Wall clock time and date at job start Wed Apr 1 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00218 * 2 1 4 4 C 1.52996 * 109.46714 * 293.94916 * 3 2 1 5 5 N 1.46502 * 109.47041 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00062 * 90.00341 * 5 4 3 7 7 C 1.34779 * 119.99726 * 270.00095 * 5 4 3 8 8 O 1.21279 * 120.00410 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99541 * 179.97438 * 7 5 4 10 10 O 1.42907 * 109.46820 * 180.02562 * 9 7 5 11 11 C 1.42896 * 113.99916 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.45803 * 27.39383 * 11 10 9 13 13 C 1.54508 * 110.51560 * 150.00124 * 11 10 9 14 14 C 1.54480 * 104.06570 * 118.64048 * 13 11 10 15 15 O 1.44421 * 104.80103 * 23.97842 * 14 13 11 16 16 C 1.44426 * 105.27853 * 319.49025 * 15 14 13 17 17 C 1.46904 * 111.00036 * 123.95113 * 2 1 3 18 18 C 1.50700 * 109.47217 * 66.04445 * 17 2 1 19 19 O 1.21289 * 119.99595 * 0.02562 * 18 17 2 20 20 N 1.34773 * 120.00357 * 180.02562 * 18 17 2 21 21 C 1.37091 * 120.00426 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99857 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00310 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00122 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46825 * 60.00353 * 25 23 21 27 27 H 1.48502 * 109.46873 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47079 * 300.00315 * 25 23 21 29 29 H 1.09007 * 109.46705 * 60.00035 * 1 2 3 30 30 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47229 * 300.00348 * 1 2 3 32 32 H 1.09000 * 109.46677 * 173.95271 * 3 2 1 33 33 H 1.08999 * 109.46957 * 53.94732 * 3 2 1 34 34 H 1.09002 * 109.47038 * 59.99967 * 4 3 2 35 35 H 1.09006 * 109.47661 * 300.00187 * 4 3 2 36 36 H 1.09002 * 109.47391 * 89.99876 * 6 5 4 37 37 H 1.09001 * 109.46813 * 329.99933 * 6 5 4 38 38 H 1.09004 * 109.47041 * 210.00060 * 6 5 4 39 39 H 1.08996 * 109.47057 * 299.99739 * 9 7 5 40 40 H 1.08996 * 109.47084 * 60.00703 * 9 7 5 41 41 H 1.09000 * 110.51301 * 237.29014 * 13 11 10 42 42 H 1.09009 * 110.50838 * 359.97438 * 13 11 10 43 43 H 1.08997 * 110.36809 * 142.81362 * 14 13 11 44 44 H 1.09004 * 110.36949 * 265.15163 * 14 13 11 45 45 H 1.09002 * 110.36861 * 281.67682 * 16 15 14 46 46 H 1.09002 * 110.37453 * 159.34269 * 16 15 14 47 47 H 1.09002 * 109.47270 * 186.04823 * 17 2 1 48 48 H 1.09000 * 109.46692 * 306.04719 * 17 2 1 49 49 H 0.97010 * 119.99609 * 359.97438 * 20 18 17 50 50 H 0.96998 * 120.00441 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0573 -1.3183 5 7 2.1571 3.4248 -1.3186 6 6 3.5021 3.6926 -1.8340 7 6 1.4032 4.4366 -0.8448 8 8 0.2896 4.2151 -0.4186 9 6 1.9441 5.8432 -0.8446 10 8 0.9659 6.7296 -0.2971 11 6 1.3807 8.0963 -0.2517 12 1 2.1096 8.2995 -1.0362 13 6 0.1624 9.0367 -0.3877 14 6 0.1554 9.8357 0.9344 15 8 1.5207 9.7864 1.4025 16 6 1.9657 8.4384 1.1366 17 6 1.9954 -0.7659 1.1377 18 6 1.6369 -2.2204 0.9730 19 8 1.0054 -2.5832 0.0032 20 7 2.0179 -3.1179 1.9034 21 6 1.6913 -4.4409 1.7540 22 1 1.1290 -4.7641 0.8904 23 6 2.0846 -5.3663 2.7129 24 7 2.7693 -4.9733 3.7635 25 14 1.6402 -7.1692 2.5088 26 1 2.2320 -7.6852 1.2484 27 1 2.1719 -7.9433 3.6592 28 1 0.1630 -7.3120 2.4570 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.0797 1.3443 0.1083 33 1 1.5610 1.9274 0.8308 34 1 0.5473 2.0844 -1.4266 35 1 2.0659 1.5014 -2.1493 36 1 3.4460 3.9085 -2.9010 37 1 4.1335 2.8188 -1.6728 38 1 3.9274 4.5496 -1.3117 39 1 2.8499 5.8841 -0.2397 40 1 2.1756 6.1436 -1.8665 41 1 0.2900 9.7065 -1.2381 42 1 -0.7564 8.4591 -0.4901 43 1 -0.1465 10.8672 0.7527 44 1 -0.5111 9.3662 1.6580 45 1 1.5770 7.7546 1.8912 46 1 3.0546 8.3964 1.1103 47 1 3.0797 -0.6610 1.1757 48 1 1.5610 -0.3871 2.0628 49 1 2.5233 -2.8277 2.6789 50 1 3.0435 -5.6192 4.4331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753853208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:08 Heat of formation + Delta-G solvation = -165.328339 kcal Electronic energy + Delta-G solvation = -29756.279388 eV Core-core repulsion = 25397.577470 eV Total energy + Delta-G solvation = -4358.701917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22889 -40.53209 -40.28321 -38.34868 -37.80430 -36.50245 -35.82406 -33.28630 -32.54914 -31.53180 -29.87792 -29.29790 -28.46047 -27.68279 -26.78305 -25.16569 -23.93553 -22.48826 -22.20491 -21.02049 -20.37537 -19.84719 -18.55095 -18.15348 -17.90394 -17.34907 -17.33438 -17.13483 -16.61743 -16.56682 -16.27064 -16.15750 -15.78526 -15.64190 -15.51617 -15.17442 -14.88941 -14.51540 -14.16975 -14.07601 -13.92088 -13.77219 -13.65783 -13.45281 -13.25029 -13.18931 -13.03283 -12.90386 -12.65105 -12.61230 -12.55502 -12.41756 -12.28950 -12.12087 -11.87335 -11.75179 -11.45353 -10.96977 -10.86996 -10.60832 -10.34092 -10.00161 -9.75867 -9.31356 -8.45793 -5.94591 1.40274 1.41952 1.49280 1.53063 1.61402 2.05155 2.28922 2.57939 2.86939 3.11534 3.20626 3.39517 3.46176 3.58594 3.78861 3.91197 3.94192 4.06669 4.10687 4.20465 4.22387 4.24882 4.30540 4.32825 4.38096 4.45490 4.49553 4.56385 4.59742 4.66603 4.70294 4.73003 4.78409 4.78706 4.88436 4.91030 4.98415 4.99461 5.14715 5.39599 5.41726 5.63412 5.81959 6.01254 6.05644 6.12061 6.35150 6.61051 7.10104 7.13318 7.56450 8.12331 8.71386 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.001593 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.929928 B =17567.744742 C =17980.628985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.527 5.527 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.609 5.609 6 C 0.064 3.936 7 C 0.502 3.498 8 O -0.576 6.576 9 C 0.047 3.953 10 O -0.383 6.383 11 C 0.053 3.947 12 H 0.110 0.890 13 C -0.156 4.156 14 C 0.040 3.960 15 O -0.391 6.391 16 C 0.020 3.980 17 C 0.058 3.942 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.096 0.904 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.060 0.940 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 30.523 -9.562 32.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.252 5.252 3 C -0.079 4.079 4 C 0.001 3.999 5 N -0.343 5.343 6 C -0.077 4.077 7 C 0.291 3.709 8 O -0.455 6.455 9 C -0.032 4.032 10 O -0.302 6.302 11 C -0.005 4.005 12 H 0.128 0.872 13 C -0.194 4.194 14 C -0.036 4.036 15 O -0.311 6.311 16 C -0.058 4.058 17 C -0.073 4.073 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.114 0.886 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.078 0.922 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.609 29.956 -10.094 31.945 hybrid contribution -0.425 -0.836 1.272 1.580 sum 4.184 29.120 -8.822 30.713 Atomic orbital electron populations 1.22411 0.87281 1.02132 1.00093 1.61512 1.08458 1.12910 1.42283 1.22454 1.01097 0.86928 0.97435 1.21305 0.99838 0.81051 0.97708 1.47881 1.18064 1.06286 1.62113 1.22246 0.80514 1.04324 1.00583 1.21044 0.85021 0.87930 0.76940 1.90733 1.22066 1.85257 1.47438 1.22516 0.92338 0.86183 1.02176 1.88077 1.41009 1.17346 1.83770 1.23749 0.97643 0.80947 0.98121 0.87221 1.23075 0.98833 0.97879 0.99564 1.23567 0.83560 1.02391 0.94119 1.89124 1.28419 1.29629 1.83891 1.24061 1.01643 0.83953 0.96099 1.21752 1.02296 0.90346 0.92927 1.20679 0.83815 0.88585 0.83985 1.90460 1.45082 1.81364 1.32972 1.41920 1.50045 1.07068 1.22082 1.19639 1.34511 0.84010 1.08179 0.90225 1.26038 0.96224 1.04351 0.94640 1.69667 1.38066 1.37268 1.11164 0.84981 0.78540 0.76711 0.78046 1.19581 1.19502 1.19870 0.90646 0.92017 0.96458 0.88584 0.96063 0.91989 0.87919 0.90317 0.89559 0.88426 0.87076 0.86637 0.87525 0.90083 0.86866 0.92617 0.92684 0.86492 0.86616 0.92225 0.77055 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 8.96 127.69 1.14 2.19 16 2 N -0.53 -17.85 4.50 -927.03 -4.17 -22.02 16 3 C 0.05 1.27 5.28 86.30 0.46 1.73 16 4 C 0.12 2.81 5.33 86.38 0.46 3.27 16 5 N -0.61 -10.27 2.87 -846.74 -2.43 -12.70 16 6 C 0.06 0.41 10.24 127.77 1.31 1.72 16 7 C 0.50 10.76 7.75 87.66 0.68 11.44 16 8 O -0.58 -19.20 16.08 16.01 0.26 -18.95 16 9 C 0.05 0.56 4.81 71.24 0.34 0.90 16 10 O -0.38 -6.96 9.51 -129.94 -1.24 -8.20 16 11 C 0.05 0.61 3.61 31.61 0.11 0.73 16 12 H 0.11 0.59 7.82 -2.39 -0.02 0.57 16 13 C -0.16 -1.74 6.90 31.61 0.22 -1.52 16 14 C 0.04 0.49 7.63 72.49 0.55 1.05 16 15 O -0.39 -6.44 11.65 -148.98 -1.74 -8.18 16 16 C 0.02 0.25 7.38 72.49 0.53 0.79 16 17 C 0.06 2.09 5.45 85.56 0.47 2.56 16 18 C 0.44 21.45 7.47 87.66 0.66 22.10 16 19 O -0.61 -34.19 13.91 -3.06 -0.04 -34.23 16 20 N -0.57 -29.87 5.29 -307.00 -1.62 -31.49 16 21 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 25 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H 0.07 2.46 6.47 -2.38 -0.02 2.45 16 30 H 0.06 2.67 5.83 -2.39 -0.01 2.65 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 2.02 7.93 -2.39 -0.02 2.00 16 33 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 34 H 0.06 1.74 5.83 -2.39 -0.01 1.72 16 35 H 0.10 2.06 8.07 -2.38 -0.02 2.04 16 36 H 0.08 0.27 8.14 -2.39 -0.02 0.26 16 37 H 0.09 0.51 8.07 -2.39 -0.02 0.49 16 38 H 0.10 0.10 6.44 -2.38 -0.02 0.08 16 39 H 0.11 0.64 7.40 -2.39 -0.02 0.62 16 40 H 0.12 0.59 8.07 -2.39 -0.02 0.57 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 1.14 8.00 -2.38 -0.02 1.12 16 43 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 46 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.12 3.52 7.93 -2.39 -0.02 3.50 16 48 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 49 H 0.40 19.57 7.90 -92.70 -0.73 18.84 16 50 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -81.56 408.14 -0.25 -81.81 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.21 Total: 30.05 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 8.21 Total: 28.39 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -7.94 Total: -115.96 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -2.76 Total: -69.56 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -81.56 -0.25 -81.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753853208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.523 kcal (2) G-P(sol) polarization free energy of solvation -81.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds