Wall clock time and date at job start Wed Apr 1 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99867 * 2 1 4 4 C 1.50695 * 109.47309 * 66.04896 * 3 2 1 5 5 O 1.21291 * 119.99745 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00212 * 179.97438 * 4 3 2 7 7 C 1.37095 * 119.99990 * 179.97438 * 6 4 3 8 8 H 1.07995 * 120.00239 * 0.02562 * 7 6 4 9 9 C 1.38955 * 119.99756 * 180.02562 * 7 6 4 10 10 N 1.31404 * 120.00305 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47198 * 59.99736 * 11 9 7 13 13 H 1.48497 * 109.46890 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46783 * 299.99755 * 11 9 7 15 15 C 1.46906 * 110.99863 * 236.04855 * 2 1 3 16 16 C 1.52999 * 109.46912 * 293.95141 * 15 2 1 17 17 H 1.08993 * 109.47361 * 60.00092 * 16 15 2 18 18 O 1.42909 * 109.46963 * 299.99829 * 16 15 2 19 19 C 1.53000 * 109.47129 * 180.02562 * 16 15 2 20 20 N 1.46494 * 109.47229 * 184.99964 * 19 16 15 21 21 C 1.46503 * 120.00126 * 269.99836 * 20 19 16 22 22 C 1.34776 * 120.00214 * 89.99908 * 20 19 16 23 23 O 1.21282 * 119.99576 * 4.63338 * 22 20 19 24 24 C 1.50700 * 120.00193 * 184.63627 * 22 20 19 25 25 H 1.08999 * 110.33386 * 308.24566 * 24 22 20 26 26 C 1.54488 * 110.37185 * 70.49655 * 24 22 20 27 27 C 1.54509 * 104.06195 * 142.92179 * 26 24 22 28 28 C 1.54482 * 104.06143 * 359.97438 * 27 26 24 29 29 O 1.44419 * 110.46791 * 185.93125 * 24 22 20 30 30 H 1.09004 * 109.47118 * 183.95749 * 1 2 3 31 31 H 1.09008 * 109.47080 * 303.95085 * 1 2 3 32 32 H 1.08998 * 109.47544 * 63.95789 * 1 2 3 33 33 H 1.09004 * 109.46624 * 186.04868 * 3 2 1 34 34 H 1.08996 * 109.46916 * 306.04525 * 3 2 1 35 35 H 0.97001 * 119.99890 * 359.97438 * 6 4 3 36 36 H 0.96996 * 120.00542 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46888 * 173.95533 * 15 2 1 38 38 H 1.08998 * 109.47480 * 53.95205 * 15 2 1 39 39 H 0.96697 * 114.00517 * 299.99847 * 18 16 15 40 40 H 1.09005 * 109.47194 * 64.99971 * 19 16 15 41 41 H 1.09002 * 109.47091 * 305.00261 * 19 16 15 42 42 H 1.09002 * 109.47394 * 264.34850 * 21 20 19 43 43 H 1.09005 * 109.46973 * 24.34530 * 21 20 19 44 44 H 1.08999 * 109.47595 * 144.34284 * 21 20 19 45 45 H 1.08990 * 110.50864 * 24.27655 * 26 24 22 46 46 H 1.08996 * 110.62441 * 261.62352 * 26 24 22 47 47 H 1.09003 * 110.50990 * 241.35479 * 27 26 24 48 48 H 1.09003 * 110.62810 * 118.70209 * 27 26 24 49 49 H 1.09004 * 110.37315 * 94.85648 * 28 27 26 50 50 H 1.08999 * 110.37060 * 217.18827 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0047 1.4456 2.1407 6 7 2.0189 3.3199 1.5237 7 6 1.6923 3.9347 2.7047 8 1 1.1294 3.3991 3.4547 9 6 2.0857 5.2471 2.9367 10 7 2.7702 5.8990 2.0240 11 14 1.6413 6.0846 4.5463 12 1 2.2330 5.3272 5.6783 13 1 2.1740 7.4707 4.5465 14 1 0.1641 6.1214 4.6937 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2426 -0.9704 17 1 0.5472 -2.3475 -0.9323 18 8 2.2010 -2.7391 0.2426 19 6 2.1802 -3.0405 -2.1549 20 7 1.7310 -4.4314 -2.0569 21 6 2.5426 -5.4141 -1.3344 22 6 0.5712 -4.8071 -2.6313 23 8 -0.0587 -4.0153 -3.3000 24 6 0.0569 -6.2111 -2.4427 25 1 0.8321 -6.9352 -2.6931 26 6 -0.4223 -6.4175 -0.9886 27 6 -1.6654 -7.3244 -1.1282 28 6 -1.7905 -7.5581 -2.6501 29 8 -1.1179 -6.4317 -3.2532 30 1 -0.3633 -1.0253 0.0709 31 1 -0.3634 0.5740 0.8525 32 1 -0.3634 0.4512 -0.9233 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9273 -0.8309 35 1 2.5248 3.8008 0.8502 36 1 3.0445 6.8152 2.1857 37 1 3.0797 -0.6611 -1.1757 38 1 1.5611 -0.3873 -2.0629 39 1 3.1653 -2.6771 0.2786 40 1 3.2697 -3.0087 -2.1409 41 1 1.8160 -2.6058 -3.0858 42 1 3.1757 -5.9519 -2.0402 43 1 3.1678 -4.9017 -0.6030 44 1 1.8884 -6.1197 -0.8223 45 1 -0.6943 -5.4635 -0.5372 46 1 0.3476 -6.9130 -0.3973 47 1 -2.5520 -6.8187 -0.7456 48 1 -1.5115 -8.2696 -0.6076 49 1 -1.2986 -8.4889 -2.9328 50 1 -2.8394 -7.5773 -2.9460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734536690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:48 Heat of formation + Delta-G solvation = -175.074401 kcal Electronic energy + Delta-G solvation = -30742.923532 eV Core-core repulsion = 26383.798993 eV Total energy + Delta-G solvation = -4359.124538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58157 -40.46439 -39.75370 -38.80766 -37.10447 -36.13465 -35.75683 -33.27745 -33.21036 -32.03955 -30.55725 -29.37812 -28.16642 -27.26582 -26.62160 -24.85884 -23.68123 -22.46371 -22.12961 -20.99820 -20.50343 -19.84377 -18.54256 -18.12079 -17.63456 -17.44727 -16.94367 -16.84294 -16.76058 -16.51316 -16.30058 -15.99943 -15.86675 -15.51433 -15.34743 -15.04542 -14.89185 -14.71975 -14.28626 -14.20456 -13.79254 -13.76325 -13.46370 -13.36376 -13.05397 -12.88972 -12.79180 -12.71556 -12.60916 -12.55597 -12.51201 -12.42084 -12.23133 -12.12234 -11.88117 -11.72734 -11.45346 -11.27513 -11.06976 -10.65469 -10.27093 -9.99307 -9.59811 -9.19090 -8.45628 -5.94136 1.39840 1.41266 1.42960 1.52332 1.73757 2.06784 2.28753 2.71346 2.99159 3.20894 3.33920 3.38315 3.58601 3.62401 3.78364 3.85438 3.96957 4.03720 4.09501 4.15980 4.21953 4.29013 4.30501 4.37783 4.39447 4.50770 4.53186 4.60855 4.62603 4.66280 4.72404 4.76936 4.80061 4.86899 4.96152 4.97787 5.05900 5.09608 5.13337 5.41382 5.43990 5.72493 5.86761 6.04144 6.17032 6.27827 6.62208 6.99005 7.06004 7.14193 7.57743 8.14414 8.71522 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024492 B = 0.001863 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.942406 B =15023.127657 C =15369.987880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.522 5.522 3 C 0.057 3.943 4 C 0.441 3.559 5 O -0.615 6.615 6 N -0.575 5.575 7 C -0.333 4.333 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.920 5.920 11 Si 0.993 3.007 12 H -0.271 1.271 13 H -0.270 1.270 14 H -0.274 1.274 15 C 0.025 3.975 16 C 0.111 3.889 17 H 0.064 0.936 18 O -0.554 6.554 19 C 0.089 3.911 20 N -0.600 5.600 21 C 0.064 3.936 22 C 0.506 3.494 23 O -0.578 6.578 24 C 0.059 3.941 25 H 0.124 0.876 26 C -0.140 4.140 27 C -0.151 4.151 28 C 0.035 3.965 29 O -0.389 6.389 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.385 0.615 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.120 0.880 47 H 0.069 0.931 48 H 0.111 0.889 49 H 0.087 0.913 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.736 -28.613 -10.989 30.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.246 5.246 3 C -0.074 4.074 4 C 0.228 3.772 5 O -0.501 6.501 6 N -0.212 5.212 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.194 1.194 14 H -0.199 1.199 15 C -0.104 4.104 16 C 0.050 3.950 17 H 0.082 0.918 18 O -0.361 6.361 19 C -0.035 4.035 20 N -0.332 5.332 21 C -0.077 4.077 22 C 0.295 3.705 23 O -0.457 6.457 24 C -0.001 4.001 25 H 0.142 0.858 26 C -0.178 4.178 27 C -0.188 4.188 28 C -0.041 4.041 29 O -0.308 6.308 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.234 0.766 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.138 0.862 47 H 0.087 0.913 48 H 0.129 0.871 49 H 0.105 0.895 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.550 -28.638 -10.401 30.508 hybrid contribution 0.007 1.643 -0.368 1.684 sum 1.557 -26.995 -10.769 29.105 Atomic orbital electron populations 1.22344 0.87861 1.01524 0.99954 1.61446 1.07945 1.12000 1.43222 1.21774 1.02375 0.89420 0.93814 1.20790 0.83715 0.82241 0.90445 1.90473 1.45073 1.65400 1.49107 1.41922 1.50106 1.11550 1.17644 1.19605 1.34421 0.96441 0.95744 0.90460 1.26027 0.96305 0.96595 1.02391 1.69659 1.38105 1.12651 1.35716 0.84999 0.78529 0.77323 0.77536 1.19664 1.19423 1.19900 1.22909 1.02198 0.94016 0.91240 1.22052 0.97496 0.90592 0.84871 0.91803 1.86637 1.26516 1.84754 1.38173 1.22189 1.01685 0.81118 0.98476 1.47693 1.21284 1.10586 1.53673 1.22296 0.95952 0.92164 0.97260 1.20920 0.80886 0.90090 0.78631 1.90699 1.58349 1.55550 1.41126 1.23031 0.90921 0.93565 0.92620 0.85841 1.22955 0.99750 1.00997 0.94106 1.22978 0.97774 1.01386 0.96699 1.23743 0.98864 0.89220 0.92259 1.89232 1.37767 1.51888 1.51922 0.91817 0.92513 0.95854 0.86496 0.91934 0.77019 0.91323 0.87410 0.93630 0.76609 0.85900 0.90459 0.90303 0.88756 0.89912 0.92702 0.86158 0.91251 0.87051 0.89482 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 8.96 127.69 1.14 2.29 16 2 N -0.52 -17.47 4.37 -927.03 -4.05 -21.52 16 3 C 0.06 2.01 5.45 85.55 0.47 2.48 16 4 C 0.44 21.47 7.47 87.66 0.66 22.13 16 5 O -0.61 -34.94 13.91 -3.06 -0.04 -34.98 16 6 N -0.57 -29.96 5.29 -307.00 -1.62 -31.58 16 7 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 9 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 10 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 11 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.02 0.57 4.62 86.30 0.40 0.97 16 16 C 0.11 2.44 3.08 30.59 0.09 2.53 16 17 H 0.06 1.89 6.55 -2.39 -0.02 1.87 16 18 O -0.55 -12.07 12.13 -148.98 -1.81 -13.88 16 19 C 0.09 1.46 5.07 86.38 0.44 1.90 16 20 N -0.60 -9.83 2.84 -846.74 -2.40 -12.23 16 21 C 0.06 0.48 9.75 127.77 1.25 1.72 16 22 C 0.51 11.88 6.93 87.66 0.61 12.49 16 23 O -0.58 -19.78 16.12 15.21 0.25 -19.53 16 24 C 0.06 1.00 2.78 30.35 0.08 1.08 16 25 H 0.12 1.22 7.79 -2.39 -0.02 1.20 16 26 C -0.14 -1.79 5.72 31.61 0.18 -1.61 16 27 C -0.15 -1.56 7.09 31.61 0.22 -1.34 16 28 C 0.04 0.44 7.63 72.49 0.55 1.00 16 29 O -0.39 -8.85 10.92 -130.74 -1.43 -10.28 16 30 H 0.06 2.23 6.47 -2.38 -0.02 2.21 16 31 H 0.06 2.52 5.82 -2.38 -0.01 2.51 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 3.43 7.93 -2.38 -0.02 3.41 16 34 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 36 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.11 1.85 7.93 -2.39 -0.02 1.83 16 38 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 39 H 0.38 5.18 9.04 -74.06 -0.67 4.51 16 40 H 0.12 1.07 8.07 -2.38 -0.02 1.05 16 41 H 0.08 1.58 7.36 -2.39 -0.02 1.56 16 42 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.09 0.54 7.23 -2.38 -0.02 0.53 16 44 H 0.08 0.45 4.75 -2.39 -0.01 0.44 16 45 H 0.05 1.03 7.87 -2.39 -0.02 1.01 16 46 H 0.12 0.73 6.65 -2.39 -0.02 0.71 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -85.15 401.17 -1.85 -87.00 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.43 Total: 34.23 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 7.37 Total: 27.02 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -7.79 Total: -115.12 kcal Atomic # 8 Polarization: -75.64 SS G_CDS: -3.03 Total: -78.67 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -85.15 -1.85 -87.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734536690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.073 kcal (2) G-P(sol) polarization free energy of solvation -85.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds