Wall clock time and date at job start Wed Apr 1 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 H 1.09005 * 109.46828 * 306.19345 * 3 2 1 5 5 O 1.42898 * 109.47022 * 66.18811 * 3 2 1 6 6 C 1.42899 * 114.00529 * 256.92347 * 5 3 2 7 7 C 1.50699 * 109.47214 * 186.19177 * 3 2 1 8 8 O 1.21276 * 119.99711 * 255.41458 * 7 3 2 9 9 N 1.34771 * 119.99955 * 75.42050 * 7 3 2 10 10 C 1.47172 * 120.99241 * 355.63754 * 9 7 3 11 11 C 1.53291 * 108.41565 * 230.53551 * 10 9 7 12 12 O 1.42966 * 109.22417 * 307.72115 * 11 10 9 13 13 C 1.42964 * 114.16652 * 62.57802 * 12 11 10 14 14 H 1.09000 * 109.50986 * 57.34734 * 13 12 11 15 15 C 1.53000 * 109.55252 * 177.47036 * 13 12 11 16 16 N 1.46901 * 109.47119 * 299.76987 * 15 13 12 17 17 C 1.46894 * 110.99934 * 179.97438 * 16 15 13 18 18 C 1.50709 * 109.47139 * 180.02562 * 17 16 15 19 19 O 1.21284 * 119.99670 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99685 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99812 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99547 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00127 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99948 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46728 * 60.00295 * 25 23 21 27 27 H 1.48503 * 109.46921 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47186 * 299.99862 * 25 23 21 29 29 C 1.47150 * 120.98335 * 175.70851 * 9 7 3 30 30 H 1.08991 * 109.47370 * 60.82097 * 1 2 3 31 31 H 1.09003 * 109.47227 * 180.82276 * 1 2 3 32 32 H 1.09003 * 109.46993 * 300.81528 * 1 2 3 33 33 H 1.08994 * 109.47212 * 239.99830 * 2 1 3 34 34 H 1.09007 * 109.47191 * 119.99689 * 2 1 3 35 35 H 1.09000 * 109.47416 * 184.78733 * 6 5 3 36 36 H 1.08999 * 109.46894 * 304.78824 * 6 5 3 37 37 H 1.08999 * 109.46943 * 64.78583 * 6 5 3 38 38 H 1.09001 * 109.64319 * 110.81520 * 10 9 7 39 39 H 1.08998 * 109.71081 * 350.30331 * 10 9 7 40 40 H 1.08994 * 109.51279 * 187.79700 * 11 10 9 41 41 H 1.08999 * 109.55206 * 67.66967 * 11 10 9 42 42 H 1.08997 * 109.47014 * 59.77043 * 15 13 12 43 43 H 1.08998 * 109.46794 * 179.77316 * 15 13 12 44 44 H 1.00907 * 110.99649 * 56.04934 * 16 15 13 45 45 H 1.08999 * 109.47421 * 300.00472 * 17 16 15 46 46 H 1.09003 * 109.47331 * 60.00551 * 17 16 15 47 47 H 0.96996 * 120.00405 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99761 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.68079 * 9.72041 * 29 9 7 50 50 H 1.09003 * 109.68452 * 249.20502 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5890 1.9873 -0.8294 5 8 1.6860 2.0728 1.2326 6 6 0.5755 2.9664 1.1306 7 6 3.5392 1.4452 -0.1532 8 8 4.2462 1.6741 0.8051 9 7 4.0941 1.1934 -1.3553 10 6 3.2625 0.8199 -2.5106 11 6 3.8512 -0.4471 -3.1415 12 8 5.2421 -0.2415 -3.4005 13 6 6.0271 -0.0071 -2.2288 14 1 5.9123 -0.8443 -1.5403 15 6 7.4996 0.1354 -2.6192 16 7 7.9559 -1.1009 -3.2683 17 6 9.3686 -1.0002 -3.6583 18 6 9.7998 -2.2837 -4.3201 19 8 9.0080 -3.1926 -4.4540 20 7 11.0652 -2.4214 -4.7629 21 6 11.4577 -3.5892 -5.3645 22 1 10.7528 -4.3989 -5.4830 23 6 12.7621 -3.7311 -5.8215 24 7 13.6198 -2.7461 -5.6768 25 14 13.2969 -5.3226 -6.6405 26 1 12.4658 -5.5616 -7.8477 27 1 14.7252 -5.2209 -7.0344 28 1 13.1253 -6.4504 -5.6899 29 6 5.5498 1.2824 -1.5512 30 1 -0.3633 0.5010 -0.8972 31 1 -0.3634 -1.0276 0.0148 32 1 -0.3633 0.5265 0.8826 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.4233 3.4676 2.0865 36 1 0.7767 3.7093 0.3588 37 1 -0.3206 2.4038 0.8686 38 1 3.2652 1.6290 -3.2410 39 1 2.2417 0.6260 -2.1814 40 1 3.3346 -0.6618 -4.0770 41 1 3.7284 -1.2864 -2.4570 42 1 7.6133 0.9714 -3.3092 43 1 8.0963 0.3180 -1.7255 44 1 7.3769 -1.3268 -4.0633 45 1 9.4949 -0.1720 -4.3557 46 1 9.9786 -0.8252 -2.7721 47 1 11.6983 -1.6944 -4.6561 48 1 14.5303 -2.8450 -5.9963 49 1 6.0440 1.3945 -0.5861 50 1 5.7834 2.1381 -2.1847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754996354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:06 Heat of formation + Delta-G solvation = -149.582480 kcal Electronic energy + Delta-G solvation = -30353.342319 eV Core-core repulsion = 25995.323193 eV Total energy + Delta-G solvation = -4358.019126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99186 -39.24157 -38.21466 -37.84677 -35.72985 -34.97788 -33.87245 -33.76684 -31.99610 -31.15723 -29.30672 -28.64393 -27.29051 -26.06799 -24.87873 -23.85103 -23.15014 -22.35786 -21.38921 -19.75857 -19.20822 -18.12240 -17.85188 -17.35893 -16.82004 -16.47688 -16.27379 -15.96578 -15.57972 -15.42715 -15.16229 -14.98797 -14.69155 -14.47991 -14.31601 -14.15672 -13.83420 -13.61324 -13.43363 -13.34060 -12.99431 -12.88868 -12.64217 -12.45915 -12.09211 -11.99597 -11.90903 -11.74850 -11.62397 -11.46321 -11.37792 -11.33135 -11.00098 -10.92486 -10.51163 -10.41760 -10.31775 -10.18236 -9.75406 -9.46724 -8.92107 -8.41748 -8.02029 -7.92181 -6.38335 -3.79086 2.17606 2.23908 3.22657 3.27929 3.31709 3.32585 3.44878 3.92207 3.95103 4.05655 4.23360 4.25510 4.32144 4.45112 4.49472 4.64300 4.71126 4.74623 4.81870 4.84109 4.92574 4.96654 5.00609 5.11826 5.17621 5.18938 5.27003 5.28251 5.31748 5.34842 5.40860 5.49937 5.55585 5.68763 5.70434 5.77356 5.88474 5.94062 6.01910 6.30326 6.51296 6.90546 6.91019 7.23518 7.58181 7.75031 7.76175 8.09816 8.65223 9.21285 9.58106 10.09943 10.79401 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.001686 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.956742 B =16605.119200 C =17035.565202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.076 3.924 4 H 0.086 0.914 5 O -0.356 6.356 6 C 0.024 3.976 7 C 0.513 3.487 8 O -0.515 6.515 9 N -0.614 5.614 10 C 0.063 3.937 11 C 0.050 3.950 12 O -0.369 6.369 13 C 0.082 3.918 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.085 3.915 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.358 0.642 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.104 0.896 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.878 13.591 8.600 31.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.014 3.986 4 H 0.104 0.896 5 O -0.274 6.274 6 C -0.073 4.073 7 C 0.299 3.701 8 O -0.389 6.389 9 N -0.351 5.351 10 C -0.060 4.060 11 C -0.028 4.028 12 O -0.288 6.288 13 C 0.023 3.977 14 H 0.094 0.906 15 C -0.061 4.061 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.038 4.038 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.178 0.822 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.509 12.766 9.579 30.942 hybrid contribution 0.379 0.462 -1.175 1.319 sum -26.130 13.228 8.404 30.469 Atomic orbital electron populations 1.21843 0.94432 1.02754 1.02096 1.22050 0.97352 0.94505 1.04120 1.22031 0.91867 0.95777 0.88931 0.89616 1.88053 1.50191 1.60207 1.28908 1.23039 0.88639 0.92542 1.03055 1.20644 0.90381 0.76779 0.82261 1.90727 1.63243 1.47129 1.37756 1.48093 1.07711 1.69714 1.09560 1.22677 0.95440 0.99153 0.88682 1.22922 0.82958 0.95218 1.01692 1.87995 1.17847 1.91974 1.30937 1.22562 0.91317 0.96132 0.87697 0.90645 1.21901 0.91867 0.92256 1.00037 1.60054 1.02768 1.31725 1.35351 1.21681 0.90224 0.96731 0.99633 1.19800 0.83579 0.89307 0.84593 1.90520 1.52741 1.42342 1.61032 1.41852 1.09464 1.16593 1.52205 1.19659 0.95890 0.93695 1.33670 0.87987 1.25254 0.95673 0.98978 0.98042 1.69606 1.05489 1.32037 1.47251 0.85914 0.77301 0.81418 0.79546 1.19946 1.21005 1.19913 1.22320 0.79875 0.98608 1.03023 0.92586 0.91698 0.91863 0.90100 0.89930 0.89076 0.93846 0.93329 0.90113 0.88640 0.87347 0.92311 0.94478 0.89438 0.82176 0.93811 0.89589 0.77455 0.91862 0.87754 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.25 37.16 0.34 -0.33 16 2 C -0.14 -0.90 5.19 -26.73 -0.14 -1.04 16 3 C 0.08 0.60 1.81 -27.88 -0.05 0.55 16 4 H 0.09 0.45 6.85 -51.93 -0.36 0.10 16 5 O -0.36 -3.45 9.67 -54.65 -0.53 -3.98 16 6 C 0.02 0.13 10.45 101.05 1.06 1.19 16 7 C 0.51 5.68 7.02 -10.99 -0.08 5.60 16 8 O -0.51 -7.97 16.04 -13.86 -0.22 -8.19 16 9 N -0.61 -5.70 3.02 -172.27 -0.52 -6.22 16 10 C 0.06 0.39 5.85 -3.52 -0.02 0.37 16 11 C 0.05 0.39 6.99 37.31 0.26 0.65 16 12 O -0.37 -4.25 9.73 -35.23 -0.34 -4.59 16 13 C 0.08 0.93 3.05 -26.58 -0.08 0.85 16 14 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.07 0.87 5.42 -3.82 -0.02 0.85 16 16 N -0.67 -11.20 6.13 -115.06 -0.70 -11.91 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.67 7.82 -10.98 -0.09 10.59 16 19 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 20 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.08 0.85 5.94 -3.54 -0.02 0.83 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.30 6.18 -51.93 -0.32 -0.02 16 33 H 0.08 0.42 6.08 -51.93 -0.32 0.10 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 0.20 8.03 -51.93 -0.42 -0.22 16 37 H 0.05 0.19 6.09 -51.93 -0.32 -0.13 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.37 4.47 -51.93 -0.23 0.14 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.36 6.45 7.83 -39.29 -0.31 6.15 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.10 1.16 7.07 -51.93 -0.37 0.80 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -36.03 401.51 -7.61 -43.63 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.96 Total: 10.86 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 0.89 Total: 12.86 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.56 Total: -56.79 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.01 Total: -32.86 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.03 -7.61 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754996354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.949 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds