Wall clock time and date at job start Wed Apr 1 2020 02:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99978 * 2 1 4 4 H 1.09004 * 109.46698 * 34.81461 * 3 2 1 5 5 C 1.50700 * 109.46847 * 154.81095 * 3 2 1 6 6 O 1.21281 * 119.99795 * 207.84178 * 5 3 2 7 7 N 1.34772 * 120.00183 * 27.83956 * 5 3 2 8 8 C 1.46505 * 119.99972 * 356.51456 * 7 5 3 9 9 C 1.46507 * 120.00166 * 176.51791 * 7 5 3 10 10 C 1.52995 * 109.47093 * 90.00112 * 9 7 5 11 11 N 1.46896 * 109.47045 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00031 * 179.97438 * 11 10 9 13 13 C 1.50711 * 109.47078 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99888 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99849 * 179.72727 * 13 12 11 16 16 C 1.37095 * 119.99906 * 180.27121 * 15 13 12 17 17 H 1.07997 * 120.00216 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99837 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00537 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99675 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47017 * 90.00401 * 20 18 16 22 22 H 1.48503 * 109.47229 * 210.00248 * 20 18 16 23 23 H 1.48497 * 109.47362 * 330.00363 * 20 18 16 24 24 C 1.52990 * 109.47282 * 274.80991 * 3 2 1 25 25 H 1.09004 * 110.45738 * 51.55934 * 24 3 2 26 26 C 1.54512 * 110.51093 * 174.16624 * 24 3 2 27 27 C 1.54480 * 104.06451 * 118.64888 * 26 24 3 28 28 O 1.44424 * 104.80397 * 23.97527 * 27 26 24 29 29 C 1.44433 * 105.27770 * 319.49269 * 28 27 26 30 30 H 1.09007 * 109.46979 * 64.99695 * 1 2 3 31 31 H 1.09004 * 109.47095 * 184.98892 * 1 2 3 32 32 H 1.08996 * 109.47299 * 304.99803 * 1 2 3 33 33 H 1.08999 * 109.47337 * 275.56238 * 8 7 5 34 34 H 1.09001 * 109.47080 * 35.56609 * 8 7 5 35 35 H 1.09006 * 109.47040 * 155.56541 * 8 7 5 36 36 H 1.08995 * 109.46705 * 330.00143 * 9 7 5 37 37 H 1.09006 * 109.46860 * 210.00009 * 9 7 5 38 38 H 1.09001 * 109.47558 * 60.00085 * 10 9 7 39 39 H 1.09006 * 109.47183 * 299.99699 * 10 9 7 40 40 H 1.00906 * 110.99876 * 56.04590 * 11 10 9 41 41 H 1.08997 * 109.47272 * 59.99966 * 12 11 10 42 42 H 1.09000 * 109.47235 * 299.99885 * 12 11 10 43 43 H 0.97007 * 120.00074 * 0.27199 * 15 13 12 44 44 H 0.96991 * 120.00173 * 179.97438 * 19 18 16 45 45 H 1.09006 * 110.51125 * 237.29011 * 26 24 3 46 46 H 1.09000 * 110.50967 * 359.85974 * 26 24 3 47 47 H 1.08993 * 110.37831 * 142.80963 * 27 26 24 48 48 H 1.09001 * 110.36753 * 265.04021 * 27 26 24 49 49 H 1.08996 * 110.37325 * 281.67946 * 29 28 27 50 50 H 1.08994 * 110.37601 * 159.34079 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3872 1.9805 0.5868 5 6 3.3891 1.2414 0.6047 6 8 3.8534 2.2144 1.1602 7 7 4.1062 0.1028 0.5283 8 6 3.5166 -1.0952 -0.0747 9 6 5.4753 0.0631 1.0483 10 6 5.4499 -0.3536 2.5202 11 7 6.8226 -0.3928 3.0417 12 6 6.8373 -0.7895 4.4561 13 6 8.2592 -0.8179 4.9551 14 8 9.1705 -0.5359 4.2060 15 7 8.5175 -1.1517 6.2350 16 6 9.8105 -1.1722 6.6904 17 1 10.6219 -0.9204 6.0237 18 6 10.0768 -1.5159 8.0102 19 7 9.0895 -1.8218 8.8216 20 14 11.8384 -1.5430 8.6309 21 1 12.1946 -0.2052 9.1680 22 1 11.9688 -2.5589 9.7062 23 1 12.7523 -1.8865 7.5120 24 6 2.1072 1.8206 -1.4373 25 1 1.1434 1.7334 -1.9391 26 6 2.5964 3.2861 -1.4554 27 6 3.9244 3.2289 -2.2425 28 8 3.8170 2.0444 -3.0619 29 6 3.1974 1.0512 -2.2157 30 1 -0.3633 0.4344 -0.9314 31 1 -0.3633 -1.0238 0.0894 32 1 -0.3634 0.5894 0.8418 33 1 2.9301 -1.6277 0.6740 34 1 2.8705 -0.8046 -0.9031 35 1 4.3106 -1.7446 -0.4436 36 1 5.9270 1.0509 0.9580 37 1 6.0602 -0.6576 0.4767 38 1 4.9982 -1.3415 2.6105 39 1 4.8650 0.3671 3.0918 40 1 7.2848 0.4946 2.9105 41 1 6.3955 -1.7804 4.5601 42 1 6.2618 -0.0718 5.0407 43 1 7.7887 -1.3776 6.8339 44 1 9.2754 -2.0621 9.7427 45 1 1.8756 3.9231 -1.9682 46 1 2.7668 3.6443 -0.4401 47 1 4.0330 4.1145 -2.8684 48 1 4.7680 3.1432 -1.5576 49 1 3.9294 0.6297 -1.5268 50 1 2.7477 0.2642 -2.8209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753216519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:19 Heat of formation + Delta-G solvation = -163.252786 kcal Electronic energy + Delta-G solvation = -30947.932222 eV Core-core repulsion = 26589.320307 eV Total energy + Delta-G solvation = -4358.611915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08480 -40.21422 -39.80634 -38.66834 -37.58214 -36.26886 -35.71388 -33.90112 -33.29710 -31.43283 -30.27623 -28.66104 -28.15894 -27.34037 -26.29060 -25.53858 -23.96992 -23.28879 -22.05471 -21.16274 -20.33265 -19.91476 -18.59304 -18.10269 -17.82308 -17.70135 -17.25422 -17.03001 -16.59567 -16.50578 -16.28194 -16.05435 -15.81293 -15.60231 -15.45857 -15.20381 -14.90251 -14.62426 -14.42069 -13.95608 -13.93074 -13.84609 -13.71299 -13.52803 -13.35682 -13.11980 -12.93434 -12.81721 -12.72803 -12.43459 -12.38707 -12.28345 -12.12429 -12.08609 -11.96764 -11.79726 -11.52645 -11.08320 -10.83537 -10.52608 -10.40948 -10.04048 -9.72946 -9.46029 -8.48207 -5.97353 1.35337 1.37303 1.41139 1.54332 1.85003 2.01745 2.28667 2.49888 2.93805 2.94780 3.18460 3.35355 3.46537 3.53370 3.76894 3.79025 3.95722 4.01216 4.08261 4.20546 4.25543 4.27931 4.36940 4.38668 4.44205 4.47846 4.54048 4.54780 4.63234 4.71480 4.74320 4.77025 4.78119 4.84933 4.90718 4.96425 4.97781 5.02276 5.18328 5.39106 5.41304 5.74408 5.80571 5.92388 6.03593 6.25122 6.29566 6.57474 6.97427 7.10209 7.52947 8.08034 8.69266 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.001865 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.918038 B =15007.029956 C =15583.898613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.373 6.373 3 C 0.089 3.911 4 H 0.104 0.896 5 C 0.516 3.484 6 O -0.571 6.571 7 N -0.599 5.599 8 C 0.076 3.924 9 C 0.120 3.880 10 C 0.058 3.942 11 N -0.675 5.675 12 C 0.066 3.934 13 C 0.438 3.562 14 O -0.622 6.622 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.132 4.132 25 H 0.124 0.876 26 C -0.153 4.153 27 C 0.041 3.959 28 O -0.394 6.394 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.343 0.657 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.040 0.960 49 H 0.065 0.935 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.544 3.727 -21.530 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.292 6.292 3 C 0.028 3.972 4 H 0.122 0.878 5 C 0.304 3.696 6 O -0.451 6.451 7 N -0.331 5.331 8 C -0.065 4.065 9 C -0.003 4.003 10 C -0.072 4.072 11 N -0.307 5.307 12 C -0.066 4.066 13 C 0.225 3.775 14 O -0.508 6.508 15 N -0.209 5.209 16 C -0.464 4.464 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.818 3.182 21 H -0.196 1.196 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.151 4.151 25 H 0.142 0.858 26 C -0.190 4.190 27 C -0.036 4.036 28 O -0.313 6.313 29 C -0.045 4.045 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.161 0.839 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.230 0.770 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.096 0.904 47 H 0.124 0.876 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.414 3.490 -21.988 32.309 hybrid contribution 0.076 0.962 1.706 1.960 sum -23.337 4.452 -20.282 31.238 Atomic orbital electron populations 1.23138 0.79466 1.04442 1.01280 1.88284 1.21668 1.24294 1.94925 1.22266 0.91031 0.87630 0.96268 0.87821 1.20881 0.87618 0.82460 0.78630 1.90742 1.72287 1.37176 1.44882 1.47985 1.14211 1.12370 1.58488 1.22324 0.98876 0.85525 0.99795 1.21344 0.82656 1.02673 0.93664 1.22225 0.88426 1.01247 0.95351 1.60053 1.16800 1.37634 1.16233 1.21526 0.92661 1.03020 0.89421 1.20787 0.91826 0.82534 0.82325 1.90488 1.48443 1.55161 1.56757 1.41927 1.08655 1.60527 1.09821 1.19682 0.85255 1.45711 0.95780 0.90261 1.26081 1.03818 0.96012 0.95455 1.69671 1.33289 1.46201 1.06943 0.84900 0.76932 0.78445 0.77887 1.19634 1.19398 1.19720 1.23002 1.02430 0.95293 0.94363 0.85798 1.23032 0.97662 0.96277 1.02060 1.23458 0.96983 0.89263 0.93900 1.89104 1.82183 1.23155 1.36834 1.24041 0.94161 0.92221 0.94067 0.92139 0.87744 0.93492 0.91433 0.87750 0.90156 0.91778 0.88011 0.89580 0.96245 0.83875 0.87382 0.92191 0.76951 0.91235 0.88089 0.90432 0.87574 0.94131 0.91666 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.83 113.37 1.23 1.29 16 2 O -0.37 -3.89 6.00 -148.98 -0.89 -4.78 16 3 C 0.09 1.23 2.13 29.84 0.06 1.29 16 4 H 0.10 1.33 7.78 -2.39 -0.02 1.31 16 5 C 0.52 11.18 5.53 87.66 0.48 11.66 16 6 O -0.57 -16.92 15.60 -3.03 -0.05 -16.97 16 7 N -0.60 -11.63 2.00 -846.73 -1.69 -13.32 16 8 C 0.08 0.97 8.02 127.77 1.02 2.00 16 9 C 0.12 2.80 5.68 86.38 0.49 3.29 16 10 C 0.06 1.52 6.01 86.30 0.52 2.04 16 11 N -0.67 -22.79 6.13 -517.92 -3.17 -25.96 16 12 C 0.07 2.41 6.17 85.56 0.53 2.94 16 13 C 0.44 21.63 7.82 87.66 0.69 22.31 16 14 O -0.62 -35.56 15.78 -3.06 -0.05 -35.61 16 15 N -0.57 -30.22 5.29 -306.98 -1.62 -31.84 16 16 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 17 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -50.37 13.05 21.66 0.28 -50.08 16 20 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 C -0.13 -1.55 3.11 -9.78 -0.03 -1.58 16 25 H 0.12 0.86 7.50 -2.39 -0.02 0.84 16 26 C -0.15 -2.13 6.35 31.61 0.20 -1.93 16 27 C 0.04 0.72 7.63 72.49 0.55 1.27 16 28 O -0.39 -7.92 11.65 -148.98 -1.74 -9.65 16 29 C 0.03 0.47 5.44 72.49 0.39 0.86 16 30 H 0.06 0.14 7.54 -2.38 -0.02 0.12 16 31 H 0.10 0.29 8.14 -2.38 -0.02 0.28 16 32 H 0.05 0.25 7.97 -2.39 -0.02 0.23 16 33 H 0.07 0.84 7.77 -2.39 -0.02 0.82 16 34 H 0.10 1.10 3.74 -2.39 -0.01 1.09 16 35 H 0.08 0.87 7.83 -2.38 -0.02 0.85 16 36 H 0.06 1.75 7.47 -2.39 -0.02 1.74 16 37 H 0.10 2.15 7.86 -2.38 -0.02 2.13 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 39 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.34 12.47 8.43 -89.69 -0.76 11.71 16 41 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.40 19.85 7.90 -92.70 -0.73 19.12 16 44 H 0.28 14.21 8.31 -92.72 -0.77 13.44 16 45 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.08 1.35 6.59 -2.39 -0.02 1.34 16 47 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 1.12 4.06 -2.39 -0.01 1.11 16 50 H 0.11 1.21 8.04 -2.39 -0.02 1.19 16 Total: -1.00 -75.05 397.35 0.01 -75.04 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.52 Total: 41.03 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 7.42 Total: 26.55 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.20 Total: -121.20 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: -2.72 Total: -67.01 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -75.05 0.01 -75.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753216519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.212 kcal (2) G-P(sol) polarization free energy of solvation -75.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds