Wall clock time and date at job start Wed Apr 1 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00218 * 2 1 4 4 C 1.52996 * 109.46714 * 293.94916 * 3 2 1 5 5 N 1.46502 * 109.47041 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00062 * 90.00341 * 5 4 3 7 7 C 1.34779 * 119.99726 * 270.00095 * 5 4 3 8 8 O 1.21279 * 120.00410 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99541 * 179.97438 * 7 5 4 10 10 O 1.42907 * 109.46820 * 180.02562 * 9 7 5 11 11 C 1.42896 * 113.99916 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.45803 * 27.39383 * 11 10 9 13 13 C 1.54508 * 110.51560 * 150.00124 * 11 10 9 14 14 C 1.54480 * 104.06570 * 118.64048 * 13 11 10 15 15 O 1.44421 * 104.80103 * 23.97842 * 14 13 11 16 16 C 1.44426 * 105.27853 * 319.49025 * 15 14 13 17 17 C 1.46904 * 111.00036 * 123.95113 * 2 1 3 18 18 C 1.50700 * 109.47217 * 66.04445 * 17 2 1 19 19 O 1.21289 * 119.99595 * 0.02562 * 18 17 2 20 20 N 1.34773 * 120.00357 * 180.02562 * 18 17 2 21 21 C 1.37091 * 120.00426 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99857 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00310 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00122 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46825 * 60.00353 * 25 23 21 27 27 H 1.48502 * 109.46873 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47079 * 300.00315 * 25 23 21 29 29 H 1.09007 * 109.46705 * 60.00035 * 1 2 3 30 30 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47229 * 300.00348 * 1 2 3 32 32 H 1.09000 * 109.46677 * 173.95271 * 3 2 1 33 33 H 1.08999 * 109.46957 * 53.94732 * 3 2 1 34 34 H 1.09002 * 109.47038 * 59.99967 * 4 3 2 35 35 H 1.09006 * 109.47661 * 300.00187 * 4 3 2 36 36 H 1.09002 * 109.47391 * 89.99876 * 6 5 4 37 37 H 1.09001 * 109.46813 * 329.99933 * 6 5 4 38 38 H 1.09004 * 109.47041 * 210.00060 * 6 5 4 39 39 H 1.08996 * 109.47057 * 299.99739 * 9 7 5 40 40 H 1.08996 * 109.47084 * 60.00703 * 9 7 5 41 41 H 1.09000 * 110.51301 * 237.29014 * 13 11 10 42 42 H 1.09009 * 110.50838 * 359.97438 * 13 11 10 43 43 H 1.08997 * 110.36809 * 142.81362 * 14 13 11 44 44 H 1.09004 * 110.36949 * 265.15163 * 14 13 11 45 45 H 1.09002 * 110.36861 * 281.67682 * 16 15 14 46 46 H 1.09002 * 110.37453 * 159.34269 * 16 15 14 47 47 H 1.09002 * 109.47270 * 186.04823 * 17 2 1 48 48 H 1.09000 * 109.46692 * 306.04719 * 17 2 1 49 49 H 0.97010 * 119.99609 * 359.97438 * 20 18 17 50 50 H 0.96998 * 120.00441 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0573 -1.3183 5 7 2.1571 3.4248 -1.3186 6 6 3.5021 3.6926 -1.8340 7 6 1.4032 4.4366 -0.8448 8 8 0.2896 4.2151 -0.4186 9 6 1.9441 5.8432 -0.8446 10 8 0.9659 6.7296 -0.2971 11 6 1.3807 8.0963 -0.2517 12 1 2.1096 8.2995 -1.0362 13 6 0.1624 9.0367 -0.3877 14 6 0.1554 9.8357 0.9344 15 8 1.5207 9.7864 1.4025 16 6 1.9657 8.4384 1.1366 17 6 1.9954 -0.7659 1.1377 18 6 1.6369 -2.2204 0.9730 19 8 1.0054 -2.5832 0.0032 20 7 2.0179 -3.1179 1.9034 21 6 1.6913 -4.4409 1.7540 22 1 1.1290 -4.7641 0.8904 23 6 2.0846 -5.3663 2.7129 24 7 2.7693 -4.9733 3.7635 25 14 1.6402 -7.1692 2.5088 26 1 2.2320 -7.6852 1.2484 27 1 2.1719 -7.9433 3.6592 28 1 0.1630 -7.3120 2.4570 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.0797 1.3443 0.1083 33 1 1.5610 1.9274 0.8308 34 1 0.5473 2.0844 -1.4266 35 1 2.0659 1.5014 -2.1493 36 1 3.4460 3.9085 -2.9010 37 1 4.1335 2.8188 -1.6728 38 1 3.9274 4.5496 -1.3117 39 1 2.8499 5.8841 -0.2397 40 1 2.1756 6.1436 -1.8665 41 1 0.2900 9.7065 -1.2381 42 1 -0.7564 8.4591 -0.4901 43 1 -0.1465 10.8672 0.7527 44 1 -0.5111 9.3662 1.6580 45 1 1.5770 7.7546 1.8912 46 1 3.0546 8.3964 1.1103 47 1 3.0797 -0.6610 1.1757 48 1 1.5610 -0.3871 2.0628 49 1 2.5233 -2.8277 2.6789 50 1 3.0435 -5.6192 4.4331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753853208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:09 Heat of formation + Delta-G solvation = -137.428529 kcal Electronic energy + Delta-G solvation = -29755.069561 eV Core-core repulsion = 25397.577470 eV Total energy + Delta-G solvation = -4357.492091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49447 -39.84057 -38.58573 -37.50885 -36.62547 -35.49346 -33.82814 -31.98798 -31.23986 -30.56294 -29.29279 -28.02192 -27.57819 -26.88327 -25.11315 -23.82663 -23.40530 -21.71205 -21.25388 -19.63902 -19.09926 -17.94081 -17.80855 -17.51647 -16.77305 -16.65883 -16.46284 -16.02433 -15.63255 -15.34550 -15.25844 -14.84689 -14.60039 -14.46377 -14.14475 -13.87135 -13.69107 -13.42832 -13.31159 -13.26391 -13.07653 -12.81224 -12.66021 -12.56804 -12.18907 -12.06629 -11.99194 -11.80468 -11.49243 -11.29767 -11.27710 -11.19904 -10.89132 -10.77508 -10.43381 -10.42537 -10.19623 -10.07589 -10.00260 -9.44752 -9.03076 -8.40634 -7.95854 -7.83740 -6.39612 -3.80400 2.26926 2.31506 3.19200 3.21581 3.27047 3.31604 3.59050 3.93035 3.95612 4.06947 4.14577 4.28036 4.31416 4.37261 4.52070 4.63178 4.71183 4.76573 4.78107 4.91857 4.97822 5.12428 5.13946 5.19874 5.22120 5.23931 5.28122 5.28830 5.36610 5.42878 5.49598 5.70072 5.74273 5.81403 5.89698 5.98946 6.08227 6.13337 6.22519 6.31248 6.57699 6.62680 7.03262 7.28273 7.39972 7.56980 7.88264 8.08402 8.64258 9.20190 9.56752 10.08872 10.78112 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.001593 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.929928 B =17567.744742 C =17980.628985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.041 3.959 4 C 0.120 3.880 5 N -0.615 5.615 6 C 0.073 3.927 7 C 0.512 3.488 8 O -0.513 6.513 9 C 0.044 3.956 10 O -0.349 6.349 11 C 0.054 3.946 12 H 0.080 0.920 13 C -0.156 4.156 14 C 0.045 3.955 15 O -0.372 6.372 16 C 0.023 3.977 17 C 0.047 3.953 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 29.054 -8.723 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.088 4.088 4 C -0.003 4.003 5 N -0.351 5.351 6 C -0.070 4.070 7 C 0.298 3.702 8 O -0.387 6.387 9 C -0.036 4.036 10 O -0.267 6.267 11 C -0.005 4.005 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.032 4.032 15 O -0.291 6.291 16 C -0.055 4.055 17 C -0.084 4.084 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.281 28.456 -9.246 30.007 hybrid contribution 0.271 -0.438 1.041 1.161 sum 2.552 28.018 -8.205 29.306 Atomic orbital electron populations 1.22584 0.86519 1.04336 0.99294 1.61537 1.08955 1.10730 1.42817 1.22432 1.00113 0.89350 0.96945 1.21512 1.01038 0.79416 0.98305 1.47796 1.16623 1.07716 1.62936 1.21898 0.83024 1.02831 0.99222 1.20203 0.85708 0.86125 0.78172 1.90762 1.19255 1.84164 1.44485 1.22358 0.92392 0.89121 0.99716 1.88104 1.39464 1.15878 1.83244 1.23595 0.96981 0.82226 0.97678 0.90187 1.23038 0.99418 0.97776 0.99115 1.23442 0.84418 1.01242 0.94082 1.89150 1.27541 1.28869 1.83505 1.23970 1.00412 0.84899 0.96197 1.21856 1.00527 0.94154 0.91902 1.19716 0.85425 0.86596 0.85240 1.90480 1.43873 1.80128 1.31634 1.41858 1.49476 1.07356 1.21441 1.19653 1.32975 0.82307 1.07932 0.87952 1.25255 0.96827 1.00555 0.95303 1.69604 1.38065 1.35847 1.10885 0.85915 0.78899 0.81709 0.77669 1.19905 1.21013 1.19938 0.92032 0.88555 0.96538 0.90955 0.94740 0.89401 0.89143 0.92110 0.90099 0.91251 0.90117 0.90029 0.89592 0.88664 0.88654 0.91654 0.90787 0.88660 0.89500 0.93462 0.77509 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.06 0.54 0.90 16 2 N -0.52 -8.87 4.50 -244.36 -1.10 -9.97 16 3 C 0.04 0.56 5.28 -3.82 -0.02 0.54 16 4 C 0.12 1.41 5.33 -4.04 -0.02 1.39 16 5 N -0.61 -5.84 2.87 -181.57 -0.52 -6.36 16 6 C 0.07 0.38 10.24 59.85 0.61 0.99 16 7 C 0.51 5.80 7.75 -10.98 -0.09 5.71 16 8 O -0.51 -8.32 16.08 -14.35 -0.23 -8.55 16 9 C 0.04 0.33 4.81 36.01 0.17 0.50 16 10 O -0.35 -3.40 9.51 -55.14 -0.52 -3.92 16 11 C 0.05 0.37 3.61 -25.16 -0.09 0.27 16 12 H 0.08 0.37 7.82 -51.93 -0.41 -0.03 16 13 C -0.16 -0.96 6.90 -25.16 -0.17 -1.14 16 14 C 0.04 0.29 7.63 37.93 0.29 0.58 16 15 O -0.37 -3.25 11.65 -35.23 -0.41 -3.66 16 16 C 0.02 0.16 7.38 37.93 0.28 0.44 16 17 C 0.05 0.87 5.45 -4.97 -0.03 0.84 16 18 C 0.44 10.62 7.47 -10.99 -0.08 10.54 16 19 O -0.58 -15.61 13.91 5.55 0.08 -15.54 16 20 N -0.56 -14.44 5.29 -10.97 -0.06 -14.50 16 21 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.97 6.47 -51.92 -0.34 0.63 16 30 H 0.10 1.99 5.83 -51.93 -0.30 1.69 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.09 1.21 5.83 -51.93 -0.30 0.91 16 35 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 38 H 0.07 0.21 6.44 -51.93 -0.33 -0.13 16 39 H 0.08 0.40 7.40 -51.93 -0.38 0.02 16 40 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.67 8.00 -51.92 -0.42 0.25 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 48 H 0.05 0.83 8.12 -51.93 -0.42 0.40 16 49 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -35.82 408.14 -7.96 -43.78 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.20 Total: 6.86 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 1.15 Total: 13.53 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.95 Total: -54.79 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.09 Total: -31.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.82 -7.96 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753853208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.649 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds