Wall clock time and date at job start Wed Apr 1 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47325 * 2 1 4 4 C 1.53002 * 109.47093 * 119.99393 * 2 1 3 5 5 C 1.52999 * 109.47262 * 184.99934 * 4 2 1 6 6 C 1.52999 * 109.47278 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.47096 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99656 * 179.97438 * 7 6 5 9 9 C 1.50712 * 109.46800 * 179.97438 * 8 7 6 10 10 O 1.21292 * 119.99687 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99728 * 179.97438 * 9 8 7 12 12 C 1.37093 * 119.99887 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00078 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00302 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99804 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00438 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46599 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47018 * 120.00085 * 16 14 12 19 19 H 1.48493 * 109.47240 * 240.00404 * 16 14 12 20 20 N 1.46499 * 109.47451 * 239.99935 * 2 1 3 21 21 C 1.34773 * 119.99925 * 84.99773 * 20 2 1 22 22 O 1.21273 * 120.00420 * 0.02562 * 21 20 2 23 23 C 1.50707 * 119.99927 * 180.02562 * 21 20 2 24 24 H 1.09004 * 109.57675 * 305.16580 * 23 21 20 25 25 C 1.53139 * 109.52540 * 65.32244 * 23 21 20 26 26 O 1.43076 * 109.15033 * 175.21322 * 25 23 21 27 27 C 1.43075 * 113.59304 * 302.05127 * 26 25 23 28 28 C 1.53136 * 109.15060 * 57.95480 * 27 26 25 29 29 O 1.43073 * 109.15120 * 304.68342 * 28 27 26 30 30 H 1.09006 * 109.46840 * 60.00271 * 1 2 3 31 31 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47379 * 300.00244 * 1 2 3 33 33 H 1.08997 * 109.47143 * 305.00278 * 4 2 1 34 34 H 1.09004 * 109.46404 * 65.00228 * 4 2 1 35 35 H 1.09001 * 109.47328 * 300.00753 * 5 4 2 36 36 H 1.09004 * 109.46848 * 60.00053 * 5 4 2 37 37 H 1.08997 * 109.46684 * 300.00072 * 6 5 4 38 38 H 1.08997 * 109.47220 * 60.00123 * 6 5 4 39 39 H 1.00904 * 111.00011 * 303.94722 * 7 6 5 40 40 H 1.08995 * 109.47421 * 299.99250 * 8 7 6 41 41 H 1.08992 * 109.47399 * 60.00274 * 8 7 6 42 42 H 0.97006 * 119.99933 * 0.02562 * 11 9 8 43 43 H 0.97003 * 120.00233 * 180.02562 * 15 14 12 44 44 H 0.96999 * 120.00107 * 265.00351 * 20 2 1 45 45 H 1.08995 * 109.53153 * 295.12016 * 25 23 21 46 46 H 1.09008 * 109.52198 * 55.31396 * 25 23 21 47 47 H 1.08993 * 109.52477 * 298.04856 * 27 26 25 48 48 H 1.09003 * 109.52184 * 177.85254 * 27 26 25 49 49 H 1.08995 * 109.52774 * 184.78273 * 28 27 26 50 50 H 1.09007 * 109.58083 * 64.61648 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3349 2.5628 7 7 5.5388 -1.2307 2.6250 8 6 6.0650 -1.9133 3.8145 9 6 7.5665 -1.7859 3.8437 10 8 8.1414 -1.1859 2.9602 11 7 8.2701 -2.3387 4.8515 12 6 9.6359 -2.2233 4.8779 13 1 10.1480 -1.6890 4.0912 14 6 10.3614 -2.7927 5.9171 15 7 9.7384 -3.4423 6.8746 16 14 12.2225 -2.6361 5.9527 17 1 12.6769 -1.8636 4.7685 18 1 12.6363 -1.9303 7.1920 19 1 12.8338 -3.9891 5.9260 20 7 2.0184 -0.6906 -1.1961 21 6 2.1471 -0.0183 -2.3571 22 8 1.8591 1.1585 -2.4115 23 6 2.6490 -0.7289 -3.5877 24 1 3.6078 -1.2003 -3.3717 25 6 1.6369 -1.7977 -4.0101 26 8 2.0656 -2.3901 -5.2399 27 6 2.2251 -1.4477 -6.3045 28 6 3.2372 -0.3790 -5.8821 29 8 2.8085 0.2135 -4.6524 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6053 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2056 35 1 3.9995 -1.0727 0.4261 36 1 3.8531 0.4371 1.3574 37 1 3.6402 -0.8756 3.4506 38 1 3.7865 -2.3851 2.5188 39 1 5.9631 -1.5913 1.7834 40 1 5.6440 -1.4580 4.7108 41 1 5.7909 -2.9676 3.7794 42 1 7.8102 -2.8189 5.5579 43 1 10.2448 -3.8396 7.6003 44 1 2.2491 -1.6318 -1.1526 45 1 1.5738 -2.5650 -3.2386 46 1 0.6582 -1.3380 -4.1489 47 1 1.2663 -0.9764 -6.5205 48 1 2.5881 -1.9617 -7.1946 49 1 3.3003 0.3883 -6.6536 50 1 4.2164 -0.8377 -5.7435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755497080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:26 Heat of formation + Delta-G solvation = -170.379382 kcal Electronic energy + Delta-G solvation = -29489.193917 eV Core-core repulsion = 25130.272969 eV Total energy + Delta-G solvation = -4358.920947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96349 -39.54052 -38.32533 -37.19672 -36.43996 -35.49973 -33.90120 -33.12960 -31.93206 -31.21423 -30.51668 -28.52141 -27.34548 -25.61975 -25.11452 -23.57986 -22.64302 -21.60169 -21.28799 -20.82711 -19.21364 -18.12880 -17.88077 -17.50234 -17.12168 -16.57835 -16.34507 -16.02526 -15.90847 -15.63224 -15.24955 -14.89080 -14.63168 -14.48220 -14.27639 -14.00423 -13.89472 -13.67584 -13.57147 -13.29433 -13.13810 -12.82377 -12.62672 -12.48806 -12.16641 -11.95021 -11.83652 -11.57672 -11.45983 -11.36797 -11.34998 -11.13539 -11.07072 -10.92432 -10.80037 -10.34433 -10.22561 -10.10521 -9.71829 -9.52334 -9.46458 -8.46330 -8.05515 -7.95996 -6.42102 -3.82834 2.17987 2.35405 3.10720 3.16200 3.26748 3.34249 3.43703 3.90647 3.94836 4.03121 4.19322 4.26605 4.35476 4.41514 4.54558 4.56641 4.69101 4.73208 4.77266 4.87063 4.99983 5.04127 5.12219 5.19665 5.22738 5.23266 5.24485 5.27365 5.40553 5.47027 5.52331 5.66151 5.70317 5.78965 5.87221 5.98188 6.02170 6.13324 6.19368 6.28123 6.33842 6.39815 7.07511 7.23124 7.55225 7.66561 7.82544 8.06494 8.61134 9.17823 9.54182 10.05717 10.75723 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.001668 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.175994 B =16780.119484 C =18124.920572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.092 0.908 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.720 5.720 21 C 0.524 3.476 22 O -0.513 6.513 23 C 0.035 3.965 24 H 0.097 0.903 25 C 0.039 3.961 26 O -0.373 6.373 27 C 0.021 3.979 28 C 0.022 3.978 29 O -0.350 6.350 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.348 0.652 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.400 0.600 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.205 -0.022 -19.630 29.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.374 5.374 21 C 0.308 3.692 22 O -0.386 6.386 23 C -0.026 4.026 24 H 0.114 0.886 25 C -0.039 4.039 26 O -0.291 6.291 27 C -0.056 4.056 28 C -0.055 4.055 29 O -0.268 6.268 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.235 0.765 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.127 0.873 49 H 0.130 0.870 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.944 1.792 -19.799 29.610 hybrid contribution 0.716 -1.727 0.357 1.903 sum -21.228 0.065 -19.443 28.786 Atomic orbital electron populations 1.22184 0.95094 1.02166 1.02761 1.21055 0.93888 0.97899 0.83274 0.88981 1.21882 0.96378 1.00988 0.97099 1.21569 0.93893 1.02383 0.97744 1.21972 0.88811 0.97782 0.98461 1.60052 1.03666 1.61137 1.05448 1.21667 0.95208 0.96613 0.94683 1.19837 0.88064 0.84717 0.84805 1.90524 1.71149 1.45933 1.39120 1.41874 1.07425 1.48442 1.22371 1.19762 0.81511 1.32704 1.08850 0.87865 1.25269 1.00724 0.96609 0.95414 1.69621 1.36607 1.36021 1.12101 0.85795 0.82203 0.77957 0.78363 1.19209 1.20733 1.20780 1.46011 1.67908 1.14087 1.09417 1.19873 0.78176 0.87345 0.83792 1.90746 1.47943 1.15439 1.84501 1.22608 1.00711 0.90979 0.88332 0.88551 1.23127 0.96580 0.96182 0.87999 1.88137 1.88544 1.33135 1.19287 1.23339 0.99646 0.91825 0.90813 1.23371 0.97444 0.97597 0.87040 1.88239 1.88580 1.31395 1.18589 0.92145 0.92394 0.91304 0.89867 0.91302 0.92052 0.90671 0.91145 0.95736 0.83291 0.89635 0.93974 0.77465 0.91937 0.76511 0.87133 0.91408 0.91772 0.87264 0.87030 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.48 37.16 0.35 -0.74 16 2 C 0.14 1.08 2.57 -67.93 -0.17 0.90 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 4 C -0.13 -0.83 4.75 -26.73 -0.13 -0.96 16 5 C -0.12 -1.11 5.36 -26.73 -0.14 -1.26 16 6 C 0.06 0.68 5.68 -3.83 -0.02 0.65 16 7 N -0.67 -10.77 6.13 -115.06 -0.70 -11.48 16 8 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 9 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 10 O -0.58 -16.06 15.78 5.55 0.09 -15.97 16 11 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 12 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 13 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 16 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 N -0.72 -5.12 4.50 -53.81 -0.24 -5.36 16 21 C 0.52 5.28 7.14 -10.98 -0.08 5.20 16 22 O -0.51 -7.46 16.17 -14.25 -0.23 -7.69 16 23 C 0.04 0.30 3.25 -27.81 -0.09 0.21 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 25 C 0.04 0.25 6.29 37.23 0.23 0.49 16 26 O -0.37 -2.88 10.85 -48.80 -0.53 -3.41 16 27 C 0.02 0.12 7.05 37.23 0.26 0.38 16 28 C 0.02 0.15 7.05 37.23 0.26 0.41 16 29 O -0.35 -3.67 10.03 -62.51 -0.63 -4.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.40 1.81 8.54 -40.82 -0.35 1.46 16 45 H 0.11 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 414.50 15.07 6.25 6.25 Total: -1.00 -36.15 414.50 -8.73 -44.88 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.49 Total: 10.79 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 0.12 Total: 8.52 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.28 Total: -55.15 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.30 Total: -31.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.15 -8.73 -44.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755497080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.502 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds