 5.2033 12 7 4.7867 6.4322 4.5871 13 6 5.0012 6.7962 5.8913 14 1 4.7129 6.1312 6.6921 15 6 5.5896 8.0206 6.1832 16 7 5.7956 8.3693 7.4334 17 14 6.0877 9.1712 4.7984 18 1 4.9543 10.0741 4.4733 19 1 7.2585 9.9797 5.2236 20 1 6.4461 8.3745 3.5977 21 6 2.1389 -1.1672 -0.0005 22 8 3.3488 -1.1689 0.0829 23 6 1.3889 -2.4702 -0.1046 24 6 0.6979 -2.7716 1.2287 25 6 0.0046 -4.1336 1.1388 26 8 0.9676 -5.1359 0.8071 27 6 1.6122 -4.9318 -0.4520 28 6 2.3701 -3.6018 -0.4259 29 1 -0.3634 0.0973 -1.0230 30 1 -0.3633 -0.9346 0.4272 31 1 -0.3633 0.8373 0.5959 32 1 1.6084 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5139 34 1 4.1837 0.6809 1.6541 35 1 2.4437 3.8091 0.9572 36 1 4.0524 3.0492 0.9054 37 1 2.4985 3.5044 3.3681 38 1 4.9326 4.8117 2.3410 39 1 3.3241 5.5723 2.3933 40 1 5.0460 7.0293 3.8680 41 1 6.2060 9.2243 7.6370 42 1 0.6426 -2.3991 -0.8958 43 1 1.4398 -2.7926 2.0270 44 1 -0.0422 -1.9993 1.4383 45 1 -0.7650 -4.0996 0.3677 46 1 -0.4528 -4.3727 2.0989 47 1 0.8636 -4.9081 -1.2439 48 1 2.3127 -5.7458 -0.6381 49 1 2.8258 -3.4232 -1.3999 50 1 3.1458 -3.6396 0.3389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734507074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:24 Heat of formation + Delta-G solvation = -188.443671 kcal Electronic energy + Delta-G solvation = -30295.102951 eV Core-core repulsion = 25935.398677 eV Total energy + Delta-G solvation = -4359.704273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54118 -40.35081 -39.75080 -38.59638 -36.52806 -36.15893 -35.60966 -34.69859 -33.76558 -32.14448 -31.47538 -29.10176 -27.77647 -27.17969 -25.85604 -24.62487 -24.28519 -22.70865 -21.63565 -21.30310 -20.29981 -20.12768 -18.29661 -18.15346 -17.51347 -17.37821 -17.14806 -16.92299 -16.78149 -16.50960 -16.21682 -16.02076 -15.80117 -15.59698 -15.17317 -14.99185 -14.87190 -14.62111 -14.46551 -14.40655 -14.19606 -13.74257 -13.61810 -13.50370 -13.26544 -13.08019 -12.99305 -12.76607 -12.56384 -12.50099 -12.43063 -12.17755 -11.99828 -11.99189 -11.69048 -11.52948 -11.44248 -11.16475 -10.87219 -10.46598 -10.35729 -10.26810 -9.53214 -9.27691 -8.42684 -6.04173 1.29336 1.34687 1.44171 1.62953 1.93760 2.01221 2.22151 2.70316 2.97111 3.13466 3.30329 3.47213 3.64386 3.71084 3.75152 3.84066 3.97839 4.07823 4.12546 4.17821 4.23817 4.25221 4.30838 4.38389 4.45309 4.49415 4.51653 4.60566 4.61285 4.63074 4.69486 4.75603 4.77320 4.82507 4.89918 5.08253 5.11056 5.16730 5.27272 5.50048 5.53543 5.88580 6.03720 6.27587 6.34683 6.39428 6.58320 6.86340 6.88644 7.22433 7.37722 7.95081 8.75134 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027223 B = 0.001703 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.281879 B =16433.547008 C =16761.848260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.611 5.611 3 C 0.089 3.911 4 C 0.097 3.903 5 H 0.090 0.910 6 O -0.563 6.563 7 C 0.034 3.966 8 N -0.684 5.684 9 C 0.064 3.936 10 C 0.445 3.555 11 O -0.616 6.616 12 N -0.590 5.590 13 C -0.332 4.332 14 H 0.052 0.948 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.254 1.254 19 H -0.275 1.275 20 H -0.232 1.232 21 C 0.514 3.486 22 O -0.572 6.572 23 C -0.102 4.102 24 C -0.148 4.148 25 C 0.061 3.939 26 O -0.408 6.408 27 C 0.063 3.937 28 C -0.136 4.136 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.375 0.625 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.342 0.658 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.390 0.610 41 H 0.280 0.720 42 H 0.124 0.876 43 H 0.047 0.953 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.080 0.920 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.035 -19.033 -28.979 38.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.343 5.343 3 C -0.034 4.034 4 C 0.037 3.963 5 H 0.108 0.892 6 O -0.369 6.369 7 C -0.096 4.096 8 N -0.317 5.317 9 C -0.068 4.068 10 C 0.233 3.767 11 O -0.501 6.501 12 N -0.232 5.232 13 C -0.461 4.461 14 H 0.071 0.929 15 C -0.215 4.215 16 N -0.575 5.575 17 Si 0.788 3.212 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.155 1.155 21 C 0.303 3.697 22 O -0.451 6.451 23 C -0.123 4.123 24 C -0.185 4.185 25 C -0.015 4.015 26 O -0.328 6.328 27 C -0.014 4.014 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.223 0.777 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.161 0.839 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.142 0.858 43 H 0.066 0.934 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.098 0.902 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.437 -19.940 -27.625 37.404 hybrid contribution 0.474 1.879 -0.318 1.964 sum -14.963 -18.061 -27.943 36.481 Atomic orbital electron populations 1.22351 0.77331 1.04991 1.03740 1.47803 1.08238 1.05161 1.73089 1.22153 0.98869 0.86166 0.96246 1.22344 0.93476 0.87081 0.93442 0.89164 1.86576 1.29621 1.63009 1.57684 1.22686 1.01585 0.96543 0.88744 1.59889 1.32808 1.26131 1.12858 1.21630 1.02342 0.91373 0.91465 1.21072 0.81507 0.81618 0.92454 1.90558 1.55975 1.53267 1.50296 1.42016 1.56496 1.17828 1.06817 1.19012 1.39972 1.03412 0.83693 0.92942 1.26166 0.96368 0.98761 1.00189 1.69811 1.43709 1.23633 1.20350 0.85322 0.79117 0.78454 0.78328 1.17862 1.20015 1.15489 1.21012 0.87610 0.86223 0.74877 1.90649 1.16236 1.87710 1.50491 1.21378 0.98880 0.91375 1.00631 1.22326 1.00704 1.00050 0.95462 1.22745 0.90309 0.85756 1.02718 1.87938 1.56804 1.49080 1.38951 1.22709 0.96486 0.96498 0.85688 1.21999 0.97985 0.94678 1.02719 0.90172 0.89047 0.90125 0.86434 0.90572 0.77713 0.91613 0.89914 0.83929 0.87109 0.90047 0.77390 0.91100 0.85795 0.93428 0.87832 0.90199 0.87818 0.90635 0.88037 0.90169 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.00 127.77 1.28 1.61 16 2 N -0.61 -8.46 2.86 -846.76 -2.42 -10.88 16 3 C 0.09 1.24 5.13 86.38 0.44 1.69 16 4 C 0.10 1.91 3.42 30.60 0.10 2.02 16 5 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 6 O -0.56 -16.25 11.94 -136.96 -1.64 -17.89 16 7 C 0.03 0.66 5.35 86.30 0.46 1.12 16 8 N -0.68 -20.69 5.99 -517.93 -3.10 -23.79 16 9 C 0.06 1.97 6.17 85.56 0.53 2.50 16 10 C 0.45 20.72 7.82 87.66 0.69 21.40 16 11 O -0.62 -35.71 15.78 -3.09 -0.05 -35.76 16 12 N -0.59 -28.35 5.09 -306.98 -1.56 -29.91 16 13 C -0.33 -19.87 10.16 84.04 0.85 -19.01 16 14 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 15 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 16 N -0.93 -57.12 13.96 21.66 0.30 -56.81 16 17 Si 0.97 38.99 27.74 68.60 1.90 40.90 16 18 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 21 C 0.51 9.89 6.61 87.66 0.58 10.47 16 22 O -0.57 -15.98 14.24 8.99 0.13 -15.85 16 23 C -0.10 -1.32 1.77 -11.42 -0.02 -1.34 16 24 C -0.15 -1.87 5.10 30.68 0.16 -1.71 16 25 C 0.06 0.63 6.84 72.01 0.49 1.12 16 26 O -0.41 -6.62 10.77 -148.98 -1.60 -8.23 16 27 C 0.06 0.73 6.84 72.01 0.49 1.22 16 28 C -0.14 -2.08 4.87 30.69 0.15 -1.93 16 29 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.09 0.36 3.99 -2.39 -0.01 0.35 16 31 H 0.08 0.38 8.11 -2.39 -0.02 0.36 16 32 H 0.12 0.85 8.07 -2.38 -0.02 0.83 16 33 H 0.08 1.27 7.49 -2.39 -0.02 1.25 16 34 H 0.38 10.37 8.64 -74.06 -0.64 9.73 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.34 11.22 8.43 -89.70 -0.76 10.46 16 38 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 41 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.12 0.81 7.67 -2.39 -0.02 0.79 16 43 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.10 0.87 5.48 -2.39 -0.01 0.86 16 45 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.05 1.12 7.85 -2.39 -0.02 1.11 16 Total: -1.00 -90.52 399.57 -2.38 -92.90 By element: Atomic # 1 Polarization: 47.64 SS G_CDS: -1.01 Total: 46.64 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.67 Total: 18.70 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -6.78 Total: -121.40 kcal Atomic # 8 Polarization: -74.57 SS G_CDS: -3.16 Total: -77.73 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.90 Total: 40.90 kcal Total: -90.52 -2.38 -92.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734507074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.543 kcal (2) G-P(sol) polarization free energy of solvation -90.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds