Wall clock time and date at job start Wed Apr 1 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47279 * 299.99883 * 3 2 1 6 6 H 1.48506 * 109.46927 * 59.99902 * 3 2 1 7 7 C 1.38812 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00281 * 158.47260 * 7 2 1 9 9 N 1.36939 * 120.00132 * 338.47171 * 7 2 1 10 10 C 1.43332 * 120.66819 * 156.00971 * 9 7 2 11 11 C 1.54906 * 116.13966 * 271.80270 * 10 9 7 12 12 C 1.54843 * 110.03184 * 318.41026 * 11 10 9 13 13 C 1.50128 * 110.81369 * 321.20311 * 12 11 10 14 14 C 1.52529 * 105.41715 * 97.68095 * 13 12 11 15 15 H 1.09008 * 108.51681 * 31.83303 * 14 13 12 16 16 N 1.46498 * 108.52166 * 149.50348 * 14 13 12 17 17 C 1.34781 * 119.99423 * 205.00376 * 16 14 13 18 18 O 1.21281 * 120.00321 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99416 * 180.02562 * 17 16 14 20 20 H 1.09005 * 109.25399 * 299.47289 * 19 17 16 21 21 C 1.52726 * 109.25665 * 179.97438 * 19 17 16 22 22 C 1.53325 * 108.42975 * 188.44276 * 21 19 17 23 23 C 1.52771 * 108.35007 * 69.89445 * 22 21 19 24 24 C 1.50501 * 110.56001 * 309.19982 * 23 22 21 25 25 C 1.39189 * 117.97269 * 197.29099 * 24 23 22 26 26 C 1.38407 * 118.86453 * 180.20598 * 25 24 23 27 27 C 1.38242 * 118.84846 * 0.03044 * 26 25 24 28 28 N 1.31508 * 120.60780 * 359.86555 * 27 26 25 29 29 C 1.32708 * 122.39883 * 0.05125 * 28 27 26 30 30 C 1.46234 * 114.27817 * 270.59535 * 14 13 12 31 31 H 0.97000 * 119.99618 * 0.02562 * 1 2 3 32 32 H 1.08996 * 108.25614 * 149.97216 * 10 9 7 33 33 H 1.09001 * 108.00770 * 33.43637 * 10 9 7 34 34 H 1.08998 * 109.36022 * 198.27560 * 11 10 9 35 35 H 1.08996 * 109.35881 * 78.54687 * 11 10 9 36 36 H 1.09000 * 109.20675 * 81.54121 * 12 11 10 37 37 H 1.08999 * 109.21290 * 200.85968 * 12 11 10 38 38 H 1.09003 * 110.24955 * 216.65639 * 13 12 11 39 39 H 1.09000 * 110.25334 * 338.56824 * 13 12 11 40 40 H 0.96990 * 120.00220 * 25.00243 * 16 14 13 41 41 H 1.09006 * 109.67090 * 308.17968 * 21 19 17 42 42 H 1.09003 * 109.67113 * 68.67316 * 21 19 17 43 43 H 1.08998 * 109.69082 * 189.60793 * 22 21 19 44 44 H 1.09003 * 109.68624 * 310.14753 * 22 21 19 45 45 H 1.09000 * 109.25705 * 69.47428 * 23 22 21 46 46 H 1.08993 * 109.26461 * 188.95822 * 23 22 21 47 47 H 1.07994 * 120.56691 * 0.18379 * 25 24 23 48 48 H 1.08001 * 120.57388 * 180.02562 * 26 25 24 49 49 H 1.07998 * 119.69959 * 179.88959 * 27 26 25 50 50 H 1.08997 * 109.84322 * 177.91414 * 30 14 13 51 51 H 1.09006 * 109.84524 * 298.83015 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0337 -1.2350 -0.3426 9 7 1.3971 -2.3465 0.4362 10 6 1.8519 -3.6326 -0.0038 11 6 1.2236 -4.1667 -1.3151 12 6 -0.2959 -3.8692 -1.3348 13 6 -0.8948 -4.0612 0.0284 14 6 -0.9635 -2.6661 0.6412 15 1 -1.1254 -1.9440 -0.1591 16 7 -2.1098 -2.6139 1.5520 17 6 -2.6984 -1.4331 1.8273 18 8 -2.2789 -0.4138 1.3214 19 6 -3.8773 -1.3793 2.7646 20 1 -4.6879 -1.9839 2.3577 21 6 -4.3469 0.0676 2.9007 22 6 -5.4010 0.1325 4.0122 23 6 -4.7040 -0.1058 5.3506 24 6 -3.8558 -1.3476 5.2910 25 6 -3.4485 -1.9184 6.4934 26 6 -2.6642 -3.0583 6.4601 27 6 -2.3121 -3.5901 5.2336 28 7 -2.7172 -3.0247 4.1175 29 6 -3.4711 -1.9326 4.1065 30 6 0.2343 -2.2759 1.3838 31 1 -0.4849 0.8401 -0.0004 32 1 1.6516 -4.3548 0.7876 33 1 2.9318 -3.5790 -0.1419 34 1 1.3817 -5.2433 -1.3792 35 1 1.6981 -3.6804 -2.1674 36 1 -0.4555 -2.8395 -1.6548 37 1 -0.7842 -4.5427 -2.0391 38 1 -1.8950 -4.4862 -0.0554 39 1 -0.2594 -4.7096 0.6317 40 1 -2.4451 -3.4290 1.9568 41 1 -3.5013 0.7051 3.1592 42 1 -4.7841 0.4016 1.9597 43 1 -5.8730 1.1150 4.0139 44 1 -6.1554 -0.6371 3.8483 45 1 -4.0716 0.7507 5.5841 46 1 -5.4553 -0.2215 6.1318 47 1 -3.7391 -1.4790 7.4362 48 1 -2.3330 -3.5242 7.3764 49 1 -1.6991 -4.4782 5.1915 50 1 0.1228 -1.2580 1.7574 51 1 0.3926 -2.9605 2.2171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034368043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:27 Heat of formation + Delta-G solvation = 28.026327 kcal Electronic energy + Delta-G solvation = -32220.188537 eV Core-core repulsion = 28313.013121 eV Total energy + Delta-G solvation = -3907.175416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.86558 -38.97014 -37.48454 -36.15537 -33.79540 -33.33139 -32.92768 -30.67035 -30.47410 -30.09589 -29.06311 -25.96937 -24.66892 -24.03736 -23.29084 -23.23402 -22.27615 -20.26341 -19.66646 -19.35876 -18.61199 -16.91972 -16.51264 -16.42326 -16.24465 -15.49763 -15.18262 -14.71238 -14.37597 -14.27675 -14.02377 -13.74016 -13.64740 -13.51264 -13.15093 -12.99907 -12.89532 -12.60174 -12.38729 -12.09037 -11.99779 -11.79721 -11.69552 -11.17117 -11.14111 -11.08786 -10.86385 -10.62297 -10.57466 -10.51994 -10.07673 -9.99978 -9.72875 -9.65686 -9.62631 -9.43179 -9.38031 -9.19229 -8.96982 -8.47447 -8.26182 -7.81539 -6.47742 -5.48671 -2.92236 1.08342 1.23904 3.52313 3.52405 3.60867 3.62392 3.78564 4.14861 4.26391 4.56359 4.68805 4.71871 4.80587 4.89511 4.96731 5.10941 5.18053 5.43220 5.46257 5.53726 5.57951 5.60727 5.69190 5.72070 5.73572 5.76488 5.84541 5.84796 5.98097 6.03109 6.10615 6.18940 6.26751 6.28848 6.37027 6.46268 6.47059 6.56564 6.64770 6.67901 6.80087 6.99349 7.08303 7.11443 7.30447 7.32186 7.59961 7.81400 7.89155 8.00537 8.08119 8.66600 8.67828 9.32249 9.48589 10.09093 10.62785 11.55494 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004274 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.734716 B = 6549.195368 C = 7522.373431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.012 3.988 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.278 4.278 8 H 0.064 0.936 9 N -0.581 5.581 10 C 0.159 3.841 11 C -0.144 4.144 12 C -0.104 4.104 13 C -0.120 4.120 14 C 0.131 3.869 15 H 0.124 0.876 16 N -0.716 5.716 17 C 0.504 3.496 18 O -0.491 6.491 19 C -0.061 4.061 20 H 0.103 0.897 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.077 4.077 24 C -0.123 4.123 25 C -0.079 4.079 26 C -0.178 4.178 27 C 0.107 3.893 28 N -0.476 5.476 29 C 0.147 3.853 30 C 0.163 3.837 31 H 0.260 0.740 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.391 0.609 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.155 0.845 50 H 0.091 0.909 51 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 -6.980 11.858 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.407 4.407 8 H 0.081 0.919 9 N -0.302 5.302 10 C 0.030 3.970 11 C -0.185 4.185 12 C -0.142 4.142 13 C -0.158 4.158 14 C 0.027 3.973 15 H 0.142 0.858 16 N -0.370 5.370 17 C 0.286 3.714 18 O -0.364 6.364 19 C -0.083 4.083 20 H 0.121 0.879 21 C -0.137 4.137 22 C -0.158 4.158 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.198 4.198 27 C -0.053 4.053 28 N -0.185 5.185 29 C 0.012 3.988 30 C 0.039 3.961 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.226 0.774 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.149 0.851 48 H 0.150 0.850 49 H 0.173 0.827 50 H 0.109 0.891 51 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -11.989 -6.422 10.679 17.292 hybrid contribution 0.087 0.643 1.118 1.293 sum -11.902 -5.779 11.797 17.727 Atomic orbital electron populations 1.69858 1.03816 1.26024 1.49667 1.24985 0.95256 0.97788 1.01014 0.86519 0.79474 0.85489 0.76963 1.20733 1.22094 1.21971 1.19000 0.94384 0.85654 1.41647 0.91854 1.44037 1.36192 1.00895 1.49117 1.20371 0.96179 0.88005 0.92493 1.22909 0.95996 0.97953 1.01677 1.21287 0.95452 1.01996 0.95494 1.21313 0.99174 0.97610 0.97743 1.21052 0.85644 0.96152 0.94421 0.85844 1.46446 1.33502 1.08825 1.48181 1.19908 0.83994 0.85002 0.82509 1.90905 1.62501 1.32798 1.50175 1.20313 0.98699 0.98276 0.91007 0.87924 1.21381 0.99059 0.94098 0.99191 1.21605 0.97924 1.02128 0.94125 1.20440 0.97685 0.94699 0.98636 1.20416 1.00480 0.98432 0.93154 1.21540 0.96089 0.95080 0.97819 1.22076 1.00311 0.97701 0.99702 1.22653 0.96489 0.98630 0.87529 1.67406 1.09848 1.09730 1.31519 1.20695 0.93153 0.91207 0.93766 1.20361 0.85421 1.00881 0.89475 0.92849 0.95743 0.95299 0.94094 0.93131 0.90703 0.94679 0.93059 0.92242 0.77365 0.90255 0.90266 0.90905 0.91671 0.90262 0.90786 0.85138 0.84989 0.82732 0.89067 0.98066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.83 7.74 55.49 0.43 -24.40 16 2 C 0.01 0.33 4.85 -17.43 -0.08 0.25 16 3 Si 0.89 22.75 29.61 -169.99 -5.03 17.72 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 7 C -0.28 -7.84 9.61 -15.06 -0.14 -7.98 16 8 H 0.06 1.80 7.91 -52.49 -0.41 1.39 16 9 N -0.58 -14.85 2.60 -175.16 -0.45 -15.31 16 10 C 0.16 3.47 5.16 -4.71 -0.02 3.45 16 11 C -0.14 -2.82 6.42 -24.75 -0.16 -2.98 16 12 C -0.10 -2.06 5.65 -27.19 -0.15 -2.21 16 13 C -0.12 -2.26 5.22 -28.40 -0.15 -2.41 16 14 C 0.13 2.87 1.81 -71.39 -0.13 2.74 16 15 H 0.12 3.27 4.67 -51.92 -0.24 3.03 16 16 N -0.72 -13.67 4.34 -57.21 -0.25 -13.92 16 17 C 0.50 9.94 6.86 -10.98 -0.08 9.87 16 18 O -0.49 -11.88 12.90 5.56 0.07 -11.81 16 19 C -0.06 -0.90 2.71 -93.05 -0.25 -1.16 16 20 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 21 C -0.10 -1.34 4.65 -26.70 -0.12 -1.47 16 22 C -0.12 -1.18 5.98 -26.68 -0.16 -1.34 16 23 C -0.08 -0.75 5.68 -28.10 -0.16 -0.91 16 24 C -0.12 -1.48 5.74 -104.60 -0.60 -2.08 16 25 C -0.08 -0.82 9.75 -39.17 -0.38 -1.20 16 26 C -0.18 -1.82 10.12 -39.52 -0.40 -2.22 16 27 C 0.11 1.28 11.19 -17.69 -0.20 1.09 16 28 N -0.48 -6.94 7.54 -9.51 -0.07 -7.01 16 29 C 0.15 2.11 6.19 -82.43 -0.51 1.59 16 30 C 0.16 4.03 4.60 -5.21 -0.02 4.00 16 31 H 0.26 7.75 8.06 -40.82 -0.33 7.42 16 32 H 0.02 0.50 6.88 -51.93 -0.36 0.14 16 33 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.76 6.83 -51.93 -0.35 1.40 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 39 H 0.06 1.09 6.29 -51.93 -0.33 0.76 16 40 H 0.39 6.60 6.87 -40.82 -0.28 6.32 16 41 H 0.08 1.27 7.78 -51.93 -0.40 0.86 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 47 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 50 H 0.09 2.63 5.59 -51.93 -0.29 2.34 16 51 H 0.00 0.03 8.12 -51.93 -0.42 -0.39 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -32.17 380.62 -11.42 -43.59 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.12 Total: 8.37 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.73 Total: -2.97 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.35 Total: -60.64 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.17 -11.42 -43.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034368043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.617 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds