Wall clock time and date at job start Wed Apr 1 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99867 * 2 1 4 4 C 1.50695 * 109.47309 * 66.04896 * 3 2 1 5 5 O 1.21291 * 119.99745 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00212 * 179.97438 * 4 3 2 7 7 C 1.37095 * 119.99990 * 179.97438 * 6 4 3 8 8 H 1.07995 * 120.00239 * 0.02562 * 7 6 4 9 9 C 1.38955 * 119.99756 * 180.02562 * 7 6 4 10 10 N 1.31404 * 120.00305 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47198 * 59.99736 * 11 9 7 13 13 H 1.48497 * 109.46890 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46783 * 299.99755 * 11 9 7 15 15 C 1.46906 * 110.99863 * 236.04855 * 2 1 3 16 16 C 1.52999 * 109.46912 * 293.95141 * 15 2 1 17 17 H 1.08993 * 109.47361 * 60.00092 * 16 15 2 18 18 O 1.42909 * 109.46963 * 299.99829 * 16 15 2 19 19 C 1.53000 * 109.47129 * 180.02562 * 16 15 2 20 20 N 1.46494 * 109.47229 * 184.99964 * 19 16 15 21 21 C 1.46503 * 120.00126 * 269.99836 * 20 19 16 22 22 C 1.34776 * 120.00214 * 89.99908 * 20 19 16 23 23 O 1.21282 * 119.99576 * 4.63338 * 22 20 19 24 24 C 1.50700 * 120.00193 * 184.63627 * 22 20 19 25 25 H 1.08999 * 110.33386 * 308.24566 * 24 22 20 26 26 C 1.54488 * 110.37185 * 70.49655 * 24 22 20 27 27 C 1.54509 * 104.06195 * 142.92179 * 26 24 22 28 28 C 1.54482 * 104.06143 * 359.97438 * 27 26 24 29 29 O 1.44419 * 110.46791 * 185.93125 * 24 22 20 30 30 H 1.09004 * 109.47118 * 183.95749 * 1 2 3 31 31 H 1.09008 * 109.47080 * 303.95085 * 1 2 3 32 32 H 1.08998 * 109.47544 * 63.95789 * 1 2 3 33 33 H 1.09004 * 109.46624 * 186.04868 * 3 2 1 34 34 H 1.08996 * 109.46916 * 306.04525 * 3 2 1 35 35 H 0.97001 * 119.99890 * 359.97438 * 6 4 3 36 36 H 0.96996 * 120.00542 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46888 * 173.95533 * 15 2 1 38 38 H 1.08998 * 109.47480 * 53.95205 * 15 2 1 39 39 H 0.96697 * 114.00517 * 299.99847 * 18 16 15 40 40 H 1.09005 * 109.47194 * 64.99971 * 19 16 15 41 41 H 1.09002 * 109.47091 * 305.00261 * 19 16 15 42 42 H 1.09002 * 109.47394 * 264.34850 * 21 20 19 43 43 H 1.09005 * 109.46973 * 24.34530 * 21 20 19 44 44 H 1.08999 * 109.47595 * 144.34284 * 21 20 19 45 45 H 1.08990 * 110.50864 * 24.27655 * 26 24 22 46 46 H 1.08996 * 110.62441 * 261.62352 * 26 24 22 47 47 H 1.09003 * 110.50990 * 241.35479 * 27 26 24 48 48 H 1.09003 * 110.62810 * 118.70209 * 27 26 24 49 49 H 1.09004 * 110.37315 * 94.85648 * 28 27 26 50 50 H 1.08999 * 110.37060 * 217.18827 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0047 1.4456 2.1407 6 7 2.0189 3.3199 1.5237 7 6 1.6923 3.9347 2.7047 8 1 1.1294 3.3991 3.4547 9 6 2.0857 5.2471 2.9367 10 7 2.7702 5.8990 2.0240 11 14 1.6413 6.0846 4.5463 12 1 2.2330 5.3272 5.6783 13 1 2.1740 7.4707 4.5465 14 1 0.1641 6.1214 4.6937 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2426 -0.9704 17 1 0.5472 -2.3475 -0.9323 18 8 2.2010 -2.7391 0.2426 19 6 2.1802 -3.0405 -2.1549 20 7 1.7310 -4.4314 -2.0569 21 6 2.5426 -5.4141 -1.3344 22 6 0.5712 -4.8071 -2.6313 23 8 -0.0587 -4.0153 -3.3000 24 6 0.0569 -6.2111 -2.4427 25 1 0.8321 -6.9352 -2.6931 26 6 -0.4223 -6.4175 -0.9886 27 6 -1.6654 -7.3244 -1.1282 28 6 -1.7905 -7.5581 -2.6501 29 8 -1.1179 -6.4317 -3.2532 30 1 -0.3633 -1.0253 0.0709 31 1 -0.3634 0.5740 0.8525 32 1 -0.3634 0.4512 -0.9233 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9273 -0.8309 35 1 2.5248 3.8008 0.8502 36 1 3.0445 6.8152 2.1857 37 1 3.0797 -0.6611 -1.1757 38 1 1.5611 -0.3873 -2.0629 39 1 3.1653 -2.6771 0.2786 40 1 3.2697 -3.0087 -2.1409 41 1 1.8160 -2.6058 -3.0858 42 1 3.1757 -5.9519 -2.0402 43 1 3.1678 -4.9017 -0.6030 44 1 1.8884 -6.1197 -0.8223 45 1 -0.6943 -5.4635 -0.5372 46 1 0.3476 -6.9130 -0.3973 47 1 -2.5520 -6.8187 -0.7456 48 1 -1.5115 -8.2696 -0.6076 49 1 -1.2986 -8.4889 -2.9328 50 1 -2.8394 -7.5773 -2.9460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734536690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:49 Heat of formation + Delta-G solvation = -144.075461 kcal Electronic energy + Delta-G solvation = -30741.579317 eV Core-core repulsion = 26383.798993 eV Total energy + Delta-G solvation = -4357.780323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83827 -39.20623 -38.58010 -37.62069 -35.90844 -35.14278 -33.78752 -32.59128 -31.28760 -31.16334 -29.76770 -27.93051 -27.32309 -26.36847 -24.90129 -23.88860 -22.68303 -21.93596 -21.02337 -19.78348 -19.09828 -17.84801 -17.80551 -17.12417 -16.81090 -16.25178 -16.19117 -15.74600 -15.49838 -15.31519 -15.22642 -14.73389 -14.56639 -14.44350 -14.13930 -13.76573 -13.63844 -13.59526 -13.33032 -13.20188 -12.89436 -12.82287 -12.26406 -12.10007 -12.05394 -11.97889 -11.72486 -11.61835 -11.47910 -11.38235 -11.21747 -11.20366 -10.90877 -10.82901 -10.44916 -10.41817 -10.34149 -10.18267 -9.85201 -9.43472 -8.87146 -8.37183 -7.93796 -7.78184 -6.38565 -3.79154 2.25674 2.40617 3.22298 3.27519 3.32118 3.54855 3.90408 3.94952 3.98118 4.16367 4.23847 4.37190 4.43479 4.53808 4.63629 4.67212 4.73324 4.83570 4.87751 4.99580 5.05027 5.11263 5.12860 5.22692 5.25977 5.28965 5.30551 5.41927 5.44057 5.50907 5.57829 5.58414 5.75056 5.77648 5.90055 6.00242 6.04685 6.12477 6.29541 6.32316 6.63416 6.97603 7.31501 7.39957 7.58055 7.70895 7.85510 8.09824 8.65845 9.21637 9.58213 10.10749 10.79227 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024492 B = 0.001863 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.942406 B =15023.127657 C =15369.987880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.506 5.506 3 C 0.045 3.955 4 C 0.445 3.555 5 O -0.575 6.575 6 N -0.566 5.566 7 C -0.298 4.298 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.023 3.977 16 C 0.099 3.901 17 H 0.100 0.900 18 O -0.539 6.539 19 C 0.084 3.916 20 N -0.606 5.606 21 C 0.073 3.927 22 C 0.519 3.481 23 O -0.517 6.517 24 C 0.060 3.940 25 H 0.092 0.908 26 C -0.144 4.144 27 C -0.154 4.154 28 C 0.042 3.958 29 O -0.346 6.346 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.013 0.987 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.391 0.609 36 H 0.271 0.729 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.368 0.632 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -26.937 -10.903 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.229 5.229 3 C -0.086 4.086 4 C 0.230 3.770 5 O -0.459 6.459 6 N -0.203 5.203 7 C -0.427 4.427 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.106 4.106 16 C 0.038 3.962 17 H 0.118 0.882 18 O -0.343 6.343 19 C -0.039 4.039 20 N -0.340 5.340 21 C -0.070 4.070 22 C 0.305 3.695 23 O -0.392 6.392 24 C -0.002 4.002 25 H 0.110 0.890 26 C -0.182 4.182 27 C -0.192 4.192 28 C -0.035 4.035 29 O -0.264 6.264 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.031 0.969 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.214 0.786 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.081 0.919 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.602 -26.934 -10.314 28.848 hybrid contribution 0.643 1.194 -0.396 1.412 sum 0.041 -25.740 -10.711 27.880 Atomic orbital electron populations 1.22556 0.86740 1.01962 1.01293 1.61497 1.08683 1.12339 1.40412 1.21883 1.00511 0.89059 0.97162 1.19727 0.85409 0.82906 0.88932 1.90494 1.43700 1.64599 1.47063 1.41859 1.49554 1.10789 1.18067 1.19646 1.32884 0.95442 0.94774 0.87994 1.25253 0.96885 0.96646 0.99216 1.69599 1.38155 1.12251 1.34465 0.85921 0.78890 0.77888 0.81528 1.19915 1.21024 1.19948 1.22781 1.00580 0.94348 0.92911 1.22312 0.99317 0.90711 0.83871 0.88183 1.86668 1.24821 1.84786 1.38037 1.22241 0.99765 0.81268 1.00637 1.47561 1.21848 1.10042 1.54568 1.21995 0.95844 0.92516 0.96629 1.20236 0.80692 0.89242 0.79322 1.90740 1.56468 1.53769 1.38203 1.22838 0.90690 0.94748 0.91880 0.89045 1.22945 0.98328 1.01865 0.95056 1.22957 0.98766 1.00427 0.97043 1.23506 0.98668 0.89470 0.91886 1.89272 1.36505 1.50119 1.50499 0.92185 0.88573 0.96888 0.89549 0.93606 0.77542 0.91881 0.90509 0.94163 0.78611 0.89744 0.88813 0.92661 0.89807 0.90937 0.89767 0.89274 0.90126 0.89983 0.91935 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.96 60.06 0.54 0.93 16 2 N -0.51 -8.65 4.37 -244.36 -1.07 -9.72 16 3 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 4 C 0.44 10.69 7.47 -10.99 -0.08 10.61 16 5 O -0.57 -15.80 13.91 5.55 0.08 -15.72 16 6 N -0.57 -14.52 5.29 -10.97 -0.06 -14.58 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 15 C 0.02 0.29 4.62 -3.82 -0.02 0.27 16 16 C 0.10 1.13 3.08 -26.73 -0.08 1.05 16 17 H 0.10 1.43 6.55 -51.93 -0.34 1.09 16 18 O -0.54 -6.34 12.13 -35.23 -0.43 -6.77 16 19 C 0.08 0.76 5.07 -4.04 -0.02 0.74 16 20 N -0.61 -5.41 2.84 -181.57 -0.52 -5.93 16 21 C 0.07 0.39 9.75 59.85 0.58 0.97 16 22 C 0.52 6.06 6.93 -10.99 -0.08 5.99 16 23 O -0.52 -8.39 16.12 -13.52 -0.22 -8.60 16 24 C 0.06 0.53 2.78 -27.10 -0.08 0.46 16 25 H 0.09 0.58 7.79 -51.93 -0.40 0.17 16 26 C -0.14 -1.01 5.72 -25.16 -0.14 -1.16 16 27 C -0.15 -0.91 7.09 -25.16 -0.18 -1.09 16 28 C 0.04 0.28 7.63 37.93 0.29 0.57 16 29 O -0.35 -3.91 10.92 -54.31 -0.59 -4.51 16 30 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.10 2.04 5.82 -51.92 -0.30 1.74 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 34 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 38 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.37 3.03 9.04 45.56 0.41 3.45 16 40 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 41 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 42 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.40 7.23 -51.93 -0.38 0.02 16 44 H 0.07 0.32 4.75 -51.93 -0.25 0.07 16 45 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 46 H 0.09 0.41 6.65 -51.93 -0.35 0.07 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -36.93 401.17 -7.77 -44.71 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.19 Total: 10.76 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 0.47 Total: 12.10 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.92 Total: -54.27 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.16 Total: -35.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.93 -7.77 -44.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734536690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.368 kcal (2) G-P(sol) polarization free energy of solvation -36.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds