Wall clock time and date at job start Wed Apr 1 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 110.99956 * 2 1 4 4 C 1.50701 * 109.46899 * 66.04343 * 3 2 1 5 5 O 1.21296 * 120.00229 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99956 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00033 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00147 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00005 * 180.02562 * 7 6 4 10 10 N 1.31424 * 119.99923 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00361 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46759 * 59.99617 * 11 9 7 13 13 H 1.48491 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46896 * 300.00266 * 11 9 7 15 15 C 1.46895 * 111.00477 * 236.04788 * 2 1 3 16 16 C 1.52998 * 109.47538 * 200.00414 * 15 2 1 17 17 H 1.08994 * 109.47377 * 300.97829 * 16 15 2 18 18 O 1.42908 * 109.46866 * 60.97573 * 16 15 2 19 19 C 1.53003 * 109.47410 * 180.96986 * 16 15 2 20 20 N 1.46494 * 109.47151 * 179.97438 * 19 16 15 21 21 C 1.46498 * 120.00387 * 270.00626 * 20 19 16 22 22 C 1.34779 * 119.99675 * 90.00320 * 20 19 16 23 23 O 1.21280 * 120.00156 * 355.11067 * 22 20 19 24 24 C 1.50699 * 120.00233 * 175.38348 * 22 20 19 25 25 H 1.09002 * 110.27351 * 314.83820 * 24 22 20 26 26 C 1.54942 * 110.30963 * 76.92548 * 24 22 20 27 27 C 1.55422 * 100.89281 * 155.29007 * 26 24 22 28 28 C 1.54376 * 102.30757 * 325.99367 * 27 26 24 29 29 O 1.43239 * 107.59341 * 21.28512 * 28 27 26 30 30 H 1.08999 * 109.46764 * 189.01854 * 1 2 3 31 31 H 1.09000 * 109.47264 * 309.01537 * 1 2 3 32 32 H 1.08999 * 109.47471 * 69.01705 * 1 2 3 33 33 H 1.08997 * 109.46822 * 186.04377 * 3 2 1 34 34 H 1.09001 * 109.46678 * 306.04798 * 3 2 1 35 35 H 0.96998 * 119.99717 * 0.02562 * 6 4 3 36 36 H 0.97003 * 119.99694 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47538 * 80.00304 * 15 2 1 38 38 H 1.09007 * 109.47027 * 320.00464 * 15 2 1 39 39 H 0.96693 * 114.00310 * 60.00244 * 18 16 15 40 40 H 1.09001 * 109.46368 * 60.00573 * 19 16 15 41 41 H 1.08989 * 109.47117 * 300.00525 * 19 16 15 42 42 H 1.08996 * 109.46935 * 274.68170 * 21 20 19 43 43 H 1.08998 * 109.47182 * 34.68539 * 21 20 19 44 44 H 1.09001 * 109.46902 * 154.68708 * 21 20 19 45 45 H 1.09001 * 111.12656 * 273.27998 * 26 24 22 46 46 H 1.08998 * 111.12539 * 37.44715 * 26 24 22 47 47 H 1.08993 * 110.88493 * 207.75535 * 27 26 24 48 48 H 1.09005 * 110.93030 * 84.25469 * 27 26 24 49 49 H 1.09004 * 109.83143 * 261.76857 * 28 27 26 50 50 H 1.09001 * 109.83091 * 140.79771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0053 1.4453 2.1412 6 7 2.0187 3.3199 1.5238 7 6 1.6930 3.9344 2.7052 8 1 1.1307 3.3986 3.4555 9 6 2.0863 5.2467 2.9372 10 7 2.7701 5.8990 2.0240 11 14 1.6418 6.0844 4.5467 12 1 2.2335 5.3269 5.6787 13 1 2.1745 7.4704 4.5469 14 1 0.1646 6.1211 4.6941 15 6 1.9955 -0.7659 -1.1375 16 6 3.4437 -1.1698 -0.8539 17 1 4.0449 -0.2756 -0.6902 18 8 3.4886 -1.9941 0.3126 19 6 3.9999 -1.9468 -2.0489 20 7 5.3867 -2.3330 -1.7776 21 6 6.4838 -1.4405 -2.1597 22 6 5.6532 -3.5094 -1.1764 23 8 4.7442 -4.2076 -0.7801 24 6 7.0810 -3.9544 -0.9909 25 1 7.6483 -3.7957 -1.9080 26 6 7.7351 -3.1870 0.1855 27 6 8.8491 -4.1863 0.6049 28 6 8.1858 -5.5529 0.3301 29 8 7.1264 -5.3387 -0.6099 30 1 -0.3633 -1.0150 0.1611 31 1 -0.3634 0.6469 0.7985 32 1 -0.3634 0.3680 -0.9595 33 1 3.0797 1.3444 -0.1082 34 1 1.5610 1.9274 -0.8309 35 1 2.5241 3.8011 0.8500 36 1 3.0450 6.8151 2.1862 37 1 1.9592 -0.1516 -2.0372 38 1 1.3907 -1.6609 -1.2841 39 1 2.9743 -2.8095 0.2380 40 1 3.9657 -1.3180 -2.9387 41 1 3.3986 -2.8410 -2.2126 42 1 6.7526 -1.6202 -3.2006 43 1 6.1679 -0.4043 -2.0397 44 1 7.3474 -1.6331 -1.5230 45 1 8.1599 -2.2410 -0.1503 46 1 7.0235 -3.0301 0.9962 47 1 9.0904 -4.0778 1.6623 48 1 9.7400 -4.0567 -0.0097 49 1 7.7813 -5.9606 1.2565 50 1 8.9188 -6.2419 -0.0896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734536692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:56 Heat of formation + Delta-G solvation = -143.551801 kcal Electronic energy + Delta-G solvation = -31125.847095 eV Core-core repulsion = 26768.089480 eV Total energy + Delta-G solvation = -4357.757616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73252 -39.13492 -38.54262 -37.35469 -35.79612 -35.13487 -33.78097 -32.56829 -31.20966 -31.09015 -29.70222 -27.99512 -27.46103 -26.26958 -24.70712 -23.70444 -22.32457 -22.09481 -21.17266 -19.60154 -19.11265 -18.02931 -17.82193 -17.00157 -16.70912 -16.20124 -15.91536 -15.75601 -15.59942 -15.26598 -14.92982 -14.62280 -14.49614 -14.32952 -13.84457 -13.73959 -13.61751 -13.51569 -13.40184 -13.24028 -12.85598 -12.63142 -12.23848 -12.07423 -12.03144 -11.96983 -11.70860 -11.59273 -11.47143 -11.33980 -11.29607 -11.25488 -10.96448 -10.77746 -10.42111 -10.26062 -10.18534 -10.07615 -9.57345 -9.43315 -8.76627 -8.34948 -7.93498 -7.77886 -6.38956 -3.79291 2.39677 2.51360 3.22114 3.27116 3.32048 3.59021 3.93653 3.96530 4.00153 4.19493 4.25749 4.40948 4.57588 4.65846 4.69502 4.72126 4.74605 4.87847 4.96738 5.08523 5.12908 5.17061 5.19950 5.26104 5.30162 5.31322 5.36252 5.42675 5.44801 5.52106 5.57678 5.69912 5.71626 5.75986 5.96997 6.02830 6.05523 6.17041 6.32421 6.54899 6.56535 7.10583 7.31839 7.42559 7.57985 7.96015 8.05307 8.09925 8.65776 9.21622 9.58035 10.10759 10.78980 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002336 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.405875 B =11981.454344 C =13045.428924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.446 3.554 5 O -0.574 6.574 6 N -0.567 5.567 7 C -0.297 4.297 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.905 5.905 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.024 3.976 16 C 0.098 3.902 17 H 0.095 0.905 18 O -0.534 6.534 19 C 0.084 3.916 20 N -0.609 5.609 21 C 0.068 3.932 22 C 0.521 3.479 23 O -0.513 6.513 24 C 0.067 3.933 25 H 0.091 0.909 26 C -0.147 4.147 27 C -0.154 4.154 28 C 0.049 3.951 29 O -0.356 6.356 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.011 0.989 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.391 0.609 36 H 0.271 0.729 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.373 0.627 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 -15.983 -13.376 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.230 5.230 3 C -0.085 4.085 4 C 0.231 3.769 5 O -0.457 6.457 6 N -0.204 5.204 7 C -0.426 4.426 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.546 5.546 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.105 4.105 16 C 0.037 3.963 17 H 0.113 0.887 18 O -0.338 6.338 19 C -0.039 4.039 20 N -0.344 5.344 21 C -0.075 4.075 22 C 0.308 3.692 23 O -0.386 6.386 24 C 0.005 3.995 25 H 0.109 0.891 26 C -0.184 4.184 27 C -0.192 4.192 28 C -0.027 4.027 29 O -0.274 6.274 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.224 0.776 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.220 0.780 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.299 -16.499 -12.002 23.823 hybrid contribution -0.203 1.138 -0.710 1.357 sum 12.096 -15.360 -12.712 23.321 Atomic orbital electron populations 1.22518 0.86597 1.02651 1.00507 1.61425 1.08295 1.12496 1.40822 1.21894 1.00519 0.89072 0.97063 1.19728 0.85337 0.82846 0.88950 1.90498 1.43706 1.64547 1.46990 1.41855 1.49656 1.10819 1.18030 1.19646 1.32833 0.95404 0.94732 0.88010 1.25243 0.96910 0.96635 0.99202 1.69610 1.38307 1.12254 1.34453 0.85928 0.78892 0.77885 0.81578 1.19898 1.21020 1.19946 1.22794 0.96611 0.98744 0.92378 1.22248 0.94710 0.93763 0.85604 0.88700 1.86618 1.74224 1.35963 1.37019 1.22242 0.82332 1.00889 0.98455 1.47550 1.06977 1.19046 1.60841 1.22009 0.90060 0.94939 1.00472 1.20316 0.90755 0.80784 0.77392 1.90670 1.46994 1.54057 1.46912 1.22815 0.93793 0.83729 0.99115 0.89096 1.23346 0.98198 0.98966 0.97916 1.23150 0.98429 0.94183 1.03401 1.23208 0.89252 0.97046 0.93242 1.88510 1.53760 1.23032 1.62144 0.92132 0.88707 0.97018 0.89738 0.93715 0.77599 0.91913 0.94204 0.90542 0.77953 0.89639 0.89546 0.92348 0.90541 0.90558 0.88805 0.89023 0.89374 0.90177 0.90851 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.15 60.06 0.55 0.97 16 2 N -0.51 -8.70 4.31 -244.37 -1.05 -9.76 16 3 C 0.05 0.84 5.27 -4.97 -0.03 0.81 16 4 C 0.45 10.78 7.42 -10.98 -0.08 10.69 16 5 O -0.57 -15.89 13.96 5.54 0.08 -15.82 16 6 N -0.57 -14.55 5.29 -10.96 -0.06 -14.60 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 10 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.02 0.30 4.65 -3.83 -0.02 0.29 16 16 C 0.10 1.21 3.31 -26.73 -0.09 1.12 16 17 H 0.10 1.24 6.78 -51.93 -0.35 0.89 16 18 O -0.53 -8.41 11.93 -48.86 -0.58 -9.00 16 19 C 0.08 0.81 5.16 -4.04 -0.02 0.79 16 20 N -0.61 -5.88 2.83 -181.58 -0.51 -6.39 16 21 C 0.07 0.42 10.04 59.85 0.60 1.02 16 22 C 0.52 6.33 6.58 -10.98 -0.07 6.26 16 23 O -0.51 -8.19 14.70 -21.33 -0.31 -8.51 16 24 C 0.07 0.64 2.91 -26.86 -0.08 0.56 16 25 H 0.09 0.65 7.67 -51.93 -0.40 0.25 16 26 C -0.15 -1.15 6.00 -24.42 -0.15 -1.29 16 27 C -0.15 -0.95 7.02 -24.72 -0.17 -1.12 16 28 C 0.05 0.40 7.80 37.88 0.30 0.69 16 29 O -0.36 -4.23 10.64 -54.20 -0.58 -4.80 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.93 5.79 -51.93 -0.30 1.63 16 32 H 0.01 0.17 8.13 -51.93 -0.42 -0.25 16 33 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 34 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.04 0.43 7.99 -51.93 -0.42 0.02 16 38 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 39 H 0.37 5.47 8.31 45.56 0.38 5.85 16 40 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.09 0.89 7.50 -51.94 -0.39 0.50 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 44 H 0.08 0.38 4.43 -51.93 -0.23 0.15 16 45 H 0.09 0.52 6.30 -51.93 -0.33 0.20 16 46 H 0.09 0.93 8.05 -51.93 -0.42 0.52 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -36.51 400.09 -8.05 -44.56 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.26 Total: 13.25 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 0.50 Total: 12.76 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.90 Total: -54.73 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.40 Total: -38.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.51 -8.05 -44.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734536692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.994 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds