Wall clock time and date at job start Wed Apr 1 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 H 1.09005 * 109.46828 * 306.19345 * 3 2 1 5 5 O 1.42898 * 109.47022 * 66.18811 * 3 2 1 6 6 C 1.42899 * 114.00529 * 256.92347 * 5 3 2 7 7 C 1.50699 * 109.47214 * 186.19177 * 3 2 1 8 8 O 1.21276 * 119.99711 * 255.41458 * 7 3 2 9 9 N 1.34771 * 119.99955 * 75.42050 * 7 3 2 10 10 C 1.47172 * 120.99241 * 355.63754 * 9 7 3 11 11 C 1.53291 * 108.41565 * 230.53551 * 10 9 7 12 12 O 1.42966 * 109.22417 * 307.72115 * 11 10 9 13 13 C 1.42964 * 114.16652 * 62.57802 * 12 11 10 14 14 H 1.09000 * 109.50986 * 57.34734 * 13 12 11 15 15 C 1.53000 * 109.55252 * 177.47036 * 13 12 11 16 16 N 1.46901 * 109.47119 * 299.76987 * 15 13 12 17 17 C 1.46894 * 110.99934 * 179.97438 * 16 15 13 18 18 C 1.50709 * 109.47139 * 180.02562 * 17 16 15 19 19 O 1.21284 * 119.99670 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99685 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99812 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99547 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00127 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99948 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46728 * 60.00295 * 25 23 21 27 27 H 1.48503 * 109.46921 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47186 * 299.99862 * 25 23 21 29 29 C 1.47150 * 120.98335 * 175.70851 * 9 7 3 30 30 H 1.08991 * 109.47370 * 60.82097 * 1 2 3 31 31 H 1.09003 * 109.47227 * 180.82276 * 1 2 3 32 32 H 1.09003 * 109.46993 * 300.81528 * 1 2 3 33 33 H 1.08994 * 109.47212 * 239.99830 * 2 1 3 34 34 H 1.09007 * 109.47191 * 119.99689 * 2 1 3 35 35 H 1.09000 * 109.47416 * 184.78733 * 6 5 3 36 36 H 1.08999 * 109.46894 * 304.78824 * 6 5 3 37 37 H 1.08999 * 109.46943 * 64.78583 * 6 5 3 38 38 H 1.09001 * 109.64319 * 110.81520 * 10 9 7 39 39 H 1.08998 * 109.71081 * 350.30331 * 10 9 7 40 40 H 1.08994 * 109.51279 * 187.79700 * 11 10 9 41 41 H 1.08999 * 109.55206 * 67.66967 * 11 10 9 42 42 H 1.08997 * 109.47014 * 59.77043 * 15 13 12 43 43 H 1.08998 * 109.46794 * 179.77316 * 15 13 12 44 44 H 1.00907 * 110.99649 * 56.04934 * 16 15 13 45 45 H 1.08999 * 109.47421 * 300.00472 * 17 16 15 46 46 H 1.09003 * 109.47331 * 60.00551 * 17 16 15 47 47 H 0.96996 * 120.00405 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99761 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.68079 * 9.72041 * 29 9 7 50 50 H 1.09003 * 109.68452 * 249.20502 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5890 1.9873 -0.8294 5 8 1.6860 2.0728 1.2326 6 6 0.5755 2.9664 1.1306 7 6 3.5392 1.4452 -0.1532 8 8 4.2462 1.6741 0.8051 9 7 4.0941 1.1934 -1.3553 10 6 3.2625 0.8199 -2.5106 11 6 3.8512 -0.4471 -3.1415 12 8 5.2421 -0.2415 -3.4005 13 6 6.0271 -0.0071 -2.2288 14 1 5.9123 -0.8443 -1.5403 15 6 7.4996 0.1354 -2.6192 16 7 7.9559 -1.1009 -3.2683 17 6 9.3686 -1.0002 -3.6583 18 6 9.7998 -2.2837 -4.3201 19 8 9.0080 -3.1926 -4.4540 20 7 11.0652 -2.4214 -4.7629 21 6 11.4577 -3.5892 -5.3645 22 1 10.7528 -4.3989 -5.4830 23 6 12.7621 -3.7311 -5.8215 24 7 13.6198 -2.7461 -5.6768 25 14 13.2969 -5.3226 -6.6405 26 1 12.4658 -5.5616 -7.8477 27 1 14.7252 -5.2209 -7.0344 28 1 13.1253 -6.4504 -5.6899 29 6 5.5498 1.2824 -1.5512 30 1 -0.3633 0.5010 -0.8972 31 1 -0.3634 -1.0276 0.0148 32 1 -0.3633 0.5265 0.8826 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.4233 3.4676 2.0865 36 1 0.7767 3.7093 0.3588 37 1 -0.3206 2.4038 0.8686 38 1 3.2652 1.6290 -3.2410 39 1 2.2417 0.6260 -2.1814 40 1 3.3346 -0.6618 -4.0770 41 1 3.7284 -1.2864 -2.4570 42 1 7.6133 0.9714 -3.3092 43 1 8.0963 0.3180 -1.7255 44 1 7.3769 -1.3268 -4.0633 45 1 9.4949 -0.1720 -4.3557 46 1 9.9786 -0.8252 -2.7721 47 1 11.6983 -1.6944 -4.6561 48 1 14.5303 -2.8450 -5.9963 49 1 6.0440 1.3945 -0.5861 50 1 5.7834 2.1381 -2.1847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754996354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:05 Heat of formation + Delta-G solvation = -178.297617 kcal Electronic energy + Delta-G solvation = -30354.587501 eV Core-core repulsion = 25995.323193 eV Total energy + Delta-G solvation = -4359.264308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74922 -40.23197 -39.85756 -38.60920 -36.90224 -36.01469 -35.73200 -34.36069 -33.30517 -32.83081 -29.93131 -29.56691 -28.30600 -27.06024 -26.13750 -24.91360 -24.10838 -22.94222 -22.28258 -21.07969 -20.46959 -19.90615 -18.80334 -18.07240 -17.91852 -17.62290 -17.06234 -16.94310 -16.67334 -16.39964 -16.28445 -16.08552 -15.87885 -15.67454 -15.49010 -15.09686 -14.93964 -14.65910 -14.41330 -14.37538 -14.15084 -13.56144 -13.48743 -13.34688 -13.21761 -13.09666 -12.98989 -12.80980 -12.66419 -12.56115 -12.42557 -12.33743 -12.25707 -12.11573 -11.83105 -11.70838 -11.49887 -11.26113 -11.02864 -10.44951 -10.34967 -10.01287 -9.69277 -9.33964 -8.45853 -5.94875 1.37280 1.40600 1.42265 1.53261 1.54965 2.05706 2.29848 2.68022 2.79711 2.89014 3.21233 3.30360 3.46676 3.73095 3.78468 3.81032 3.88854 3.94165 4.01124 4.17821 4.24307 4.27602 4.32156 4.37216 4.40682 4.47695 4.49643 4.55076 4.57094 4.61995 4.67106 4.71922 4.80391 4.82724 4.83745 4.94679 5.04026 5.13468 5.20266 5.36703 5.41156 5.86180 5.97205 6.07296 6.15404 6.22913 6.39934 6.60815 6.96856 7.12911 7.56507 8.12035 8.71261 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.001686 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.956742 B =16605.119200 C =17035.565202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.079 3.921 4 H 0.119 0.881 5 O -0.391 6.391 6 C 0.017 3.983 7 C 0.505 3.495 8 O -0.571 6.571 9 N -0.611 5.611 10 C 0.065 3.935 11 C 0.041 3.959 12 O -0.389 6.389 13 C 0.092 3.908 14 H 0.054 0.946 15 C 0.071 3.929 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.089 3.911 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.349 0.651 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.089 0.911 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.371 14.523 7.470 32.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.018 3.982 4 H 0.137 0.863 5 O -0.310 6.310 6 C -0.079 4.079 7 C 0.294 3.706 8 O -0.449 6.449 9 N -0.346 5.346 10 C -0.056 4.056 11 C -0.035 4.035 12 O -0.308 6.308 13 C 0.033 3.967 14 H 0.072 0.928 15 C -0.059 4.059 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.035 4.035 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.168 0.832 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.019 13.727 8.433 32.320 hybrid contribution 0.784 0.189 -0.821 1.151 sum -27.235 13.915 7.611 31.517 Atomic orbital electron populations 1.21834 0.92572 1.03342 1.02985 1.22047 0.98867 0.93333 1.03490 1.22151 0.89496 0.96989 0.89587 0.86315 1.88016 1.51699 1.61101 1.30161 1.23244 0.88268 0.92574 1.03782 1.21387 0.91783 0.75635 0.81830 1.90693 1.64700 1.49897 1.39627 1.48211 1.07646 1.68713 1.10078 1.22893 0.96075 0.98879 0.87779 1.23202 0.81416 0.95865 1.03063 1.87964 1.19738 1.92132 1.30929 1.22333 0.90977 0.95969 0.87457 0.92783 1.21992 0.92709 0.90846 1.00307 1.60036 1.01898 1.34458 1.35035 1.21551 0.91296 0.93632 1.00324 1.20871 0.82524 0.90817 0.83328 1.90485 1.53675 1.44481 1.62372 1.41918 1.10295 1.16171 1.52581 1.19647 0.96444 0.94483 1.36025 0.90335 1.26049 0.95106 1.02177 0.97908 1.69668 1.05830 1.33365 1.47186 0.84974 0.77447 0.77367 0.78443 1.19609 1.19424 1.19827 1.22187 0.80709 0.98304 1.02252 0.90310 0.91266 0.92368 0.88846 0.92540 0.88847 0.92736 0.91305 0.88330 0.85818 0.84934 0.92905 0.92891 0.88403 0.83174 0.91370 0.87623 0.76925 0.91281 0.89308 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.25 71.98 0.67 -0.27 16 2 C -0.14 -1.56 5.19 30.59 0.16 -1.40 16 3 C 0.08 1.13 1.81 29.85 0.05 1.18 16 4 H 0.12 0.84 6.85 -2.38 -0.02 0.83 16 5 O -0.39 -7.35 9.67 -130.41 -1.26 -8.61 16 6 C 0.02 0.16 10.45 113.37 1.19 1.35 16 7 C 0.50 11.03 7.02 87.66 0.62 11.64 16 8 O -0.57 -18.41 16.04 15.55 0.25 -18.16 16 9 N -0.61 -10.63 3.02 -817.32 -2.47 -13.10 16 10 C 0.07 0.63 5.85 86.35 0.51 1.14 16 11 C 0.04 0.56 6.99 72.08 0.50 1.07 16 12 O -0.39 -8.50 9.73 -148.98 -1.45 -9.95 16 13 C 0.09 2.05 3.05 30.69 0.09 2.15 16 14 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 15 C 0.07 1.70 5.42 86.30 0.47 2.17 16 16 N -0.68 -22.62 6.13 -517.93 -3.17 -25.79 16 17 C 0.06 2.26 6.17 85.56 0.53 2.79 16 18 C 0.44 21.37 7.82 87.66 0.69 22.05 16 19 O -0.62 -35.56 15.78 -3.04 -0.05 -35.61 16 20 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 21 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.06 13.05 21.66 0.28 -49.77 16 25 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 C 0.09 1.74 5.94 86.35 0.51 2.26 16 30 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.44 6.18 -2.39 -0.01 0.43 16 33 H 0.09 0.76 6.08 -2.39 -0.01 0.75 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.38 8.03 -2.39 -0.02 0.36 16 37 H 0.07 0.35 6.09 -2.39 -0.01 0.34 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 0.49 4.47 -2.39 -0.01 0.47 16 40 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.35 12.59 7.83 -89.69 -0.70 11.89 16 45 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.40 19.62 7.90 -92.71 -0.73 18.88 16 48 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 49 H 0.09 2.04 7.07 -2.38 -0.02 2.03 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -81.09 401.51 -0.67 -81.77 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.46 Total: 38.14 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 7.26 Total: 27.29 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.98 Total: -120.22 kcal Atomic # 8 Polarization: -69.82 SS G_CDS: -2.51 Total: -72.33 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -81.09 -0.67 -81.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754996354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.529 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds