Wall clock time and date at job start Wed Apr 1 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47324 * 270.00292 * 3 2 1 5 5 H 1.48507 * 109.47227 * 30.00346 * 3 2 1 6 6 H 1.48498 * 109.47479 * 149.99903 * 3 2 1 7 7 C 1.38811 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00488 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00256 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47426 * 154.99718 * 10 9 7 12 12 C 1.53003 * 109.47241 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47087 * 300.00042 * 12 11 10 14 14 N 1.46498 * 109.46963 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99828 * 154.72290 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.09003 * 109.24766 * 300.00555 * 17 15 14 19 19 C 1.52715 * 109.25681 * 180.52624 * 17 15 14 20 20 C 1.53315 * 108.44738 * 188.38758 * 19 17 15 21 21 C 1.52765 * 108.32700 * 69.89071 * 20 19 17 22 22 C 1.50494 * 110.55927 * 309.13384 * 21 20 19 23 23 C 1.39184 * 117.97422 * 197.27302 * 22 21 20 24 24 C 1.38411 * 118.86583 * 180.55543 * 23 22 21 25 25 C 1.38238 * 118.84276 * 359.97438 * 24 23 22 26 26 N 1.31514 * 120.60875 * 359.85201 * 25 24 23 27 27 C 1.32692 * 122.40290 * 0.04977 * 26 25 24 28 28 C 1.52997 * 109.47114 * 59.99880 * 13 12 11 29 29 C 1.52999 * 109.46797 * 274.99695 * 10 9 7 30 30 H 0.96995 * 120.00140 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99694 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47033 * 34.99618 * 10 9 7 33 33 H 1.09004 * 109.46812 * 59.99970 * 11 10 9 34 34 H 1.08997 * 109.47293 * 299.99867 * 11 10 9 35 35 H 1.08997 * 109.46962 * 180.02562 * 12 11 10 36 36 H 1.08995 * 109.46928 * 60.00077 * 12 11 10 37 37 H 1.09004 * 109.47434 * 300.00074 * 13 12 11 38 38 H 0.97001 * 120.00384 * 335.00737 * 14 13 12 39 39 H 1.08999 * 109.64618 * 308.11139 * 19 17 15 40 40 H 1.09003 * 109.63726 * 68.74250 * 19 17 15 41 41 H 1.08999 * 109.71168 * 310.18045 * 20 19 17 42 42 H 1.09003 * 109.69030 * 189.59340 * 20 19 17 43 43 H 1.09002 * 109.26168 * 188.85138 * 21 20 19 44 44 H 1.09003 * 109.25714 * 69.41020 * 21 20 19 45 45 H 1.08002 * 120.56565 * 0.58408 * 23 22 21 46 46 H 1.08000 * 120.57428 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.69131 * 179.87345 * 25 24 23 48 48 H 1.09009 * 109.47238 * 59.99946 * 28 13 12 49 49 H 1.08997 * 109.47293 * 179.97438 * 28 13 12 50 50 H 1.08995 * 109.47266 * 299.99780 * 29 10 9 51 51 H 1.09000 * 109.47204 * 59.99838 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.4995 -2.2588 -0.6091 12 6 6.2648 -3.5837 -0.6085 13 6 6.4104 -4.0879 0.8287 14 7 7.1426 -5.3568 0.8292 15 6 7.8294 -5.7380 1.9243 16 8 7.8372 -5.0330 2.9112 17 6 8.5878 -7.0403 1.9228 18 1 7.8924 -7.8608 1.7459 19 6 9.2600 -7.2333 3.2804 20 6 10.1919 -8.4475 3.1920 21 6 11.3747 -8.0811 2.2974 22 6 10.8927 -7.5003 0.9955 23 6 11.7880 -7.4518 -0.0691 24 6 11.3676 -6.9105 -1.2716 25 6 10.0727 -6.4374 -1.3736 26 7 9.2531 -6.5028 -0.3471 27 6 9.6166 -7.0158 0.8214 28 6 5.0230 -4.3000 1.4378 29 6 4.2577 -2.9756 1.4370 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 0.0004 32 1 3.5650 -3.2063 -0.5897 33 1 6.0466 -1.5233 -0.0193 34 1 5.3958 -1.8992 -1.6328 35 1 7.2533 -3.4324 -1.0420 36 1 5.7178 -4.3194 -1.1980 37 1 6.9574 -3.3521 1.4183 38 1 7.1364 -5.9206 0.0399 39 1 9.8384 -6.3445 3.5326 40 1 8.5014 -7.4091 4.0431 41 1 9.6545 -9.2929 2.7623 42 1 10.5513 -8.7078 4.1877 43 1 11.9638 -8.9758 2.0958 44 1 11.9989 -7.3483 2.8088 45 1 12.7934 -7.8304 0.0412 46 1 12.0393 -6.8596 -2.1158 47 1 9.7309 -6.0105 -2.3049 48 1 4.4759 -5.0358 0.8482 49 1 5.1267 -4.6596 2.4615 50 1 4.8049 -2.2402 2.0267 51 1 3.2693 -3.1267 1.8709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026547366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:58 Heat of formation + Delta-G solvation = -11.846688 kcal Electronic energy + Delta-G solvation = -30204.995770 eV Core-core repulsion = 26296.091330 eV Total energy + Delta-G solvation = -3908.904439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.36348 -39.66750 -38.08979 -36.69303 -34.82441 -33.90530 -32.78285 -31.04901 -30.79042 -30.38975 -30.26521 -27.63416 -25.07325 -23.74845 -23.66796 -22.90209 -22.33604 -21.00213 -20.43989 -20.03881 -19.50903 -17.68104 -17.27140 -16.97480 -16.80905 -16.05710 -15.95362 -15.02769 -14.93378 -14.63498 -14.44358 -14.15004 -13.98566 -13.91462 -13.65085 -13.44829 -13.34347 -12.99296 -12.84040 -12.81450 -12.55204 -12.31311 -12.04914 -11.87614 -11.67146 -11.54470 -11.30857 -11.03867 -10.99204 -10.80987 -10.79056 -10.58835 -10.20289 -10.16190 -10.06609 -9.92716 -9.72062 -9.66052 -9.51445 -9.11378 -8.84767 -8.73517 -7.19633 -5.71458 -3.06120 0.66672 0.83444 2.65079 3.18686 3.42187 3.43262 3.45789 3.49689 3.76776 4.09338 4.30676 4.37178 4.49961 4.53901 4.64609 4.68491 4.80071 4.91373 4.97274 5.01335 5.04872 5.11422 5.17901 5.24883 5.32409 5.36217 5.45609 5.54316 5.55575 5.64536 5.67433 5.70922 5.71821 5.77680 5.86747 5.89357 5.90658 5.97423 6.03677 6.24119 6.26465 6.28410 6.34963 6.45730 6.55948 6.71411 6.76606 6.97982 7.13111 7.54773 7.70450 8.06020 8.36470 8.48148 9.27241 10.00132 10.20545 11.47120 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.002250 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.802617 B =12442.197933 C =13171.788805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.115 4.115 13 C 0.145 3.855 14 N -0.706 5.706 15 C 0.525 3.475 16 O -0.545 6.545 17 C -0.057 4.057 18 H 0.113 0.887 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.077 4.077 24 C -0.172 4.172 25 C 0.107 3.893 26 N -0.484 5.484 27 C 0.138 3.862 28 C -0.123 4.123 29 C -0.132 4.132 30 H 0.258 0.742 31 H 0.360 0.640 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.407 0.593 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.159 0.841 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.183 -21.229 0.046 35.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.194 4.194 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.073 3.927 11 C -0.163 4.163 12 C -0.154 4.154 13 C 0.041 3.959 14 N -0.357 5.357 15 C 0.309 3.691 16 O -0.422 6.422 17 C -0.079 4.079 18 H 0.131 0.869 19 C -0.139 4.139 20 C -0.159 4.159 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.103 4.103 24 C -0.192 4.192 25 C -0.052 4.052 26 N -0.192 5.192 27 C 0.003 3.997 28 C -0.162 4.162 29 C -0.173 4.173 30 H 0.068 0.932 31 H 0.193 0.807 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.152 0.848 46 H 0.154 0.846 47 H 0.176 0.824 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 27.067 -20.454 0.631 33.932 hybrid contribution 1.446 0.683 -0.459 1.664 sum 28.513 -19.771 0.172 34.697 Atomic orbital electron populations 1.69702 1.05088 1.25717 1.57911 1.24672 0.95239 0.97189 1.02276 0.86545 0.79266 0.85032 0.77690 1.21181 1.21856 1.20292 1.19088 0.80667 0.94643 1.42479 0.89240 1.42810 1.03980 1.02121 1.90288 1.20213 0.90237 0.89008 0.93255 1.21794 0.96865 0.96057 1.01552 1.21685 1.00338 0.98102 0.95226 1.21056 0.92547 0.85192 0.97155 1.46176 1.49943 1.23150 1.16401 1.20062 0.78935 0.86825 0.83233 1.90707 1.63215 1.54705 1.33591 1.20228 0.95561 0.97946 0.94165 0.86949 1.21418 0.99255 0.98956 0.94277 1.21610 0.96121 0.98075 1.00073 1.20472 0.98428 1.00656 0.92128 1.20418 0.94024 1.00522 0.97049 1.21606 0.99538 0.96771 0.92380 1.22143 0.97978 1.00417 0.98687 1.22681 0.90145 0.95516 0.96888 1.67340 1.37726 1.14505 0.99675 1.20565 0.92302 0.94657 0.92215 1.21883 0.94789 0.99015 1.00562 1.22164 0.99927 0.94903 1.00261 0.93160 0.80740 0.92708 0.92262 0.91406 0.91902 0.91457 0.89973 0.75541 0.90287 0.90008 0.91334 0.90499 0.90398 0.90101 0.84799 0.84641 0.82395 0.92187 0.92299 0.92714 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16 2 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 3 Si 0.88 22.61 27.73 -169.99 -4.71 17.89 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 7 C -0.24 -6.83 10.41 -15.06 -0.16 -6.98 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -18.07 4.92 -53.43 -0.26 -18.34 16 10 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 11 C -0.12 -1.96 5.39 -26.73 -0.14 -2.10 16 12 C -0.11 -1.49 5.39 -26.73 -0.14 -1.64 16 13 C 0.14 2.04 2.46 -67.93 -0.17 1.87 16 14 N -0.71 -8.70 4.47 -53.81 -0.24 -8.94 16 15 C 0.52 6.91 7.02 -10.98 -0.08 6.84 16 16 O -0.54 -9.18 15.49 5.55 0.09 -9.09 16 17 C -0.06 -0.55 2.70 -93.05 -0.25 -0.80 16 18 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.10 -0.85 4.65 -26.71 -0.12 -0.97 16 20 C -0.12 -0.68 5.99 -26.69 -0.16 -0.84 16 21 C -0.08 -0.44 5.68 -28.10 -0.16 -0.60 16 22 C -0.12 -0.90 5.74 -104.60 -0.60 -1.50 16 23 C -0.08 -0.48 9.75 -39.17 -0.38 -0.87 16 24 C -0.17 -1.06 10.12 -39.52 -0.40 -1.46 16 25 C 0.11 0.81 11.19 -17.69 -0.20 0.61 16 26 N -0.48 -4.62 7.58 -9.51 -0.07 -4.69 16 27 C 0.14 1.29 6.20 -82.44 -0.51 0.78 16 28 C -0.12 -1.90 5.49 -26.76 -0.15 -2.05 16 29 C -0.13 -2.43 5.50 -26.75 -0.15 -2.58 16 30 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 31 H 0.36 8.57 5.66 -40.82 -0.23 8.34 16 32 H 0.05 1.10 8.08 -51.93 -0.42 0.69 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.34 7.57 -51.93 -0.39 0.94 16 38 H 0.41 4.40 6.98 -40.82 -0.28 4.11 16 39 H 0.08 0.80 7.78 -51.93 -0.40 0.39 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 47 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -34.74 397.40 -11.00 -45.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.51 Total: 9.50 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.05 Total: -8.98 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.20 Total: -61.05 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.74 -11.00 -45.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026547366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.894 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds