Wall clock time and date at job start Wed Apr 1 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08992 * 109.87409 * 53.99250 * 3 2 1 5 5 O 1.43745 * 109.87816 * 292.82804 * 3 2 1 6 6 C 1.44383 * 106.97778 * 214.06675 * 5 3 2 7 7 C 1.54992 * 103.48852 * 40.05943 * 6 5 3 8 8 C 1.54109 * 109.87591 * 175.00223 * 3 2 1 9 9 H 1.08998 * 110.48456 * 2.77475 * 8 3 2 10 10 C 1.50702 * 110.48469 * 240.26069 * 8 3 2 11 11 O 1.21285 * 120.00003 * 359.97438 * 10 8 3 12 12 N 1.34774 * 120.00056 * 179.97438 * 10 8 3 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46888 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.47190 * 305.00587 * 14 13 12 16 16 O 1.42901 * 109.46608 * 65.00502 * 14 13 12 17 17 C 1.52998 * 109.46889 * 185.00201 * 14 13 12 18 18 N 1.46899 * 109.46826 * 180.02562 * 17 14 13 19 19 C 1.46903 * 110.99869 * 179.97438 * 18 17 14 20 20 C 1.50696 * 109.47014 * 180.02562 * 19 18 17 21 21 O 1.21293 * 120.00143 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99893 * 180.02562 * 20 19 18 23 23 C 1.37092 * 120.00243 * 180.02562 * 22 20 19 24 24 H 1.08005 * 120.00103 * 359.97438 * 23 22 20 25 25 C 1.38954 * 120.00565 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99707 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00166 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46865 * 60.00267 * 27 25 23 29 29 H 1.48502 * 109.46629 * 180.02562 * 27 25 23 30 30 H 1.48492 * 109.47175 * 300.00093 * 27 25 23 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.08996 * 110.61408 * 281.56165 * 6 5 3 37 37 H 1.08996 * 110.75360 * 158.62969 * 6 5 3 38 38 H 1.09006 * 110.90593 * 204.77856 * 7 6 5 39 39 H 1.09003 * 110.93623 * 81.19147 * 7 6 5 40 40 H 0.97005 * 119.99789 * 0.02562 * 12 10 8 41 41 H 1.08993 * 109.47435 * 300.00193 * 13 12 10 42 42 H 1.08998 * 109.46966 * 60.00227 * 13 12 10 43 43 H 0.96696 * 114.00333 * 59.99917 * 16 14 13 44 44 H 1.09003 * 109.47190 * 300.00150 * 17 14 13 45 45 H 1.08996 * 109.47026 * 60.00028 * 17 14 13 46 46 H 1.00895 * 111.00449 * 303.95070 * 18 17 14 47 47 H 1.09003 * 109.47359 * 300.00243 * 19 18 17 48 48 H 1.08999 * 109.47071 * 59.99902 * 19 18 17 49 49 H 0.97003 * 120.00141 * 359.97438 * 22 20 19 50 50 H 0.97002 * 120.00324 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9927 0.8292 5 8 1.7084 2.0781 -1.2459 6 6 2.7842 2.9909 -1.5530 7 6 4.0545 2.2040 -1.1413 8 6 3.5758 1.4552 0.1263 9 1 3.9660 0.4376 0.1385 10 6 3.9966 2.1952 1.3699 11 8 3.1581 2.6767 2.1020 12 7 5.3048 2.3218 1.6685 13 6 5.7138 3.0416 2.8771 14 6 7.2404 3.0389 2.9801 15 1 7.6054 2.0126 2.9409 16 8 7.7925 3.7828 1.8920 17 6 7.6634 3.6804 4.3031 18 7 9.1291 3.6784 4.4018 19 6 9.5727 4.2889 5.6622 20 6 11.0781 4.2694 5.7271 21 8 11.7185 3.7934 4.8136 22 7 11.7129 4.7800 6.8008 23 6 13.0825 4.7629 6.8597 24 1 13.6528 4.3398 6.0459 25 6 13.7371 5.2898 7.9664 26 7 13.0433 5.8041 8.9568 27 14 15.6032 5.2657 8.0469 28 1 16.1579 6.0332 6.9030 29 1 16.0516 5.8822 9.3213 30 1 16.0834 3.8621 7.9807 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.6916 3.9045 -0.9659 37 1 2.8034 3.2208 -2.6182 38 1 4.8736 2.8835 -0.9057 39 1 4.3469 1.5009 -1.9213 40 1 5.9754 1.9370 1.0827 41 1 5.3545 4.0694 2.8271 42 1 5.2901 2.5508 3.7532 43 1 7.5100 4.7072 1.8641 44 1 7.2983 4.7068 4.3424 45 1 7.2422 3.1131 5.1330 46 1 9.4969 2.7441 4.3031 47 1 9.2205 5.3193 5.7106 48 1 9.1651 3.7258 6.5018 49 1 11.2008 5.1604 7.5315 50 1 13.5001 6.1716 9.7295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753921781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:21 Heat of formation + Delta-G solvation = -179.031358 kcal Electronic energy + Delta-G solvation = -29363.055826 eV Core-core repulsion = 25003.759701 eV Total energy + Delta-G solvation = -4359.296125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03230 -39.16060 -38.43031 -37.80219 -35.06248 -34.61176 -33.96360 -33.80772 -32.84839 -31.25957 -30.30816 -28.81137 -27.30786 -25.22421 -24.18884 -23.29881 -22.73692 -22.04512 -21.54522 -20.36944 -19.27661 -18.03330 -17.91712 -17.10765 -16.70688 -16.57717 -16.19959 -16.05871 -15.71252 -15.32981 -15.21841 -14.80510 -14.67496 -14.45149 -13.98605 -13.95605 -13.77245 -13.72837 -13.48362 -13.42232 -13.26582 -12.68525 -12.53756 -12.37239 -12.04709 -11.91426 -11.79051 -11.58492 -11.53295 -11.51902 -11.28949 -11.20141 -11.18204 -11.03057 -10.46280 -10.45197 -10.23674 -10.14043 -9.92504 -9.51880 -9.51517 -8.49043 -8.10683 -7.97916 -6.43299 -3.84270 2.16981 2.63718 3.19072 3.24864 3.29262 3.38597 3.87222 3.91339 3.94993 4.13834 4.19192 4.22715 4.29611 4.46384 4.62170 4.65265 4.74052 4.77330 4.80073 4.87216 4.95275 5.03737 5.07012 5.21038 5.24178 5.26863 5.27608 5.32561 5.40289 5.43867 5.47013 5.54313 5.59045 5.73075 5.77810 5.80609 5.91937 5.93549 5.99024 6.22615 6.46830 7.04321 7.09483 7.45153 7.53471 7.60749 7.77101 8.04179 8.59387 9.16108 9.52199 10.03729 10.74318 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.037388 B = 0.001406 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.719269 B =19912.010064 C =20208.076921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.084 3.916 4 H 0.095 0.905 5 O -0.369 6.369 6 C 0.047 3.953 7 C -0.145 4.145 8 C -0.145 4.145 9 H 0.113 0.887 10 C 0.520 3.480 11 O -0.536 6.536 12 N -0.720 5.720 13 C 0.087 3.913 14 C 0.101 3.899 15 H 0.104 0.896 16 O -0.542 6.542 17 C 0.029 3.971 18 N -0.658 5.658 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.406 0.594 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.376 0.624 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.350 0.650 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.315 -8.545 -16.681 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.027 3.973 4 H 0.112 0.888 5 O -0.288 6.288 6 C -0.030 4.030 7 C -0.183 4.183 8 C -0.167 4.167 9 H 0.131 0.869 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.372 5.372 13 C -0.038 4.038 14 C 0.041 3.959 15 H 0.122 0.878 16 O -0.347 6.347 17 C -0.101 4.101 18 N -0.290 5.290 19 C -0.082 4.082 20 C 0.225 3.775 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.431 4.431 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.242 0.758 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.223 0.777 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.170 0.830 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.233 -8.455 -17.172 30.102 hybrid contribution 0.715 -0.011 1.406 1.577 sum -22.518 -8.466 -15.766 28.763 Atomic orbital electron populations 1.21702 0.94952 1.01560 1.02453 1.21709 0.97261 0.94415 1.02470 1.22861 0.91116 0.95014 0.88353 0.88758 1.88882 1.43468 1.57075 1.39373 1.23545 0.84959 0.92894 1.01613 1.23170 0.99304 0.99872 0.95999 1.22748 0.98590 1.01518 0.93823 0.86898 1.20341 0.82408 0.79949 0.86686 1.90708 1.51012 1.48409 1.51189 1.45862 1.07304 1.57284 1.26729 1.22115 0.95782 0.97901 0.87977 1.22093 0.89579 0.97081 0.87168 0.87845 1.86625 1.73331 1.26565 1.48170 1.22565 0.90208 1.01350 0.96027 1.59947 1.06229 1.27687 1.35174 1.21690 0.95680 1.00480 0.90373 1.19776 0.88398 0.84861 0.84438 1.90533 1.67368 1.50350 1.38335 1.41853 1.07418 1.52985 1.17733 1.19664 0.81455 1.37243 1.04690 0.87956 1.25262 1.00659 0.96720 0.95229 1.69602 1.36537 1.40000 1.08181 0.85910 0.82159 0.78671 0.77435 1.19857 1.20968 1.19922 0.92718 0.92649 0.91992 0.91219 0.90836 0.92019 0.88521 0.89437 0.89162 0.75824 0.90801 0.90418 0.77691 0.90433 0.94402 0.83018 0.89622 0.93914 0.77472 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.83 37.16 0.37 -0.65 16 2 C -0.12 -0.82 5.42 -26.73 -0.14 -0.96 16 3 C 0.08 0.70 3.02 -26.15 -0.08 0.62 16 4 H 0.09 1.00 6.43 -51.93 -0.33 0.66 16 5 O -0.37 -3.37 10.84 -35.23 -0.38 -3.75 16 6 C 0.05 0.32 7.72 38.21 0.29 0.61 16 7 C -0.15 -0.78 6.70 -24.73 -0.17 -0.95 16 8 C -0.15 -0.96 3.06 -90.24 -0.28 -1.24 16 9 H 0.11 0.55 7.70 -51.93 -0.40 0.15 16 10 C 0.52 4.63 7.06 -10.99 -0.08 4.55 16 11 O -0.54 -6.82 15.25 5.55 0.08 -6.74 16 12 N -0.72 -5.19 5.36 -60.29 -0.32 -5.51 16 13 C 0.09 0.68 5.31 -4.04 -0.02 0.65 16 14 C 0.10 0.87 3.21 -26.73 -0.09 0.79 16 15 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 16 O -0.54 -5.45 13.15 -35.23 -0.46 -5.92 16 17 C 0.03 0.30 5.35 -3.83 -0.02 0.28 16 18 N -0.66 -9.97 5.99 -115.06 -0.69 -10.66 16 19 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 20 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 21 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 22 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 23 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 24 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 27 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 7.91 -51.93 -0.41 0.06 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.43 7.75 -51.93 -0.40 0.03 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.41 2.31 8.47 -40.82 -0.35 1.96 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.38 2.88 9.05 45.56 0.41 3.29 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 47 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 414.52 15.07 6.25 6.25 Total: -1.00 -34.66 414.52 -7.93 -42.59 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -7.56 Total: 14.68 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.57 Total: 6.73 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.35 Total: -54.09 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.67 Total: -32.08 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.66 -7.93 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753921781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.445 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds