Wall clock time and date at job start Wed Apr 1 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00040 * 2 1 4 4 C 1.52994 * 109.47282 * 293.95525 * 3 2 1 5 5 N 1.46496 * 109.47253 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99896 * 270.00133 * 5 4 3 7 7 C 1.34777 * 120.00271 * 89.99668 * 5 4 3 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 5 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 5 4 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 5 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.43251 * 328.90983 * 11 10 9 13 13 C 1.54808 * 110.48919 * 206.21901 * 11 10 9 14 14 C 1.55000 * 102.09288 * 220.44498 * 13 11 10 15 15 O 1.44373 * 103.49022 * 37.02186 * 14 13 11 16 16 C 1.43749 * 106.97579 * 319.94150 * 15 14 13 17 17 C 1.46898 * 111.00039 * 123.95867 * 2 1 3 18 18 C 1.50702 * 109.47550 * 66.04303 * 17 2 1 19 19 O 1.21289 * 119.99603 * 0.02562 * 18 17 2 20 20 N 1.34772 * 120.00156 * 180.02562 * 18 17 2 21 21 C 1.37103 * 119.99877 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99599 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99835 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99858 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99582 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47509 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47392 * 119.99985 * 25 23 21 28 28 H 1.48504 * 109.46898 * 239.99462 * 25 23 21 29 29 H 1.08997 * 109.47037 * 59.99747 * 1 2 3 30 30 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46977 * 299.99558 * 1 2 3 32 32 H 1.09001 * 109.47164 * 173.95141 * 3 2 1 33 33 H 1.08997 * 109.47117 * 53.96040 * 3 2 1 34 34 H 1.09000 * 109.46983 * 60.00130 * 4 3 2 35 35 H 1.09004 * 109.47116 * 299.99702 * 4 3 2 36 36 H 1.08999 * 109.47333 * 269.99341 * 6 5 4 37 37 H 1.08997 * 109.47024 * 30.00155 * 6 5 4 38 38 H 1.09000 * 109.46875 * 149.99915 * 6 5 4 39 39 H 1.09002 * 109.47152 * 60.00245 * 9 7 5 40 40 H 1.09001 * 109.46980 * 300.00345 * 9 7 5 41 41 H 1.09001 * 110.90376 * 338.64130 * 13 11 10 42 42 H 1.08999 * 110.91212 * 102.24045 * 13 11 10 43 43 H 1.09001 * 110.61238 * 278.51934 * 14 13 11 44 44 H 1.08994 * 110.61668 * 155.52512 * 14 13 11 45 45 H 1.09001 * 109.88002 * 267.08901 * 16 15 14 46 46 H 1.09000 * 110.00302 * 146.01106 * 16 15 14 47 47 H 1.08997 * 109.47340 * 186.04448 * 17 2 1 48 48 H 1.09003 * 109.47388 * 306.04130 * 17 2 1 49 49 H 0.96993 * 120.00123 * 359.97438 * 20 18 17 50 50 H 0.97007 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 7 2.1570 3.4249 -1.3184 6 6 1.3376 4.5246 -0.8032 7 6 3.3944 3.6713 -1.7925 8 8 4.0725 2.7609 -2.2194 9 6 3.9352 5.0779 -1.7922 10 8 5.2550 5.0809 -2.3401 11 6 5.8627 6.3735 -2.3852 12 1 5.1056 7.1452 -2.5242 13 6 6.9188 6.4366 -3.5152 14 6 8.0616 7.2428 -2.8470 15 8 8.0483 6.7766 -1.4807 16 6 6.6697 6.6352 -1.0988 17 6 1.9955 -0.7661 1.1375 18 6 1.6369 -2.2205 0.9728 19 8 1.0054 -2.5833 0.0029 20 7 2.0180 -3.1181 1.9031 21 6 1.6923 -4.4413 1.7529 22 1 1.1299 -4.7643 0.8893 23 6 2.0847 -5.3666 2.7124 24 7 2.7685 -4.9734 3.7634 25 14 1.6415 -7.1696 2.5074 26 1 0.8751 -7.3510 1.2484 27 1 2.8836 -7.9817 2.4526 28 1 0.8129 -7.6096 3.6585 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3444 0.1083 33 1 1.5612 1.9273 0.8310 34 1 0.5472 2.0845 -1.4264 35 1 2.0659 1.5016 -2.1491 36 1 0.7448 4.9471 -1.6145 37 1 0.6732 4.1490 -0.0250 38 1 1.9853 5.2961 -0.3867 39 1 3.9648 5.4556 -0.7702 40 1 3.2898 5.7154 -2.3966 41 1 7.2563 5.4368 -3.7884 42 1 6.5272 6.9645 -4.3848 43 1 7.8531 8.3118 -2.8899 44 1 9.0175 7.0179 -3.3200 45 1 6.3212 7.5516 -0.6226 46 1 6.5570 5.7954 -0.4132 47 1 3.0797 -0.6612 1.1756 48 1 1.5612 -0.3874 2.0628 49 1 2.5234 -2.8280 2.6785 50 1 3.0421 -5.6194 4.4334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753853207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:06 Heat of formation + Delta-G solvation = -135.928874 kcal Electronic energy + Delta-G solvation = -29772.309771 eV Core-core repulsion = 25414.882710 eV Total energy + Delta-G solvation = -4357.427061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47053 -39.81465 -38.58543 -37.47405 -36.63745 -35.46070 -33.81057 -31.99419 -31.22196 -30.57258 -29.29519 -28.00992 -27.69768 -26.79992 -25.16443 -23.84138 -23.18145 -21.82555 -21.22568 -19.60825 -19.08752 -17.96404 -17.79774 -17.50632 -16.88008 -16.62015 -16.29540 -16.03837 -15.85249 -15.33565 -15.16824 -14.81021 -14.69311 -14.48302 -13.98839 -13.87559 -13.46649 -13.40890 -13.34815 -13.19189 -13.03838 -12.90217 -12.68056 -12.49266 -12.29541 -12.07579 -11.97759 -11.90205 -11.48159 -11.27536 -11.26405 -11.25111 -10.91765 -10.80925 -10.43498 -10.31094 -10.18939 -9.98669 -9.91663 -9.45033 -9.01600 -8.39258 -7.94143 -7.82631 -6.38022 -3.78591 2.30112 2.35859 3.19218 3.26584 3.29624 3.37068 3.45379 3.94212 3.94843 4.07501 4.18272 4.31770 4.34218 4.41753 4.51968 4.63374 4.65146 4.74847 4.81754 4.88374 4.96270 5.01166 5.12019 5.18969 5.19345 5.23002 5.23396 5.29072 5.36519 5.45409 5.54530 5.65840 5.69061 5.82013 5.90576 5.99038 6.04979 6.22111 6.31356 6.33089 6.54765 6.58920 7.05095 7.27375 7.41302 7.59158 7.93363 8.10662 8.65994 9.22133 9.58709 10.10629 10.79916 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.001719 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.676414 B =16281.603680 C =17368.033938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.043 3.957 4 C 0.120 3.880 5 N -0.617 5.617 6 C 0.075 3.925 7 C 0.511 3.489 8 O -0.505 6.505 9 C 0.043 3.957 10 O -0.346 6.346 11 C 0.054 3.946 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.047 3.953 15 O -0.371 6.371 16 C 0.023 3.977 17 C 0.048 3.952 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 30.956 -8.564 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.087 4.087 4 C -0.002 4.002 5 N -0.353 5.353 6 C -0.069 4.069 7 C 0.297 3.703 8 O -0.378 6.378 9 C -0.036 4.036 10 O -0.264 6.264 11 C -0.005 4.005 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.030 4.030 15 O -0.290 6.290 16 C -0.054 4.054 17 C -0.084 4.084 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.244 29.651 -9.666 31.267 hybrid contribution -0.571 0.108 1.400 1.516 sum 1.674 29.759 -8.266 30.931 Atomic orbital electron populations 1.22603 0.86846 1.04645 0.98718 1.61444 1.08541 1.10902 1.43103 1.22434 1.00932 0.89065 0.96220 1.21497 0.98932 0.80362 0.99400 1.47787 1.15423 1.08981 1.63111 1.21865 0.95829 0.89586 0.99586 1.20190 0.81425 0.90372 0.78346 1.90798 1.56724 1.45954 1.44328 1.22349 0.85883 0.95666 0.99751 1.88147 1.27513 1.27743 1.82991 1.23631 0.95618 0.85816 0.95422 0.90294 1.23234 0.95116 1.03187 0.97515 1.23566 0.99668 0.97485 0.82274 1.88931 1.24006 1.87508 1.28558 1.23767 0.82518 1.01937 0.97210 1.21856 1.00780 0.94140 0.91591 1.19715 0.85397 0.86620 0.85195 1.90480 1.43922 1.80139 1.31540 1.41871 1.49484 1.07375 1.21466 1.19756 1.32816 0.82277 1.07833 0.87837 1.25263 0.96878 1.00565 0.95338 1.69626 1.38222 1.35634 1.10907 0.85797 0.78189 0.81966 0.78369 1.19221 1.20762 1.20835 0.92151 0.88446 0.96821 0.90551 0.95251 0.90117 0.88520 0.92192 0.90490 0.91225 0.90201 0.90143 0.88630 0.89321 0.91904 0.88313 0.91731 0.88722 0.89365 0.93514 0.77508 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.07 0.54 0.85 16 2 N -0.52 -8.94 4.50 -244.38 -1.10 -10.04 16 3 C 0.04 0.59 5.28 -3.83 -0.02 0.57 16 4 C 0.12 1.44 5.33 -4.05 -0.02 1.42 16 5 N -0.62 -5.96 2.87 -181.57 -0.52 -6.48 16 6 C 0.07 0.37 10.24 59.85 0.61 0.99 16 7 C 0.51 6.02 7.75 -10.98 -0.09 5.94 16 8 O -0.50 -8.68 16.08 -14.35 -0.23 -8.91 16 9 C 0.04 0.34 4.83 36.01 0.17 0.51 16 10 O -0.35 -3.60 9.49 -55.14 -0.52 -4.12 16 11 C 0.05 0.37 3.51 -25.21 -0.09 0.28 16 12 H 0.08 0.33 7.86 -51.93 -0.41 -0.08 16 13 C -0.15 -0.98 6.90 -24.72 -0.17 -1.16 16 14 C 0.05 0.29 7.72 38.21 0.29 0.58 16 15 O -0.37 -3.56 11.52 -35.23 -0.41 -3.97 16 16 C 0.02 0.17 7.52 37.73 0.28 0.46 16 17 C 0.05 0.90 5.45 -4.98 -0.03 0.87 16 18 C 0.45 10.81 7.47 -10.99 -0.08 10.73 16 19 O -0.58 -15.81 13.91 5.55 0.08 -15.73 16 20 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 30 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 34 H 0.08 0.82 6.48 -51.93 -0.34 0.48 16 35 H 0.10 1.44 7.42 -51.93 -0.39 1.05 16 36 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 38 H 0.07 0.21 6.44 -51.93 -0.33 -0.13 16 39 H 0.08 0.41 7.40 -51.93 -0.38 0.03 16 40 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.80 7.97 -51.93 -0.41 0.38 16 47 H 0.09 1.56 7.93 -51.93 -0.41 1.15 16 48 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 49 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 408.15 15.07 6.15 6.15 Total: -1.00 -37.05 408.15 -7.94 -44.99 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.20 Total: 6.79 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 1.17 Total: 13.93 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.95 Total: -55.51 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.08 Total: -32.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.05 -7.94 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753853207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.943 kcal (2) G-P(sol) polarization free energy of solvation -37.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds