Wall clock time and date at job start Wed Apr 1 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47325 * 2 1 4 4 C 1.53002 * 109.47093 * 119.99393 * 2 1 3 5 5 C 1.52999 * 109.47262 * 184.99934 * 4 2 1 6 6 C 1.52999 * 109.47278 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.47096 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99656 * 179.97438 * 7 6 5 9 9 C 1.50712 * 109.46800 * 179.97438 * 8 7 6 10 10 O 1.21292 * 119.99687 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99728 * 179.97438 * 9 8 7 12 12 C 1.37093 * 119.99887 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00078 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00302 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99804 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00438 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46599 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47018 * 120.00085 * 16 14 12 19 19 H 1.48493 * 109.47240 * 240.00404 * 16 14 12 20 20 N 1.46499 * 109.47451 * 239.99935 * 2 1 3 21 21 C 1.34773 * 119.99925 * 84.99773 * 20 2 1 22 22 O 1.21273 * 120.00420 * 0.02562 * 21 20 2 23 23 C 1.50707 * 119.99927 * 180.02562 * 21 20 2 24 24 H 1.09004 * 109.57675 * 305.16580 * 23 21 20 25 25 C 1.53139 * 109.52540 * 65.32244 * 23 21 20 26 26 O 1.43076 * 109.15033 * 175.21322 * 25 23 21 27 27 C 1.43075 * 113.59304 * 302.05127 * 26 25 23 28 28 C 1.53136 * 109.15060 * 57.95480 * 27 26 25 29 29 O 1.43073 * 109.15120 * 304.68342 * 28 27 26 30 30 H 1.09006 * 109.46840 * 60.00271 * 1 2 3 31 31 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47379 * 300.00244 * 1 2 3 33 33 H 1.08997 * 109.47143 * 305.00278 * 4 2 1 34 34 H 1.09004 * 109.46404 * 65.00228 * 4 2 1 35 35 H 1.09001 * 109.47328 * 300.00753 * 5 4 2 36 36 H 1.09004 * 109.46848 * 60.00053 * 5 4 2 37 37 H 1.08997 * 109.46684 * 300.00072 * 6 5 4 38 38 H 1.08997 * 109.47220 * 60.00123 * 6 5 4 39 39 H 1.00904 * 111.00011 * 303.94722 * 7 6 5 40 40 H 1.08995 * 109.47421 * 299.99250 * 8 7 6 41 41 H 1.08992 * 109.47399 * 60.00274 * 8 7 6 42 42 H 0.97006 * 119.99933 * 0.02562 * 11 9 8 43 43 H 0.97003 * 120.00233 * 180.02562 * 15 14 12 44 44 H 0.96999 * 120.00107 * 265.00351 * 20 2 1 45 45 H 1.08995 * 109.53153 * 295.12016 * 25 23 21 46 46 H 1.09008 * 109.52198 * 55.31396 * 25 23 21 47 47 H 1.08993 * 109.52477 * 298.04856 * 27 26 25 48 48 H 1.09003 * 109.52184 * 177.85254 * 27 26 25 49 49 H 1.08995 * 109.52774 * 184.78273 * 28 27 26 50 50 H 1.09007 * 109.58083 * 64.61648 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3349 2.5628 7 7 5.5388 -1.2307 2.6250 8 6 6.0650 -1.9133 3.8145 9 6 7.5665 -1.7859 3.8437 10 8 8.1414 -1.1859 2.9602 11 7 8.2701 -2.3387 4.8515 12 6 9.6359 -2.2233 4.8779 13 1 10.1480 -1.6890 4.0912 14 6 10.3614 -2.7927 5.9171 15 7 9.7384 -3.4423 6.8746 16 14 12.2225 -2.6361 5.9527 17 1 12.6769 -1.8636 4.7685 18 1 12.6363 -1.9303 7.1920 19 1 12.8338 -3.9891 5.9260 20 7 2.0184 -0.6906 -1.1961 21 6 2.1471 -0.0183 -2.3571 22 8 1.8591 1.1585 -2.4115 23 6 2.6490 -0.7289 -3.5877 24 1 3.6078 -1.2003 -3.3717 25 6 1.6369 -1.7977 -4.0101 26 8 2.0656 -2.3901 -5.2399 27 6 2.2251 -1.4477 -6.3045 28 6 3.2372 -0.3790 -5.8821 29 8 2.8085 0.2135 -4.6524 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6053 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2056 35 1 3.9995 -1.0727 0.4261 36 1 3.8531 0.4371 1.3574 37 1 3.6402 -0.8756 3.4506 38 1 3.7865 -2.3851 2.5188 39 1 5.9631 -1.5913 1.7834 40 1 5.6440 -1.4580 4.7108 41 1 5.7909 -2.9676 3.7794 42 1 7.8102 -2.8189 5.5579 43 1 10.2448 -3.8396 7.6003 44 1 2.2491 -1.6318 -1.1526 45 1 1.5738 -2.5650 -3.2386 46 1 0.6582 -1.3380 -4.1489 47 1 1.2663 -0.9764 -6.5205 48 1 2.5881 -1.9617 -7.1946 49 1 3.3003 0.3883 -6.6536 50 1 4.2164 -0.8377 -5.7435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755497080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:25 Heat of formation + Delta-G solvation = -199.346312 kcal Electronic energy + Delta-G solvation = -29490.450017 eV Core-core repulsion = 25130.272969 eV Total energy + Delta-G solvation = -4360.177047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62630 -40.23417 -40.12400 -38.04775 -37.12126 -36.60558 -35.85591 -33.92765 -33.28432 -32.62247 -31.24744 -29.09470 -28.64492 -26.67669 -26.13977 -24.88954 -23.27707 -22.41622 -21.95318 -21.53488 -21.03839 -19.90818 -18.78373 -18.16124 -17.82032 -17.69574 -17.17763 -17.04738 -16.74738 -16.49338 -16.47961 -16.02292 -15.89274 -15.60632 -15.43373 -15.19714 -15.01882 -14.61922 -14.37068 -14.18626 -14.08672 -13.96930 -13.52261 -13.34253 -13.21544 -13.06881 -12.97446 -12.76230 -12.66627 -12.42101 -12.38518 -12.14624 -12.09219 -11.95574 -11.70915 -11.63807 -11.55905 -11.51562 -10.86942 -10.36534 -10.31899 -10.15241 -10.02367 -9.28708 -8.47686 -5.96443 1.36132 1.41584 1.42105 1.55785 1.72928 2.04296 2.28829 2.61747 2.87285 2.93446 3.19574 3.39896 3.50418 3.61937 3.81403 3.81821 3.92869 4.07525 4.08780 4.11310 4.22127 4.31854 4.37246 4.44082 4.44691 4.50554 4.51341 4.58399 4.66619 4.72543 4.75426 4.77028 4.84343 4.87809 4.93623 5.09424 5.25307 5.31333 5.40218 5.42640 5.52312 5.82464 5.85367 5.91012 6.14033 6.43958 6.46358 6.59499 7.11938 7.13839 7.55426 8.11016 8.69852 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.001668 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.175994 B =16780.119484 C =18124.920572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.061 3.939 7 N -0.692 5.692 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.275 1.275 18 H -0.271 1.271 19 H -0.269 1.269 20 N -0.703 5.703 21 C 0.522 3.478 22 O -0.567 6.567 23 C 0.035 3.965 24 H 0.108 0.892 25 C 0.044 3.956 26 O -0.385 6.385 27 C 0.019 3.981 28 C 0.017 3.983 29 O -0.386 6.386 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.342 0.658 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.416 0.584 45 H 0.138 0.862 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.133 0.867 49 H 0.125 0.875 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.177 -1.965 -19.218 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.067 4.067 7 N -0.324 5.324 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.513 6.513 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.095 0.905 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.194 1.194 20 N -0.358 5.358 21 C 0.307 3.693 22 O -0.445 6.445 23 C -0.026 4.026 24 H 0.126 0.874 25 C -0.034 4.034 26 O -0.304 6.304 27 C -0.057 4.057 28 C -0.059 4.059 29 O -0.305 6.305 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.161 0.839 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.156 0.844 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.151 0.849 49 H 0.143 0.857 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.947 -0.208 -19.355 30.021 hybrid contribution 0.997 -1.101 0.203 1.499 sum -21.951 -1.309 -19.153 29.161 Atomic orbital electron populations 1.22119 0.93979 1.03244 1.02193 1.21033 0.94691 0.96667 0.83799 0.91997 1.21793 0.93977 1.02475 0.96716 1.21505 0.95929 1.00557 0.97066 1.22074 0.85770 0.99409 0.99461 1.60064 1.06446 1.61361 1.04537 1.21526 0.90211 0.98652 0.96231 1.20980 0.90724 0.82763 0.83250 1.90491 1.72887 1.47397 1.40484 1.41940 1.06869 1.49063 1.23147 1.19699 0.83089 1.34341 1.09299 0.90462 1.26041 1.04935 0.95696 0.94597 1.69673 1.38218 1.35837 1.12281 0.84869 0.76859 0.78348 0.78244 1.19927 1.19608 1.19437 1.45919 1.66603 1.14701 1.08535 1.20272 0.77386 0.86788 0.84861 1.90717 1.50594 1.17771 1.85403 1.22708 1.01718 0.90869 0.87337 0.87427 1.23191 0.95476 0.96244 0.88470 1.88116 1.88557 1.33893 1.19816 1.23476 0.99520 0.91606 0.91103 1.23588 0.97844 0.98337 0.86139 1.88190 1.88973 1.33250 1.20081 0.94320 0.90394 0.90332 0.88826 0.88690 0.92001 0.93194 0.90512 0.93452 0.83920 0.87907 0.91315 0.76891 0.91260 0.74615 0.84424 0.91994 0.91767 0.84949 0.85682 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 71.98 0.68 -1.18 16 2 C 0.14 2.01 2.57 44.99 0.12 2.12 16 3 H 0.06 1.28 7.58 -2.39 -0.02 1.27 16 4 C -0.11 -1.18 4.75 30.59 0.15 -1.04 16 5 C -0.11 -1.94 5.36 30.59 0.16 -1.78 16 6 C 0.06 1.23 5.68 86.30 0.49 1.72 16 7 N -0.69 -21.29 6.13 -517.94 -3.17 -24.47 16 8 C 0.07 2.22 6.17 85.56 0.53 2.75 16 9 C 0.44 20.84 7.82 87.66 0.69 21.53 16 10 O -0.63 -35.28 15.78 -3.07 -0.05 -35.32 16 11 N -0.57 -29.49 5.29 -306.98 -1.62 -31.12 16 12 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 15 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 16 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 N -0.70 -9.26 4.50 -442.54 -1.99 -11.25 16 21 C 0.52 10.65 7.14 87.66 0.63 11.28 16 22 O -0.57 -17.47 16.17 15.93 0.26 -17.21 16 23 C 0.04 0.58 3.25 29.90 0.10 0.68 16 24 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 25 C 0.04 0.52 6.29 72.03 0.45 0.97 16 26 O -0.39 -5.40 10.85 -136.00 -1.48 -6.87 16 27 C 0.02 0.20 7.05 72.03 0.51 0.71 16 28 C 0.02 0.22 7.05 72.03 0.51 0.73 16 29 O -0.39 -8.28 10.03 -122.90 -1.23 -9.51 16 30 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 1.05 7.75 -2.39 -0.02 1.03 16 36 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.34 11.08 8.43 -89.69 -0.76 10.32 16 40 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 43 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.42 2.77 8.54 -92.71 -0.79 1.97 16 45 H 0.14 0.79 8.08 -2.39 -0.02 0.77 16 46 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -81.10 414.50 -2.01 -83.11 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -1.32 Total: 36.79 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.28 Total: 19.94 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.50 Total: -115.96 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -2.50 Total: -68.92 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -81.10 -2.01 -83.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755497080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.237 kcal (2) G-P(sol) polarization free energy of solvation -81.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds