Wall clock time and date at job start Wed Apr 1 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 110.99956 * 2 1 4 4 C 1.50701 * 109.46899 * 66.04343 * 3 2 1 5 5 O 1.21296 * 120.00229 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99956 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00033 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00147 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00005 * 180.02562 * 7 6 4 10 10 N 1.31424 * 119.99923 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00361 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46759 * 59.99617 * 11 9 7 13 13 H 1.48491 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46896 * 300.00266 * 11 9 7 15 15 C 1.46895 * 111.00477 * 236.04788 * 2 1 3 16 16 C 1.52998 * 109.47538 * 200.00414 * 15 2 1 17 17 H 1.08994 * 109.47377 * 300.97829 * 16 15 2 18 18 O 1.42908 * 109.46866 * 60.97573 * 16 15 2 19 19 C 1.53003 * 109.47410 * 180.96986 * 16 15 2 20 20 N 1.46494 * 109.47151 * 179.97438 * 19 16 15 21 21 C 1.46498 * 120.00387 * 270.00626 * 20 19 16 22 22 C 1.34779 * 119.99675 * 90.00320 * 20 19 16 23 23 O 1.21280 * 120.00156 * 355.11067 * 22 20 19 24 24 C 1.50699 * 120.00233 * 175.38348 * 22 20 19 25 25 H 1.09002 * 110.27351 * 314.83820 * 24 22 20 26 26 C 1.54942 * 110.30963 * 76.92548 * 24 22 20 27 27 C 1.55422 * 100.89281 * 155.29007 * 26 24 22 28 28 C 1.54376 * 102.30757 * 325.99367 * 27 26 24 29 29 O 1.43239 * 107.59341 * 21.28512 * 28 27 26 30 30 H 1.08999 * 109.46764 * 189.01854 * 1 2 3 31 31 H 1.09000 * 109.47264 * 309.01537 * 1 2 3 32 32 H 1.08999 * 109.47471 * 69.01705 * 1 2 3 33 33 H 1.08997 * 109.46822 * 186.04377 * 3 2 1 34 34 H 1.09001 * 109.46678 * 306.04798 * 3 2 1 35 35 H 0.96998 * 119.99717 * 0.02562 * 6 4 3 36 36 H 0.97003 * 119.99694 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47538 * 80.00304 * 15 2 1 38 38 H 1.09007 * 109.47027 * 320.00464 * 15 2 1 39 39 H 0.96693 * 114.00310 * 60.00244 * 18 16 15 40 40 H 1.09001 * 109.46368 * 60.00573 * 19 16 15 41 41 H 1.08989 * 109.47117 * 300.00525 * 19 16 15 42 42 H 1.08996 * 109.46935 * 274.68170 * 21 20 19 43 43 H 1.08998 * 109.47182 * 34.68539 * 21 20 19 44 44 H 1.09001 * 109.46902 * 154.68708 * 21 20 19 45 45 H 1.09001 * 111.12656 * 273.27998 * 26 24 22 46 46 H 1.08998 * 111.12539 * 37.44715 * 26 24 22 47 47 H 1.08993 * 110.88493 * 207.75535 * 27 26 24 48 48 H 1.09005 * 110.93030 * 84.25469 * 27 26 24 49 49 H 1.09004 * 109.83143 * 261.76857 * 28 27 26 50 50 H 1.09001 * 109.83091 * 140.79771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0053 1.4453 2.1412 6 7 2.0187 3.3199 1.5238 7 6 1.6930 3.9344 2.7052 8 1 1.1307 3.3986 3.4555 9 6 2.0863 5.2467 2.9372 10 7 2.7701 5.8990 2.0240 11 14 1.6418 6.0844 4.5467 12 1 2.2335 5.3269 5.6787 13 1 2.1745 7.4704 4.5469 14 1 0.1646 6.1211 4.6941 15 6 1.9955 -0.7659 -1.1375 16 6 3.4437 -1.1698 -0.8539 17 1 4.0449 -0.2756 -0.6902 18 8 3.4886 -1.9941 0.3126 19 6 3.9999 -1.9468 -2.0489 20 7 5.3867 -2.3330 -1.7776 21 6 6.4838 -1.4405 -2.1597 22 6 5.6532 -3.5094 -1.1764 23 8 4.7442 -4.2076 -0.7801 24 6 7.0810 -3.9544 -0.9909 25 1 7.6483 -3.7957 -1.9080 26 6 7.7351 -3.1870 0.1855 27 6 8.8491 -4.1863 0.6049 28 6 8.1858 -5.5529 0.3301 29 8 7.1264 -5.3387 -0.6099 30 1 -0.3633 -1.0150 0.1611 31 1 -0.3634 0.6469 0.7985 32 1 -0.3634 0.3680 -0.9595 33 1 3.0797 1.3444 -0.1082 34 1 1.5610 1.9274 -0.8309 35 1 2.5241 3.8011 0.8500 36 1 3.0450 6.8151 2.1862 37 1 1.9592 -0.1516 -2.0372 38 1 1.3907 -1.6609 -1.2841 39 1 2.9743 -2.8095 0.2380 40 1 3.9657 -1.3180 -2.9387 41 1 3.3986 -2.8410 -2.2126 42 1 6.7526 -1.6202 -3.2006 43 1 6.1679 -0.4043 -2.0397 44 1 7.3474 -1.6331 -1.5230 45 1 8.1599 -2.2410 -0.1503 46 1 7.0235 -3.0301 0.9962 47 1 9.0904 -4.0778 1.6623 48 1 9.7400 -4.0567 -0.0097 49 1 7.7813 -5.9606 1.2565 50 1 8.9188 -6.2419 -0.0896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734536692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:56 Heat of formation + Delta-G solvation = -173.274434 kcal Electronic energy + Delta-G solvation = -31127.135965 eV Core-core repulsion = 26768.089480 eV Total energy + Delta-G solvation = -4359.046486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51317 -40.46565 -39.71450 -38.61393 -36.96753 -36.20309 -35.77094 -33.27184 -33.24098 -31.94973 -30.52384 -29.54681 -28.19054 -27.15669 -26.56932 -24.64829 -23.32417 -22.67817 -22.33490 -20.93673 -20.37774 -19.85238 -18.77032 -18.04667 -17.70322 -17.40658 -16.95734 -16.73097 -16.63315 -16.42860 -16.35697 -15.95972 -15.80978 -15.36332 -15.23539 -15.10270 -14.89526 -14.37495 -14.29882 -14.05713 -13.84488 -13.78002 -13.44233 -13.34975 -13.05109 -12.92766 -12.85904 -12.72359 -12.62268 -12.60824 -12.48745 -12.42529 -12.14754 -12.12992 -11.87890 -11.85088 -11.45603 -11.15830 -10.99533 -10.38362 -10.25360 -9.99147 -9.55464 -9.09563 -8.46006 -5.94263 1.39296 1.40863 1.51712 1.55543 1.80409 2.06751 2.28914 2.77165 2.95422 3.20634 3.34022 3.38044 3.56483 3.69270 3.79833 3.86560 4.02963 4.08049 4.10088 4.17225 4.23095 4.28758 4.33516 4.39086 4.40493 4.52471 4.57444 4.61855 4.64831 4.69170 4.76539 4.77380 4.78906 4.82829 4.94649 5.03059 5.09015 5.16664 5.17011 5.41175 5.47878 5.88959 5.90123 6.09025 6.23590 6.36281 6.62292 6.90703 7.14212 7.19162 7.57532 8.14665 8.71319 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002336 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.405875 B =11981.454344 C =13045.428924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.534 5.534 3 C 0.060 3.940 4 C 0.440 3.560 5 O -0.616 6.616 6 N -0.575 5.575 7 C -0.333 4.333 8 H 0.075 0.925 9 C -0.012 4.012 10 N -0.920 5.920 11 Si 0.991 3.009 12 H -0.274 1.274 13 H -0.268 1.268 14 H -0.272 1.272 15 C 0.029 3.971 16 C 0.098 3.902 17 H 0.089 0.911 18 O -0.562 6.562 19 C 0.090 3.910 20 N -0.606 5.606 21 C 0.059 3.941 22 C 0.508 3.492 23 O -0.565 6.565 24 C 0.065 3.935 25 H 0.123 0.877 26 C -0.144 4.144 27 C -0.144 4.144 28 C 0.039 3.961 29 O -0.393 6.393 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.278 0.722 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.373 0.627 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.062 0.938 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.663 -15.097 -15.433 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.258 5.258 3 C -0.071 4.071 4 C 0.228 3.772 5 O -0.501 6.501 6 N -0.212 5.212 7 C -0.462 4.462 8 H 0.093 0.907 9 C -0.212 4.212 10 N -0.561 5.561 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.192 1.192 14 H -0.198 1.198 15 C -0.100 4.100 16 C 0.037 3.963 17 H 0.107 0.893 18 O -0.367 6.367 19 C -0.034 4.034 20 N -0.340 5.340 21 C -0.082 4.082 22 C 0.296 3.704 23 O -0.443 6.443 24 C 0.004 3.996 25 H 0.140 0.860 26 C -0.182 4.182 27 C -0.182 4.182 28 C -0.037 4.037 29 O -0.312 6.312 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.221 0.779 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.139 0.861 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.125 0.875 49 H 0.080 0.920 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.254 -15.579 -14.110 25.397 hybrid contribution -0.802 0.832 -0.098 1.159 sum 13.452 -14.747 -14.208 24.501 Atomic orbital electron populations 1.22371 0.86759 1.02455 1.00137 1.61345 1.08490 1.12078 1.43932 1.21740 1.01774 0.89644 0.93925 1.20837 0.83663 0.82193 0.90551 1.90474 1.45197 1.65376 1.49103 1.41912 1.50161 1.11570 1.17592 1.19587 1.34475 0.96426 0.95722 0.90652 1.25997 0.96295 0.96538 1.02331 1.69663 1.38125 1.12679 1.35639 0.85026 0.78619 0.77378 0.77538 1.19941 1.19240 1.19765 1.22843 0.96496 0.98893 0.91727 1.22364 0.94776 0.93398 0.85727 0.89317 1.86582 1.74527 1.36354 1.39255 1.22192 0.82296 1.00627 0.98270 1.47687 1.07919 1.18711 1.59638 1.22303 0.89257 0.94495 1.02186 1.20955 0.91488 0.81107 0.76807 1.90635 1.48562 1.55813 1.49294 1.23020 0.92565 0.83084 1.00899 0.86013 1.23337 0.97974 1.00520 0.96361 1.23163 0.98485 0.92103 1.04403 1.23407 0.89008 0.98752 0.92486 1.88467 1.55296 1.24471 1.62982 0.91021 0.92988 0.94533 0.87865 0.91169 0.77008 0.91279 0.91160 0.89424 0.77946 0.86064 0.90533 0.89824 0.89814 0.89513 0.86102 0.92297 0.88707 0.87458 0.91996 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.15 127.69 1.17 2.18 16 2 N -0.53 -17.80 4.31 -927.05 -4.00 -21.79 16 3 C 0.06 2.13 5.27 85.56 0.45 2.58 16 4 C 0.44 21.64 7.42 87.66 0.65 22.29 16 5 O -0.62 -35.45 13.96 -3.08 -0.04 -35.49 16 6 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 10 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 11 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.03 0.65 4.65 86.30 0.40 1.06 16 16 C 0.10 2.28 3.31 30.59 0.10 2.38 16 17 H 0.09 2.16 6.78 -2.39 -0.02 2.14 16 18 O -0.56 -18.04 11.93 -135.94 -1.62 -19.66 16 19 C 0.09 1.53 5.16 86.38 0.45 1.97 16 20 N -0.61 -10.61 2.83 -846.79 -2.39 -13.01 16 21 C 0.06 0.53 10.04 127.77 1.28 1.81 16 22 C 0.51 12.23 6.58 87.66 0.58 12.80 16 23 O -0.57 -18.82 14.70 22.68 0.33 -18.49 16 24 C 0.06 1.17 2.91 30.51 0.09 1.26 16 25 H 0.12 1.39 7.67 -2.39 -0.02 1.37 16 26 C -0.14 -2.07 6.00 32.09 0.19 -1.88 16 27 C -0.14 -1.50 7.02 31.89 0.22 -1.28 16 28 C 0.04 0.62 7.80 72.45 0.56 1.18 16 29 O -0.39 -9.34 10.64 -130.84 -1.39 -10.73 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.17 5.79 -2.39 -0.01 2.16 16 32 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 33 H 0.10 3.25 6.64 -2.39 -0.02 3.24 16 34 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 35 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 36 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.07 1.22 7.99 -2.39 -0.02 1.20 16 38 H 0.09 1.83 7.94 -2.38 -0.02 1.81 16 39 H 0.37 11.51 8.31 -74.06 -0.62 10.89 16 40 H 0.12 1.20 8.07 -2.39 -0.02 1.18 16 41 H 0.08 1.50 7.50 -2.39 -0.02 1.48 16 42 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.08 0.67 8.11 -2.39 -0.02 0.65 16 44 H 0.09 0.58 4.43 -2.39 -0.01 0.57 16 45 H 0.12 1.01 6.30 -2.39 -0.02 0.99 16 46 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -83.72 400.09 -1.37 -85.10 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.38 Total: 41.86 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 7.43 Total: 27.76 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -7.73 Total: -115.85 kcal Atomic # 8 Polarization: -81.65 SS G_CDS: -2.72 Total: -84.37 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -83.72 -1.37 -85.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734536692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.176 kcal (2) G-P(sol) polarization free energy of solvation -83.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds