Wall clock time and date at job start Wed Apr 1 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08992 * 109.87409 * 53.99250 * 3 2 1 5 5 O 1.43745 * 109.87816 * 292.82804 * 3 2 1 6 6 C 1.44383 * 106.97778 * 214.06675 * 5 3 2 7 7 C 1.54992 * 103.48852 * 40.05943 * 6 5 3 8 8 C 1.54109 * 109.87591 * 175.00223 * 3 2 1 9 9 H 1.08998 * 110.48456 * 2.77475 * 8 3 2 10 10 C 1.50702 * 110.48469 * 240.26069 * 8 3 2 11 11 O 1.21285 * 120.00003 * 359.97438 * 10 8 3 12 12 N 1.34774 * 120.00056 * 179.97438 * 10 8 3 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46888 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.47190 * 305.00587 * 14 13 12 16 16 O 1.42901 * 109.46608 * 65.00502 * 14 13 12 17 17 C 1.52998 * 109.46889 * 185.00201 * 14 13 12 18 18 N 1.46899 * 109.46826 * 180.02562 * 17 14 13 19 19 C 1.46903 * 110.99869 * 179.97438 * 18 17 14 20 20 C 1.50696 * 109.47014 * 180.02562 * 19 18 17 21 21 O 1.21293 * 120.00143 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99893 * 180.02562 * 20 19 18 23 23 C 1.37092 * 120.00243 * 180.02562 * 22 20 19 24 24 H 1.08005 * 120.00103 * 359.97438 * 23 22 20 25 25 C 1.38954 * 120.00565 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99707 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00166 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46865 * 60.00267 * 27 25 23 29 29 H 1.48502 * 109.46629 * 180.02562 * 27 25 23 30 30 H 1.48492 * 109.47175 * 300.00093 * 27 25 23 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.08996 * 110.61408 * 281.56165 * 6 5 3 37 37 H 1.08996 * 110.75360 * 158.62969 * 6 5 3 38 38 H 1.09006 * 110.90593 * 204.77856 * 7 6 5 39 39 H 1.09003 * 110.93623 * 81.19147 * 7 6 5 40 40 H 0.97005 * 119.99789 * 0.02562 * 12 10 8 41 41 H 1.08993 * 109.47435 * 300.00193 * 13 12 10 42 42 H 1.08998 * 109.46966 * 60.00227 * 13 12 10 43 43 H 0.96696 * 114.00333 * 59.99917 * 16 14 13 44 44 H 1.09003 * 109.47190 * 300.00150 * 17 14 13 45 45 H 1.08996 * 109.47026 * 60.00028 * 17 14 13 46 46 H 1.00895 * 111.00449 * 303.95070 * 18 17 14 47 47 H 1.09003 * 109.47359 * 300.00243 * 19 18 17 48 48 H 1.08999 * 109.47071 * 59.99902 * 19 18 17 49 49 H 0.97003 * 120.00141 * 359.97438 * 22 20 19 50 50 H 0.97002 * 120.00324 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9927 0.8292 5 8 1.7084 2.0781 -1.2459 6 6 2.7842 2.9909 -1.5530 7 6 4.0545 2.2040 -1.1413 8 6 3.5758 1.4552 0.1263 9 1 3.9660 0.4376 0.1385 10 6 3.9966 2.1952 1.3699 11 8 3.1581 2.6767 2.1020 12 7 5.3048 2.3218 1.6685 13 6 5.7138 3.0416 2.8771 14 6 7.2404 3.0389 2.9801 15 1 7.6054 2.0126 2.9409 16 8 7.7925 3.7828 1.8920 17 6 7.6634 3.6804 4.3031 18 7 9.1291 3.6784 4.4018 19 6 9.5727 4.2889 5.6622 20 6 11.0781 4.2694 5.7271 21 8 11.7185 3.7934 4.8136 22 7 11.7129 4.7800 6.8008 23 6 13.0825 4.7629 6.8597 24 1 13.6528 4.3398 6.0459 25 6 13.7371 5.2898 7.9664 26 7 13.0433 5.8041 8.9568 27 14 15.6032 5.2657 8.0469 28 1 16.1579 6.0332 6.9030 29 1 16.0516 5.8822 9.3213 30 1 16.0834 3.8621 7.9807 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.6916 3.9045 -0.9659 37 1 2.8034 3.2208 -2.6182 38 1 4.8736 2.8835 -0.9057 39 1 4.3469 1.5009 -1.9213 40 1 5.9754 1.9370 1.0827 41 1 5.3545 4.0694 2.8271 42 1 5.2901 2.5508 3.7532 43 1 7.5100 4.7072 1.8641 44 1 7.2983 4.7068 4.3424 45 1 7.2422 3.1131 5.1330 46 1 9.4969 2.7441 4.3031 47 1 9.2205 5.3193 5.7106 48 1 9.1651 3.7258 6.5018 49 1 11.2008 5.1604 7.5315 50 1 13.5001 6.1716 9.7295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753921781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:20 Heat of formation + Delta-G solvation = -209.711528 kcal Electronic energy + Delta-G solvation = -29364.386218 eV Core-core repulsion = 25003.759701 eV Total energy + Delta-G solvation = -4360.626517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67074 -40.21336 -39.74207 -38.75755 -36.33364 -35.68943 -35.34173 -34.51778 -33.42617 -33.26335 -31.21047 -29.39451 -28.55088 -26.66654 -25.20471 -24.20912 -23.36403 -22.80046 -22.13784 -21.14529 -20.94114 -19.90959 -18.66634 -18.16791 -17.48881 -17.32175 -17.18012 -16.82710 -16.73277 -16.46575 -16.31452 -16.08372 -15.74241 -15.60134 -15.26420 -15.01534 -14.56406 -14.51351 -14.46269 -14.22907 -14.02491 -13.91422 -13.51782 -13.41059 -13.19881 -12.98725 -12.94456 -12.69566 -12.56109 -12.43215 -12.30483 -12.12393 -12.07389 -11.93637 -11.81664 -11.70936 -11.50092 -11.19868 -10.87897 -10.58678 -10.32720 -10.19122 -10.01684 -9.29616 -8.46609 -5.95520 1.40176 1.42193 1.49664 1.53050 1.99155 2.05622 2.29726 2.83547 2.89829 3.20738 3.42783 3.43322 3.55702 3.63762 3.69532 3.82102 3.98520 4.03820 4.11261 4.16145 4.22992 4.29723 4.32059 4.42661 4.44539 4.50602 4.54482 4.56311 4.68606 4.73389 4.78777 4.79987 4.85554 4.98618 5.02046 5.05431 5.07055 5.23690 5.33575 5.40023 5.40669 5.86183 5.89535 6.08380 6.36796 6.44240 6.60136 6.86890 7.12611 7.13454 7.56303 8.11783 8.70437 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.037388 B = 0.001406 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.719269 B =19912.010064 C =20208.076921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.064 0.936 5 O -0.387 6.387 6 C 0.038 3.962 7 C -0.136 4.136 8 C -0.140 4.140 9 H 0.138 0.862 10 C 0.519 3.481 11 O -0.580 6.580 12 N -0.708 5.708 13 C 0.095 3.905 14 C 0.114 3.886 15 H 0.106 0.894 16 O -0.558 6.558 17 C 0.030 3.970 18 N -0.673 5.673 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.623 6.623 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.079 0.921 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.272 1.272 29 H -0.270 1.270 30 H -0.272 1.272 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.417 0.583 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.385 0.615 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.344 0.656 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.246 -9.204 -17.163 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.082 0.918 5 O -0.307 6.307 6 C -0.039 4.039 7 C -0.174 4.174 8 C -0.161 4.161 9 H 0.156 0.844 10 C 0.306 3.694 11 O -0.460 6.460 12 N -0.360 5.360 13 C -0.030 4.030 14 C 0.054 3.946 15 H 0.124 0.876 16 O -0.365 6.365 17 C -0.100 4.100 18 N -0.306 5.306 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.211 5.211 23 C -0.466 4.466 24 H 0.097 0.903 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.197 1.197 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.254 0.746 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.234 0.766 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.162 0.838 47 H 0.122 0.878 48 H 0.084 0.916 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.175 -9.105 -17.658 30.525 hybrid contribution 0.627 0.216 1.519 1.657 sum -22.548 -8.889 -16.139 29.119 Atomic orbital electron populations 1.21697 0.95332 1.02131 1.01503 1.21720 0.96987 0.93525 1.03383 1.22817 0.92244 0.95391 0.87231 0.91774 1.88865 1.44754 1.57542 1.39501 1.23715 0.85286 0.92338 1.02521 1.23180 0.98540 0.99992 0.95697 1.22757 0.97452 1.02667 0.93211 0.84410 1.20728 0.82308 0.79428 0.86903 1.90697 1.52193 1.50345 1.52753 1.45777 1.07099 1.56607 1.26548 1.21977 0.94978 0.97879 0.88182 1.21956 0.89806 0.96845 0.85981 0.87614 1.86601 1.73770 1.27511 1.48591 1.22668 0.87245 1.02557 0.97533 1.59939 1.09189 1.27308 1.34138 1.21540 0.90587 1.02254 0.92341 1.20915 0.91127 0.82670 0.82916 1.90499 1.69216 1.51644 1.39593 1.41931 1.06811 1.53723 1.18588 1.19644 0.82948 1.39060 1.04962 0.90328 1.26028 1.04911 0.95746 0.94453 1.69662 1.38119 1.39870 1.08425 0.84994 0.76846 0.78704 0.77831 1.19752 1.19489 1.19671 0.91346 0.93545 0.93009 0.90054 0.89978 0.93393 0.86756 0.88798 0.87086 0.74630 0.91013 0.90552 0.76581 0.89424 0.92820 0.83769 0.87812 0.91551 0.76974 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.83 71.98 0.71 -1.29 16 2 C -0.12 -1.48 5.42 30.59 0.17 -1.32 16 3 C 0.08 1.32 3.02 30.97 0.09 1.42 16 4 H 0.06 1.44 6.43 -2.39 -0.02 1.42 16 5 O -0.39 -6.95 10.84 -148.98 -1.61 -8.57 16 6 C 0.04 0.48 7.72 72.66 0.56 1.04 16 7 C -0.14 -1.17 6.70 31.89 0.21 -0.96 16 8 C -0.14 -1.64 3.06 -10.55 -0.03 -1.67 16 9 H 0.14 0.93 7.70 -2.39 -0.02 0.92 16 10 C 0.52 8.74 7.06 87.66 0.62 9.36 16 11 O -0.58 -14.87 15.25 -3.05 -0.05 -14.92 16 12 N -0.71 -9.00 5.36 -463.06 -2.48 -11.48 16 13 C 0.09 1.31 5.31 86.38 0.46 1.77 16 14 C 0.11 1.74 3.21 30.60 0.10 1.84 16 15 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 16 O -0.56 -10.23 13.15 -148.98 -1.96 -12.19 16 17 C 0.03 0.55 5.35 86.30 0.46 1.01 16 18 N -0.67 -19.38 5.99 -517.94 -3.10 -22.48 16 19 C 0.07 2.11 6.17 85.56 0.53 2.64 16 20 C 0.44 20.43 7.82 87.66 0.69 21.12 16 21 O -0.62 -34.31 15.78 -3.07 -0.05 -34.36 16 22 N -0.57 -29.14 5.29 -306.98 -1.62 -30.77 16 23 C -0.34 -19.06 9.68 84.04 0.81 -18.24 16 24 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 25 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 26 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 27 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 30 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.79 7.91 -2.39 -0.02 0.77 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.71 7.75 -2.38 -0.02 0.69 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.42 3.74 8.47 -92.70 -0.79 2.95 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.39 5.24 9.05 -74.06 -0.67 4.57 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.34 10.62 8.43 -89.70 -0.76 9.86 16 47 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 48 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.40 19.07 7.90 -92.71 -0.73 18.33 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -76.21 414.52 -4.68 -80.90 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -1.96 Total: 41.64 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.84 Total: 16.58 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -6.92 Total: -113.74 kcal Atomic # 8 Polarization: -66.37 SS G_CDS: -3.67 Total: -70.04 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -76.21 -4.68 -80.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753921781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.816 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds