Wall clock time and date at job start Wed Apr 1 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99685 * 2 1 4 4 C 1.52999 * 109.47290 * 90.00137 * 3 2 1 5 5 H 1.08999 * 109.46603 * 304.99133 * 4 3 2 6 6 O 1.42892 * 109.47413 * 64.99480 * 4 3 2 7 7 C 1.53000 * 109.46978 * 185.00094 * 4 3 2 8 8 N 1.46898 * 109.47250 * 179.97438 * 7 4 3 9 9 C 1.46899 * 111.00268 * 179.97438 * 8 7 4 10 10 C 1.50701 * 109.47060 * 179.97438 * 9 8 7 11 11 O 1.21289 * 120.00192 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99569 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99776 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00345 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00187 * 180.02562 * 13 12 10 16 16 N 1.31407 * 119.99795 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00097 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47072 * 90.00309 * 17 15 13 19 19 H 1.48496 * 109.47228 * 210.00157 * 17 15 13 20 20 H 1.48502 * 109.47268 * 330.00208 * 17 15 13 21 21 C 1.34775 * 120.00050 * 179.97438 * 2 1 3 22 22 O 1.21274 * 120.00061 * 184.79297 * 21 2 1 23 23 C 1.50708 * 120.00095 * 4.79151 * 21 2 1 24 24 H 1.08995 * 109.47952 * 45.30373 * 23 21 2 25 25 C 1.53091 * 109.47723 * 285.27306 * 23 21 2 26 26 C 1.53185 * 109.16086 * 182.40689 * 25 23 21 27 27 C 1.53177 * 109.03407 * 56.97980 * 26 25 23 28 28 C 1.53094 * 109.16431 * 303.02057 * 27 26 25 29 29 O 1.42893 * 109.48017 * 165.33076 * 23 21 2 30 30 H 1.08999 * 109.47355 * 84.87364 * 1 2 3 31 31 H 1.09006 * 109.47163 * 204.87169 * 1 2 3 32 32 H 1.09002 * 109.47386 * 324.87467 * 1 2 3 33 33 H 1.09001 * 109.47394 * 329.99332 * 3 2 1 34 34 H 1.09005 * 109.46768 * 210.00003 * 3 2 1 35 35 H 0.96698 * 114.00083 * 60.00404 * 6 4 3 36 36 H 1.08996 * 109.47613 * 59.99171 * 7 4 3 37 37 H 1.09004 * 109.46921 * 299.99687 * 7 4 3 38 38 H 1.00901 * 110.99815 * 303.95049 * 8 7 4 39 39 H 1.09001 * 109.46912 * 299.99846 * 9 8 7 40 40 H 1.08997 * 109.46955 * 60.00157 * 9 8 7 41 41 H 0.96998 * 120.00629 * 0.02562 * 12 10 9 42 42 H 0.97001 * 120.00337 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.52204 * 302.30625 * 25 23 21 44 44 H 1.08995 * 109.52641 * 62.50131 * 25 23 21 45 45 H 1.08996 * 109.54208 * 297.11693 * 26 25 23 46 46 H 1.08994 * 109.61496 * 176.88579 * 26 25 23 47 47 H 1.08998 * 109.52438 * 183.11225 * 27 26 25 48 48 H 1.09000 * 109.52632 * 62.92360 * 27 26 25 49 49 H 1.09006 * 109.48082 * 297.62585 * 28 27 26 50 50 H 1.09003 * 109.49018 * 177.59878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 1 1.5061 1.7550 1.9814 6 8 3.3208 0.7726 2.0814 7 6 3.1059 3.0939 1.4442 8 7 3.3502 3.5183 2.8292 9 6 3.9789 4.8453 2.8700 10 6 4.2130 5.2463 4.3037 11 8 3.8885 4.4999 5.2030 12 7 4.7839 6.4340 4.5866 13 6 4.9964 6.7991 5.8909 14 1 4.7067 6.1348 6.6917 15 6 5.5845 8.0237 6.1826 16 7 5.9365 8.8322 5.2083 17 14 5.8747 8.5208 7.9597 18 1 7.2168 8.0544 8.3913 19 1 5.8027 9.9993 8.0782 20 1 4.8352 7.9039 8.8224 21 6 2.1389 -1.1672 0.0005 22 8 3.3485 -1.1690 0.0883 23 6 1.3893 -2.4701 -0.1079 24 1 0.6366 -2.3922 -0.8923 25 6 0.7061 -2.7786 1.2269 26 6 -0.0033 -4.1326 1.1275 27 6 1.0187 -5.2044 0.7362 28 6 1.6899 -4.8022 -0.5796 29 8 2.3037 -3.5207 -0.4274 30 1 -0.3634 0.0918 -1.0235 31 1 -0.3634 -0.9324 0.4322 32 1 -0.3634 0.8405 0.5913 33 1 1.6084 2.0284 -0.5139 34 1 3.1499 1.1384 -0.5139 35 1 4.1835 0.6812 1.6543 36 1 2.4436 3.8093 0.9568 37 1 4.0523 3.0494 0.9052 38 1 2.4967 3.5055 3.3672 39 1 4.9316 4.8124 2.3414 40 1 3.3230 5.5730 2.3921 41 1 5.0438 7.0308 3.8675 42 1 6.3467 9.6873 5.4119 43 1 1.4541 -2.8165 2.0188 44 1 -0.0238 -2.0006 1.4509 45 1 -0.7848 -4.0801 0.3696 46 1 -0.4459 -4.3854 2.0910 47 1 0.5125 -6.1614 0.6092 48 1 1.7730 -5.2913 1.5182 49 1 0.9410 -4.7550 -1.3702 50 1 2.4486 -5.5399 -0.8413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755776163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:11 Heat of formation + Delta-G solvation = -159.116680 kcal Electronic energy + Delta-G solvation = -30255.668865 eV Core-core repulsion = 25897.236305 eV Total energy + Delta-G solvation = -4358.432560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81054 -39.10446 -38.29788 -37.40734 -35.67993 -34.65505 -34.04984 -33.73072 -32.14134 -31.20096 -30.29024 -27.82325 -27.08943 -25.89971 -24.69560 -24.17808 -23.13289 -21.71762 -20.84679 -19.81975 -19.20323 -17.86300 -17.70473 -17.21422 -16.66192 -16.28351 -16.12589 -15.92716 -15.56574 -15.24997 -14.95383 -14.76633 -14.64806 -14.41250 -14.38454 -14.02771 -13.69486 -13.54283 -13.32670 -13.22521 -13.09095 -12.80825 -12.62729 -12.41521 -12.01281 -11.90987 -11.77911 -11.58476 -11.50238 -11.46213 -11.45548 -11.05406 -11.00761 -10.86589 -10.36971 -10.20342 -10.16168 -9.96565 -9.75132 -9.47796 -8.83472 -8.39760 -7.99609 -7.92020 -6.38799 -3.79398 2.37049 2.38296 3.20454 3.28654 3.34730 3.51340 3.94406 4.02020 4.09065 4.27345 4.29817 4.33462 4.48106 4.48287 4.56641 4.59457 4.64635 4.80978 4.89155 4.92442 5.01521 5.06789 5.09064 5.14294 5.16527 5.25677 5.27794 5.32109 5.32335 5.42920 5.46319 5.56407 5.58875 5.63070 5.81076 5.82270 5.98999 6.00768 6.09928 6.29713 6.67924 7.04888 7.23161 7.58218 7.67555 7.90548 7.98794 8.09745 8.64897 9.21232 9.57710 10.09671 10.79055 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026338 B = 0.001662 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.833347 B =16848.017326 C =17234.713337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.611 5.611 3 C 0.086 3.914 4 C 0.097 3.903 5 H 0.093 0.907 6 O -0.536 6.536 7 C 0.029 3.971 8 N -0.657 5.657 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.526 3.474 22 O -0.506 6.506 23 C 0.079 3.921 24 H 0.078 0.922 25 C -0.152 4.152 26 C -0.120 4.120 27 C -0.160 4.160 28 C 0.060 3.940 29 O -0.355 6.355 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.377 0.623 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.349 0.651 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 -22.172 -18.044 32.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.346 5.346 3 C -0.038 4.038 4 C 0.036 3.964 5 H 0.111 0.889 6 O -0.340 6.340 7 C -0.102 4.102 8 N -0.290 5.290 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.464 6.464 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.312 3.688 22 O -0.379 6.379 23 C 0.017 3.983 24 H 0.095 0.905 25 C -0.190 4.190 26 C -0.158 4.158 27 C -0.197 4.197 28 C -0.017 4.017 29 O -0.273 6.273 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.224 0.776 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.069 0.931 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.789 -22.865 -16.946 32.073 hybrid contribution -0.390 1.473 -0.262 1.546 sum -15.179 -21.392 -17.209 31.371 Atomic orbital electron populations 1.22119 0.79606 1.04129 1.02118 1.47547 1.06752 1.05501 1.74800 1.22242 0.98513 0.84804 0.98212 1.22218 0.94395 0.87864 0.91954 0.88877 1.86593 1.29206 1.61732 1.56509 1.22629 1.00363 0.95805 0.91418 1.59912 1.32571 1.26696 1.09793 1.21688 0.99954 0.89592 0.96946 1.19812 0.84401 0.83391 0.89741 1.90535 1.55763 1.52503 1.47630 1.41861 1.53625 1.15914 1.08791 1.19714 1.37149 1.01900 0.84056 0.87931 1.25257 0.97101 0.95883 0.99752 1.69612 1.42143 1.10726 1.31951 0.85850 0.78924 0.77410 0.82055 1.20390 1.20972 1.19449 1.20038 0.87914 0.84334 0.76510 1.90694 1.13906 1.86605 1.46650 1.21857 0.91517 0.87288 0.97624 0.90460 1.22303 1.00876 0.98468 0.97336 1.21590 0.97676 0.94091 1.02439 1.22228 0.99395 0.99079 0.99040 1.22664 0.98037 0.84938 0.96046 1.88066 1.32758 1.15770 1.90656 0.92364 0.90075 0.90678 0.89576 0.89317 0.77561 0.94896 0.90664 0.83149 0.89659 0.94073 0.77493 0.91923 0.89779 0.89656 0.91630 0.90771 0.90614 0.90609 0.93114 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 9.98 59.85 0.60 0.91 16 2 N -0.61 -5.34 2.86 -181.57 -0.52 -5.86 16 3 C 0.09 0.75 5.12 -4.04 -0.02 0.73 16 4 C 0.10 1.09 3.42 -26.73 -0.09 1.00 16 5 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 6 O -0.54 -7.93 11.94 -48.03 -0.57 -8.51 16 7 C 0.03 0.34 5.35 -3.83 -0.02 0.32 16 8 N -0.66 -11.04 5.99 -115.06 -0.69 -11.73 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.75 7.82 -10.98 -0.09 10.67 16 11 O -0.58 -16.37 15.78 5.55 0.09 -16.29 16 12 N -0.56 -14.66 5.29 -10.96 -0.06 -14.72 16 13 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 17 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.53 6.04 6.68 -10.98 -0.07 5.97 16 22 O -0.51 -7.88 14.86 -21.29 -0.32 -8.19 16 23 C 0.08 0.70 2.23 -27.83 -0.06 0.63 16 24 H 0.08 0.50 7.64 -51.93 -0.40 0.10 16 25 C -0.15 -1.12 5.10 -26.59 -0.14 -1.25 16 26 C -0.12 -0.64 6.03 -26.54 -0.16 -0.80 16 27 C -0.16 -0.92 6.14 -26.59 -0.16 -1.08 16 28 C 0.06 0.41 6.84 37.21 0.25 0.66 16 29 O -0.35 -3.86 9.98 -54.70 -0.55 -4.41 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.33 4.03 -51.93 -0.21 0.12 16 32 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 33 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.09 0.88 7.49 -51.93 -0.39 0.49 16 35 H 0.38 5.26 8.63 45.56 0.39 5.65 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.35 6.10 8.43 -39.29 -0.33 5.77 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.49 5.51 -51.93 -0.29 0.21 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -36.88 403.80 -8.45 -45.33 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.39 Total: 15.58 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.23 Total: 10.48 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.54 Total: -56.48 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.35 Total: -37.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.88 -8.45 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755776163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.789 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds