Wall clock time and date at job start Wed Apr 1 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99542 * 2 1 4 4 C 1.53001 * 109.47181 * 270.00222 * 3 2 1 5 5 H 1.09003 * 109.46998 * 60.00200 * 4 3 2 6 6 O 1.42901 * 109.47351 * 300.00440 * 4 3 2 7 7 C 1.53004 * 109.47064 * 180.02562 * 4 3 2 8 8 N 1.46895 * 109.46701 * 185.00074 * 7 4 3 9 9 C 1.46906 * 110.99415 * 180.02562 * 8 7 4 10 10 C 1.50707 * 109.46817 * 179.97438 * 9 8 7 11 11 O 1.21289 * 120.00291 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99898 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00311 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99547 * 0.02562 * 13 12 10 15 15 C 1.38941 * 120.00342 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00503 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00189 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47399 * 90.00027 * 17 15 13 19 19 H 1.48504 * 109.47404 * 210.00446 * 17 15 13 20 20 H 1.48499 * 109.46698 * 330.00057 * 17 15 13 21 21 C 1.34768 * 120.00273 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00299 * 179.97438 * 21 2 1 23 23 C 1.50708 * 120.00019 * 359.97438 * 21 2 1 24 24 H 1.09001 * 109.48936 * 54.97343 * 23 21 2 25 25 C 1.53096 * 109.47967 * 294.94486 * 23 21 2 26 26 C 1.53180 * 109.16300 * 182.40657 * 25 23 21 27 27 C 1.53180 * 109.03380 * 56.98167 * 26 25 23 28 28 C 1.53093 * 109.16207 * 303.01706 * 27 26 25 29 29 O 1.42905 * 109.41479 * 57.61537 * 28 27 26 30 30 H 1.09004 * 109.46779 * 269.99484 * 1 2 3 31 31 H 1.08996 * 109.47794 * 29.99821 * 1 2 3 32 32 H 1.09004 * 109.47418 * 149.99991 * 1 2 3 33 33 H 1.08997 * 109.47228 * 30.00559 * 3 2 1 34 34 H 1.08996 * 109.46683 * 150.00557 * 3 2 1 35 35 H 0.96699 * 113.99657 * 300.00451 * 6 4 3 36 36 H 1.08997 * 109.47152 * 305.00187 * 7 4 3 37 37 H 1.08996 * 109.46876 * 64.99845 * 7 4 3 38 38 H 1.00894 * 111.00322 * 56.05147 * 8 7 4 39 39 H 1.09000 * 109.47221 * 299.99777 * 9 8 7 40 40 H 1.08993 * 109.47398 * 59.99706 * 9 8 7 41 41 H 0.97002 * 120.00016 * 0.02562 * 12 10 9 42 42 H 0.96998 * 120.00891 * 179.97438 * 16 15 13 43 43 H 1.09001 * 109.52258 * 302.31417 * 25 23 21 44 44 H 1.09004 * 109.52122 * 62.50146 * 25 23 21 45 45 H 1.08996 * 109.54294 * 297.11731 * 26 25 23 46 46 H 1.08991 * 109.61523 * 176.89367 * 26 25 23 47 47 H 1.09000 * 109.52369 * 183.11217 * 27 26 25 48 48 H 1.08994 * 109.52239 * 62.92462 * 27 26 25 49 49 H 1.09000 * 109.48469 * 297.62848 * 28 27 26 50 50 H 1.09009 * 109.48868 * 177.59383 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 1 1.4999 1.8409 -1.9563 6 8 3.2246 0.7147 -2.1163 7 6 3.2178 3.0353 -1.4425 8 7 3.3580 3.5198 -2.8221 9 6 4.0903 4.7927 -2.8612 10 6 4.2146 5.2571 -4.2895 11 8 3.7404 4.5928 -5.1867 12 7 4.8528 6.4105 -4.5700 13 6 4.9664 6.8327 -5.8693 14 1 4.5441 6.2412 -6.6682 15 6 5.6248 8.0216 -6.1585 16 7 5.7333 8.4266 -7.4039 17 14 6.3559 9.0445 -4.7769 18 1 7.7569 8.6173 -4.5326 19 1 6.3353 10.4794 -5.1589 20 1 5.5564 8.8499 -3.5407 21 6 2.1389 -1.1671 -0.0005 22 8 3.3517 -1.1671 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 1 0.6925 -2.4922 -0.8417 25 6 0.6035 -2.6104 1.3084 26 6 -0.1111 -3.9652 1.3267 27 6 0.9253 -5.0790 1.1483 28 6 1.6947 -4.8456 -0.1544 29 8 2.3095 -3.5560 -0.1184 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5139 34 1 3.1498 1.1385 0.5137 35 1 4.0871 0.5462 -1.7127 36 1 2.6708 3.7710 -0.8529 37 1 4.2060 2.8839 -1.0083 38 1 2.4572 3.6067 -3.2682 39 1 3.5497 5.5408 -2.2813 40 1 5.0845 4.6531 -2.4370 41 1 5.2324 6.9417 -3.8525 42 1 6.1926 9.2567 -7.6058 43 1 1.2914 -2.5500 2.1518 44 1 -0.1324 -1.8094 1.3793 45 1 -0.8348 -4.0067 0.5128 46 1 -0.6254 -4.0948 2.2789 47 1 0.4195 -6.0436 1.1048 48 1 1.6196 -5.0685 1.9884 49 1 1.0059 -4.8965 -0.9977 50 1 2.4626 -5.6112 -0.2655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755776161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:03 Heat of formation + Delta-G solvation = -187.970647 kcal Electronic energy + Delta-G solvation = -30213.626687 eV Core-core repulsion = 25853.942925 eV Total energy + Delta-G solvation = -4359.683762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53074 -40.34443 -39.75760 -38.49776 -36.58561 -36.18343 -35.61034 -34.57287 -33.75772 -32.77772 -31.26563 -29.02453 -27.77771 -27.09358 -25.84147 -24.84701 -24.21836 -22.68321 -21.35829 -21.28269 -20.54679 -20.27787 -18.44514 -18.17218 -17.67755 -17.35515 -17.03449 -16.90227 -16.68869 -16.66365 -16.10772 -15.94968 -15.61949 -15.44783 -15.17461 -14.99857 -14.96283 -14.73854 -14.44510 -14.32618 -14.07178 -13.78547 -13.61902 -13.51069 -13.26809 -13.17057 -13.01138 -12.79440 -12.59920 -12.50666 -12.41875 -12.12051 -12.01028 -11.97979 -11.93168 -11.52692 -11.37604 -11.19113 -10.66138 -10.47586 -10.42283 -10.25893 -9.57487 -9.26453 -8.41999 -6.03425 1.29434 1.35908 1.44466 1.55350 1.76492 1.94640 2.22754 2.69295 2.93616 3.14066 3.33385 3.45596 3.66688 3.75564 3.84009 3.87252 3.97070 4.01114 4.12008 4.12300 4.19206 4.20071 4.31934 4.39015 4.45997 4.47625 4.52567 4.59377 4.64598 4.70414 4.74932 4.75734 4.85500 4.90760 5.04110 5.08687 5.10409 5.15487 5.34972 5.45208 5.51990 5.89313 6.04250 6.08722 6.36677 6.37537 6.59084 6.85771 6.87113 7.17818 7.38593 7.95916 8.75787 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.001644 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.902892 B =17028.280065 C =17250.130719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.605 5.605 3 C 0.089 3.911 4 C 0.096 3.904 5 H 0.095 0.905 6 O -0.567 6.567 7 C 0.035 3.965 8 N -0.685 5.685 9 C 0.064 3.936 10 C 0.446 3.554 11 O -0.616 6.616 12 N -0.590 5.590 13 C -0.332 4.332 14 H 0.053 0.947 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.229 1.229 21 C 0.516 3.484 22 O -0.565 6.565 23 C 0.075 3.925 24 H 0.096 0.904 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.157 4.157 28 C 0.050 3.950 29 O -0.394 6.394 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.376 0.624 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.343 0.657 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.168 -20.775 29.047 39.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.338 5.338 3 C -0.034 4.034 4 C 0.036 3.964 5 H 0.113 0.887 6 O -0.372 6.372 7 C -0.095 4.095 8 N -0.318 5.318 9 C -0.068 4.068 10 C 0.234 3.766 11 O -0.501 6.501 12 N -0.232 5.232 13 C -0.461 4.461 14 H 0.071 0.929 15 C -0.214 4.214 16 N -0.575 5.575 17 Si 0.787 3.213 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.152 1.152 21 C 0.304 3.696 22 O -0.443 6.443 23 C 0.014 3.986 24 H 0.113 0.887 25 C -0.183 4.183 26 C -0.156 4.156 27 C -0.194 4.194 28 C -0.026 4.026 29 O -0.313 6.313 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.223 0.777 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.565 -21.450 27.779 38.394 hybrid contribution 0.400 1.335 0.313 1.428 sum -15.165 -20.115 28.093 37.733 Atomic orbital electron populations 1.22304 0.77027 1.04868 1.03730 1.47644 1.08356 1.04722 1.73075 1.22201 0.99065 0.85721 0.96421 1.22379 0.94702 0.86479 0.92886 0.88700 1.86568 1.33523 1.59559 1.57571 1.22674 1.01646 0.96595 0.88568 1.59893 1.25407 1.28552 1.17950 1.21631 1.01935 0.91901 0.91366 1.21063 0.81624 0.81503 0.92407 1.90552 1.52409 1.56885 1.50214 1.42017 1.52326 1.21614 1.07225 1.19014 1.36135 1.06790 0.84160 0.92911 1.26147 0.97193 0.97912 1.00140 1.69807 1.43236 1.23879 1.20588 0.85332 0.79650 0.77796 0.78508 1.18322 1.19865 1.15228 1.20624 0.87617 0.85938 0.75399 1.90650 1.15881 1.87623 1.50136 1.21994 0.90829 0.85351 1.00428 0.88703 1.22278 0.99923 1.00927 0.95131 1.21622 0.97478 0.92380 1.04115 1.22212 0.98780 1.00652 0.97769 1.22883 0.98303 0.83554 0.97819 1.88027 1.33708 1.14921 1.94639 0.89603 0.89324 0.90059 0.85827 0.90494 0.77661 0.91381 0.90082 0.83810 0.90034 0.87136 0.77398 0.91107 0.92163 0.87334 0.90050 0.89385 0.88646 0.92024 0.91865 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 8.92 127.77 1.14 1.51 16 2 N -0.60 -9.02 2.83 -846.75 -2.39 -11.42 16 3 C 0.09 1.28 5.15 86.38 0.44 1.73 16 4 C 0.10 1.92 3.42 30.60 0.10 2.02 16 5 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 6 O -0.57 -16.58 12.09 -140.57 -1.70 -18.28 16 7 C 0.03 0.68 5.32 86.31 0.46 1.14 16 8 N -0.69 -20.79 6.07 -517.93 -3.15 -23.93 16 9 C 0.06 1.97 6.17 85.56 0.53 2.50 16 10 C 0.45 20.76 7.82 87.66 0.69 21.45 16 11 O -0.62 -35.63 15.78 -3.06 -0.05 -35.68 16 12 N -0.59 -28.41 5.09 -306.99 -1.56 -29.98 16 13 C -0.33 -19.89 10.16 84.04 0.85 -19.04 16 14 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 15 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 16 N -0.93 -57.15 13.96 21.66 0.30 -56.85 16 17 Si 0.97 39.12 27.74 68.60 1.90 41.03 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 21 C 0.52 11.48 6.61 87.66 0.58 12.06 16 22 O -0.56 -17.93 14.87 21.61 0.32 -17.61 16 23 C 0.07 1.26 2.24 29.88 0.07 1.33 16 24 H 0.10 1.28 7.13 -2.39 -0.02 1.27 16 25 C -0.14 -1.42 5.12 30.69 0.16 -1.26 16 26 C -0.12 -0.74 6.03 30.71 0.19 -0.56 16 27 C -0.16 -1.38 6.14 30.69 0.19 -1.20 16 28 C 0.05 0.69 6.84 72.01 0.49 1.18 16 29 O -0.39 -8.94 9.94 -130.00 -1.29 -10.23 16 30 H 0.09 0.13 7.07 -2.38 -0.02 0.11 16 31 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 32 H 0.08 0.37 6.06 -2.38 -0.01 0.36 16 33 H 0.12 0.86 8.07 -2.39 -0.02 0.84 16 34 H 0.08 1.35 7.42 -2.39 -0.02 1.33 16 35 H 0.38 10.71 8.45 -74.06 -0.63 10.08 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.34 11.11 8.43 -89.70 -0.76 10.35 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 0.48 5.18 -2.39 -0.01 0.47 16 45 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 47 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 50 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -92.64 399.58 -2.26 -94.90 By element: Atomic # 1 Polarization: 46.58 SS G_CDS: -1.00 Total: 45.58 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 6.35 Total: 22.47 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -6.80 Total: -122.17 kcal Atomic # 8 Polarization: -79.09 SS G_CDS: -2.72 Total: -81.81 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.03 kcal Total: -92.64 -2.26 -94.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755776161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.067 kcal (2) G-P(sol) polarization free energy of solvation -92.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds