Wall clock time and date at job start Wed Apr 1 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47088 * 5.28789 * 3 2 1 5 5 H 1.48495 * 109.46844 * 125.28667 * 3 2 1 6 6 H 1.48497 * 109.46908 * 245.28684 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 345.64942 * 7 2 1 9 9 N 1.36935 * 119.99964 * 165.65470 * 7 2 1 10 10 C 1.47083 * 125.62931 * 348.94815 * 9 7 2 11 11 C 1.54457 * 107.29725 * 180.96847 * 10 9 7 12 12 C 1.54385 * 102.87109 * 21.50085 * 11 10 9 13 13 C 1.47575 * 125.62495 * 168.63854 * 9 7 2 14 14 C 1.52103 * 110.51270 * 207.36010 * 12 11 10 15 15 C 1.53353 * 109.44168 * 295.90713 * 14 12 11 16 16 N 1.46928 * 108.68597 * 306.70339 * 15 14 12 17 17 C 1.34780 * 120.55004 * 234.32223 * 16 15 14 18 18 O 1.21274 * 120.00308 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99709 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46742 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.46742 * 180.02562 * 20 19 17 22 22 C 1.38675 * 120.41673 * 269.71789 * 21 20 19 23 23 C 1.38630 * 118.42097 * 179.78536 * 22 21 20 24 24 C 1.38228 * 119.15642 * 0.51783 * 23 22 21 25 25 N 1.31855 * 120.76616 * 359.72460 * 24 23 22 26 26 C 1.31883 * 121.72624 * 359.97438 * 25 24 23 27 27 C 1.46928 * 118.89841 * 54.34776 * 16 15 14 28 28 C 1.52110 * 110.50739 * 83.33374 * 12 11 10 29 29 H 0.97002 * 120.00420 * 174.93157 * 1 2 3 30 30 H 1.09003 * 109.87408 * 300.38969 * 10 9 7 31 31 H 1.09002 * 109.87658 * 61.53556 * 10 9 7 32 32 H 1.08995 * 110.73251 * 139.85226 * 11 10 9 33 33 H 1.09004 * 110.72660 * 263.15810 * 11 10 9 34 34 H 1.09003 * 110.37719 * 275.51894 * 13 9 7 35 35 H 1.08995 * 110.38134 * 37.87499 * 13 9 7 36 36 H 1.08994 * 109.47603 * 55.89370 * 14 12 11 37 37 H 1.09001 * 109.48068 * 175.91999 * 14 12 11 38 38 H 1.08992 * 109.59858 * 186.93829 * 15 14 12 39 39 H 1.08995 * 109.59725 * 66.46106 * 15 14 12 40 40 H 1.08997 * 109.47266 * 299.99573 * 19 17 16 41 41 H 1.08993 * 109.47410 * 59.99931 * 19 17 16 42 42 H 1.08991 * 109.47361 * 299.99693 * 20 19 17 43 43 H 1.09004 * 109.47042 * 60.00382 * 20 19 17 44 44 H 1.08002 * 120.78977 * 0.02700 * 22 21 20 45 45 H 1.07997 * 120.42347 * 180.22039 * 23 22 21 46 46 H 1.08002 * 119.61687 * 179.75030 * 24 23 22 47 47 H 1.07998 * 119.62250 * 179.97438 * 26 25 24 48 48 H 1.08999 * 109.60337 * 185.89135 * 27 16 15 49 49 H 1.09002 * 109.73805 * 65.48129 * 27 16 15 50 50 H 1.08999 * 109.47619 * 184.07927 * 28 12 11 51 51 H 1.08999 * 109.47536 * 304.09031 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2903 2.7435 0.1290 5 1 3.1981 1.6420 1.1428 6 1 3.0046 1.7537 -1.2718 7 6 2.0102 -1.2021 -0.0005 8 1 1.4955 -2.1230 0.2309 9 7 3.3476 -1.2205 -0.2944 10 6 4.1193 -0.0961 -0.8451 11 6 5.5723 -0.5850 -1.0337 12 6 5.4140 -2.1196 -1.0913 13 6 4.2536 -2.3698 -0.1047 14 6 6.6835 -2.8048 -0.6091 15 6 7.8369 -2.4726 -1.5636 16 7 7.4250 -2.8065 -2.9338 17 6 8.1765 -3.6271 -3.6943 18 8 7.8274 -3.8957 -4.8243 19 6 9.4506 -4.2110 -3.1405 20 6 10.1061 -5.1007 -4.1988 21 6 11.3799 -5.6851 -3.6447 22 6 12.5856 -5.0189 -3.8044 23 6 13.7313 -5.5918 -3.2742 24 6 13.6360 -6.8048 -2.6183 25 7 12.4729 -7.4125 -2.4897 26 6 11.3620 -6.8942 -2.9760 27 6 6.1806 -2.2304 -3.4615 28 6 5.0368 -2.5641 -2.4962 29 1 -0.4851 -0.8367 -0.0742 30 1 3.7018 0.2046 -1.8060 31 1 4.0979 0.7436 -0.1504 32 1 5.9893 -0.2047 -1.9662 33 1 6.1910 -0.2924 -0.1853 34 1 4.6231 -2.3967 0.9205 35 1 3.7422 -3.3008 -0.3493 36 1 6.9282 -2.4528 0.3930 37 1 6.5287 -3.8836 -0.5879 38 1 8.7155 -3.0580 -1.2929 39 1 8.0691 -1.4096 -1.5003 40 1 10.1325 -3.4047 -2.8703 41 1 9.2233 -4.8063 -2.2562 42 1 9.4242 -5.9070 -4.4686 43 1 10.3335 -4.5057 -5.0834 44 1 12.6304 -4.0742 -4.3259 45 1 14.6868 -5.0991 -3.3766 46 1 14.5245 -7.2598 -2.2059 47 1 10.4278 -7.4214 -2.8515 48 1 5.9675 -2.6561 -4.4420 49 1 6.2830 -1.1486 -3.5469 50 1 4.8588 -3.6394 -2.5017 51 1 4.1320 -2.0443 -2.8112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035206021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:37 Heat of formation + Delta-G solvation = 26.269506 kcal Electronic energy + Delta-G solvation = -30044.190738 eV Core-core repulsion = 26136.939141 eV Total energy + Delta-G solvation = -3907.251597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.81612 -40.42019 -38.93707 -36.13267 -34.95318 -33.23710 -32.49375 -31.54253 -31.33111 -30.11157 -29.08293 -27.31802 -25.51550 -23.97289 -23.80240 -23.20565 -22.93437 -21.84674 -20.52694 -19.73022 -18.27491 -17.66237 -17.35472 -17.01953 -16.83659 -16.05075 -15.75689 -15.43159 -15.39710 -15.12657 -14.42491 -14.27446 -13.96799 -13.85266 -13.66835 -13.48782 -13.42319 -13.30270 -13.22190 -12.82370 -12.70294 -12.38403 -12.27741 -12.02560 -11.78466 -11.49686 -11.43057 -11.31071 -11.17751 -10.97348 -10.48962 -10.38470 -10.26093 -10.22330 -10.01117 -9.86856 -9.79780 -9.34974 -9.31506 -8.95704 -8.72742 -8.65559 -7.01855 -6.30317 -3.21591 0.67471 0.85822 2.47017 2.84325 3.39798 3.40822 3.48457 3.70952 3.99893 4.19470 4.38243 4.51960 4.55002 4.56701 4.61170 4.62866 4.70658 4.75176 4.80681 4.89902 4.99213 5.06534 5.13318 5.15198 5.23229 5.31440 5.33861 5.37204 5.47144 5.50949 5.61022 5.66282 5.67622 5.74337 5.74661 5.79237 5.89339 5.90738 5.94457 6.02195 6.22266 6.28705 6.29724 6.32010 6.39110 6.51183 6.63183 6.75112 6.76665 7.27552 7.56942 7.68272 8.02105 8.34216 9.05033 9.56797 10.24204 11.20325 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.002058 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.784689 B =13601.199363 C =13714.932224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.023 4.023 3 Si 1.073 2.927 4 H -0.303 1.303 5 H -0.300 1.300 6 H -0.287 1.287 7 C -0.319 4.319 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.123 4.123 12 C -0.071 4.071 13 C 0.147 3.853 14 C -0.118 4.118 15 C 0.107 3.893 16 N -0.607 5.607 17 C 0.514 3.486 18 O -0.546 6.546 19 C -0.134 4.134 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.073 4.073 23 C -0.171 4.171 24 C 0.091 3.909 25 N -0.484 5.484 26 C 0.102 3.898 27 C 0.110 3.890 28 C -0.111 4.111 29 H 0.261 0.739 30 H 0.044 0.956 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.536 -8.934 -6.268 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.223 4.223 3 Si 0.907 3.093 4 H -0.231 1.231 5 H -0.229 1.229 6 H -0.215 1.215 7 C -0.446 4.446 8 H 0.095 0.905 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.161 4.161 12 C -0.073 4.073 13 C 0.021 3.979 14 C -0.156 4.156 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.302 3.698 18 O -0.423 6.423 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.134 4.134 22 C -0.099 4.099 23 C -0.191 4.191 24 C -0.066 4.066 25 N -0.192 5.192 26 C -0.055 4.055 27 C -0.012 4.012 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.172 0.828 47 H 0.173 0.827 48 H 0.109 0.891 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 27.998 -8.248 -6.340 29.868 hybrid contribution 0.260 -0.749 -0.193 0.816 sum 28.258 -8.997 -6.532 30.367 Atomic orbital electron populations 1.70889 1.05721 1.29219 1.51313 1.25854 0.96510 1.00902 0.98988 0.83796 0.73035 0.76249 0.76175 1.23144 1.22861 1.21454 1.20161 0.81761 0.95955 1.46767 0.90544 1.44854 1.05654 1.08669 1.74731 1.21983 0.90478 0.91767 0.97040 1.22657 0.97456 0.94811 1.01135 1.21104 0.95070 0.95181 0.95902 1.21542 0.89521 0.91989 0.94862 1.21739 0.94180 1.01080 0.98639 1.21834 0.97564 1.01223 0.80942 1.48159 1.23978 1.47367 1.14529 1.20589 0.85304 0.78347 0.85573 1.90695 1.72383 1.60295 1.18974 1.21680 0.95042 1.00506 1.00175 1.20284 0.92655 0.99558 0.97477 1.20955 0.96098 0.96548 0.99787 1.21559 0.91927 0.99479 0.96941 1.22170 0.99568 0.97479 0.99838 1.22791 0.95792 0.92365 0.95640 1.67711 0.98945 1.34448 1.18073 1.22752 0.96800 0.92632 0.93303 1.21740 0.82862 0.98154 0.98397 1.21635 0.98068 1.01587 0.93636 0.92906 0.93840 0.95675 0.91339 0.91554 0.95919 0.93925 0.90379 0.91459 0.89952 0.90948 0.88869 0.88643 0.89646 0.89856 0.84784 0.84764 0.82844 0.82730 0.89132 0.91259 0.91861 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.70 55.49 0.76 -28.57 16 2 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 3 Si 1.07 26.89 24.53 -169.99 -4.17 22.72 16 4 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 5 H -0.30 -7.26 6.84 56.52 0.39 -6.87 16 6 H -0.29 -6.54 5.43 56.52 0.31 -6.24 16 7 C -0.32 -9.08 10.56 -15.06 -0.16 -9.23 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 N -0.61 -14.55 3.31 -170.17 -0.56 -15.12 16 10 C 0.11 2.35 4.24 -2.96 -0.01 2.34 16 11 C -0.12 -1.87 4.91 -25.24 -0.12 -2.00 16 12 C -0.07 -1.04 0.55 -153.98 -0.08 -1.12 16 13 C 0.15 2.79 6.16 -2.74 -0.02 2.78 16 14 C -0.12 -1.27 4.84 -27.01 -0.13 -1.40 16 15 C 0.11 0.94 6.07 -3.63 -0.02 0.92 16 16 N -0.61 -6.61 2.96 -172.58 -0.51 -7.13 16 17 C 0.51 5.72 7.70 -10.98 -0.08 5.63 16 18 O -0.55 -8.05 15.39 5.56 0.09 -7.97 16 19 C -0.13 -0.98 4.02 -27.88 -0.11 -1.09 16 20 C -0.06 -0.46 4.66 -27.88 -0.13 -0.59 16 21 C -0.13 -0.95 5.15 -104.48 -0.54 -1.48 16 22 C -0.07 -0.46 9.86 -39.28 -0.39 -0.84 16 23 C -0.17 -0.99 10.11 -39.44 -0.40 -1.39 16 24 C 0.09 0.64 11.18 -17.55 -0.20 0.45 16 25 N -0.48 -4.47 10.36 -13.25 -0.14 -4.61 16 26 C 0.10 0.83 10.86 -17.55 -0.19 0.64 16 27 C 0.11 1.39 6.12 -3.63 -0.02 1.37 16 28 C -0.11 -1.61 4.87 -27.01 -0.13 -1.74 16 29 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 30 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 31 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 32 H 0.07 0.92 6.18 -51.93 -0.32 0.60 16 33 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 34 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 35 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 36 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.52 5.91 -51.93 -0.31 0.21 16 39 H 0.07 0.60 7.62 -51.93 -0.40 0.21 16 40 H 0.09 0.54 7.93 -51.93 -0.41 0.13 16 41 H 0.10 0.60 7.70 -51.93 -0.40 0.20 16 42 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 43 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 47 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 48 H 0.09 1.24 6.99 -51.93 -0.36 0.88 16 49 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.09 1.47 7.82 -51.93 -0.41 1.06 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -34.97 387.79 -9.75 -44.72 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.22 Total: -2.33 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.84 Total: -7.56 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.45 Total: -55.43 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -4.17 Total: 22.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.97 -9.75 -44.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035206021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.990 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds