Wall clock time and date at job start Wed Apr 1 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47088 * 5.28789 * 3 2 1 5 5 H 1.48495 * 109.46844 * 125.28667 * 3 2 1 6 6 H 1.48497 * 109.46908 * 245.28684 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 345.64942 * 7 2 1 9 9 N 1.36935 * 119.99964 * 165.65470 * 7 2 1 10 10 C 1.47083 * 125.62931 * 348.94815 * 9 7 2 11 11 C 1.54457 * 107.29725 * 180.96847 * 10 9 7 12 12 C 1.54385 * 102.87109 * 21.50085 * 11 10 9 13 13 C 1.47575 * 125.62495 * 168.63854 * 9 7 2 14 14 C 1.52103 * 110.51270 * 207.36010 * 12 11 10 15 15 C 1.53353 * 109.44168 * 295.90713 * 14 12 11 16 16 N 1.46928 * 108.68597 * 306.70339 * 15 14 12 17 17 C 1.34780 * 120.55004 * 234.32223 * 16 15 14 18 18 O 1.21274 * 120.00308 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99709 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46742 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.46742 * 180.02562 * 20 19 17 22 22 C 1.38675 * 120.41673 * 269.71789 * 21 20 19 23 23 C 1.38630 * 118.42097 * 179.78536 * 22 21 20 24 24 C 1.38228 * 119.15642 * 0.51783 * 23 22 21 25 25 N 1.31855 * 120.76616 * 359.72460 * 24 23 22 26 26 C 1.31883 * 121.72624 * 359.97438 * 25 24 23 27 27 C 1.46928 * 118.89841 * 54.34776 * 16 15 14 28 28 C 1.52110 * 110.50739 * 83.33374 * 12 11 10 29 29 H 0.97002 * 120.00420 * 174.93157 * 1 2 3 30 30 H 1.09003 * 109.87408 * 300.38969 * 10 9 7 31 31 H 1.09002 * 109.87658 * 61.53556 * 10 9 7 32 32 H 1.08995 * 110.73251 * 139.85226 * 11 10 9 33 33 H 1.09004 * 110.72660 * 263.15810 * 11 10 9 34 34 H 1.09003 * 110.37719 * 275.51894 * 13 9 7 35 35 H 1.08995 * 110.38134 * 37.87499 * 13 9 7 36 36 H 1.08994 * 109.47603 * 55.89370 * 14 12 11 37 37 H 1.09001 * 109.48068 * 175.91999 * 14 12 11 38 38 H 1.08992 * 109.59858 * 186.93829 * 15 14 12 39 39 H 1.08995 * 109.59725 * 66.46106 * 15 14 12 40 40 H 1.08997 * 109.47266 * 299.99573 * 19 17 16 41 41 H 1.08993 * 109.47410 * 59.99931 * 19 17 16 42 42 H 1.08991 * 109.47361 * 299.99693 * 20 19 17 43 43 H 1.09004 * 109.47042 * 60.00382 * 20 19 17 44 44 H 1.08002 * 120.78977 * 0.02700 * 22 21 20 45 45 H 1.07997 * 120.42347 * 180.22039 * 23 22 21 46 46 H 1.08002 * 119.61687 * 179.75030 * 24 23 22 47 47 H 1.07998 * 119.62250 * 179.97438 * 26 25 24 48 48 H 1.08999 * 109.60337 * 185.89135 * 27 16 15 49 49 H 1.09002 * 109.73805 * 65.48129 * 27 16 15 50 50 H 1.08999 * 109.47619 * 184.07927 * 28 12 11 51 51 H 1.08999 * 109.47536 * 304.09031 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2903 2.7435 0.1290 5 1 3.1981 1.6420 1.1428 6 1 3.0046 1.7537 -1.2718 7 6 2.0102 -1.2021 -0.0005 8 1 1.4955 -2.1230 0.2309 9 7 3.3476 -1.2205 -0.2944 10 6 4.1193 -0.0961 -0.8451 11 6 5.5723 -0.5850 -1.0337 12 6 5.4140 -2.1196 -1.0913 13 6 4.2536 -2.3698 -0.1047 14 6 6.6835 -2.8048 -0.6091 15 6 7.8369 -2.4726 -1.5636 16 7 7.4250 -2.8065 -2.9338 17 6 8.1765 -3.6271 -3.6943 18 8 7.8274 -3.8957 -4.8243 19 6 9.4506 -4.2110 -3.1405 20 6 10.1061 -5.1007 -4.1988 21 6 11.3799 -5.6851 -3.6447 22 6 12.5856 -5.0189 -3.8044 23 6 13.7313 -5.5918 -3.2742 24 6 13.6360 -6.8048 -2.6183 25 7 12.4729 -7.4125 -2.4897 26 6 11.3620 -6.8942 -2.9760 27 6 6.1806 -2.2304 -3.4615 28 6 5.0368 -2.5641 -2.4962 29 1 -0.4851 -0.8367 -0.0742 30 1 3.7018 0.2046 -1.8060 31 1 4.0979 0.7436 -0.1504 32 1 5.9893 -0.2047 -1.9662 33 1 6.1910 -0.2924 -0.1853 34 1 4.6231 -2.3967 0.9205 35 1 3.7422 -3.3008 -0.3493 36 1 6.9282 -2.4528 0.3930 37 1 6.5287 -3.8836 -0.5879 38 1 8.7155 -3.0580 -1.2929 39 1 8.0691 -1.4096 -1.5003 40 1 10.1325 -3.4047 -2.8703 41 1 9.2233 -4.8063 -2.2562 42 1 9.4242 -5.9070 -4.4686 43 1 10.3335 -4.5057 -5.0834 44 1 12.6304 -4.0742 -4.3259 45 1 14.6868 -5.0991 -3.3766 46 1 14.5245 -7.2598 -2.2059 47 1 10.4278 -7.4214 -2.8515 48 1 5.9675 -2.6561 -4.4420 49 1 6.2830 -1.1486 -3.5469 50 1 4.8588 -3.6394 -2.5017 51 1 4.1320 -2.0443 -2.8112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035206021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:36 Heat of formation + Delta-G solvation = 3.542480 kcal Electronic energy + Delta-G solvation = -30045.176256 eV Core-core repulsion = 26136.939141 eV Total energy + Delta-G solvation = -3908.237115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.69620 -41.05073 -40.06943 -37.39996 -35.54976 -34.94047 -33.14179 -32.91428 -32.36923 -30.83616 -30.59184 -28.64888 -26.29107 -25.36118 -24.44901 -24.14906 -24.11282 -22.52807 -22.20149 -20.70616 -19.80287 -18.85800 -18.21790 -17.82124 -17.41537 -17.03693 -16.89981 -16.78719 -16.42801 -15.85240 -15.55613 -15.20994 -15.03452 -14.95031 -14.82743 -14.70180 -14.44837 -14.08046 -13.98470 -13.88812 -13.84834 -13.52307 -13.28036 -13.05361 -12.92866 -12.88287 -12.57674 -12.46584 -12.18423 -11.97806 -11.89973 -11.67387 -11.57248 -11.43804 -11.30692 -10.96853 -10.81056 -10.65425 -10.61840 -10.33510 -9.85412 -9.60038 -9.06013 -8.65751 -5.47038 0.19780 0.39290 1.39220 1.49230 1.65474 1.71912 2.03696 2.55120 2.90243 3.11900 3.32560 3.42850 3.54546 3.65157 3.73640 3.81697 3.92977 4.01574 4.02484 4.09165 4.14065 4.14603 4.26269 4.28893 4.31858 4.36507 4.46227 4.56147 4.62400 4.66783 4.70675 4.72277 4.75701 4.80060 4.89277 4.90715 4.92449 4.98190 5.05202 5.08306 5.10036 5.17810 5.24876 5.26157 5.40112 5.42312 5.42992 5.53700 5.62377 5.84073 6.10266 6.46845 6.83088 7.07981 7.19796 7.46129 8.10893 8.86990 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.002058 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.784689 B =13601.199363 C =13714.932224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.085 4.085 3 Si 1.115 2.885 4 H -0.316 1.316 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.307 4.307 8 H 0.040 0.960 9 N -0.632 5.632 10 C 0.100 3.900 11 C -0.109 4.109 12 C -0.058 4.058 13 C 0.139 3.861 14 C -0.113 4.113 15 C 0.108 3.892 16 N -0.607 5.607 17 C 0.510 3.490 18 O -0.589 6.589 19 C -0.124 4.124 20 C -0.055 4.055 21 C -0.132 4.132 22 C -0.076 4.076 23 C -0.166 4.166 24 C 0.077 3.923 25 N -0.516 5.516 26 C 0.085 3.915 27 C 0.119 3.881 28 C -0.105 4.105 29 H 0.245 0.755 30 H 0.028 0.972 31 H 0.022 0.978 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.172 0.828 47 H 0.158 0.842 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.052 0.948 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.757 -7.764 -5.989 35.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.277 4.277 3 Si 0.942 3.058 4 H -0.245 1.245 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.436 4.436 8 H 0.058 0.942 9 N -0.360 5.360 10 C -0.024 4.024 11 C -0.147 4.147 12 C -0.059 4.059 13 C 0.015 3.985 14 C -0.151 4.151 15 C -0.014 4.014 16 N -0.339 5.339 17 C 0.300 3.700 18 O -0.470 6.470 19 C -0.164 4.164 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.102 4.102 23 C -0.186 4.186 24 C -0.079 4.079 25 N -0.225 5.225 26 C -0.071 4.071 27 C -0.003 4.003 28 C -0.144 4.144 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.172 0.828 45 H 0.180 0.820 46 H 0.189 0.811 47 H 0.175 0.825 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.071 0.929 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 33.282 -7.115 -6.048 34.567 hybrid contribution -1.398 -1.282 -0.286 1.918 sum 31.884 -8.397 -6.335 33.574 Atomic orbital electron populations 1.70998 1.07089 1.28302 1.54795 1.27213 0.96533 1.04682 0.99299 0.83324 0.72332 0.71713 0.78385 1.24547 1.20977 1.17653 1.20041 0.84375 0.94445 1.44717 0.94215 1.44940 1.04800 1.11350 1.74901 1.22153 0.93702 0.90922 0.95650 1.22680 0.93805 0.94448 1.03733 1.21018 0.95087 0.95619 0.94174 1.21779 0.90333 0.89645 0.96775 1.21733 0.92566 1.00729 1.00115 1.22065 0.97562 1.03091 0.78651 1.48241 1.23057 1.47092 1.15551 1.21275 0.86123 0.77573 0.84979 1.90685 1.73591 1.61650 1.21092 1.21694 0.93264 1.01216 1.00197 1.20165 0.92601 0.99076 0.97479 1.20874 0.96337 0.96356 0.99829 1.21865 0.91572 1.00156 0.96616 1.22471 1.00657 0.96853 0.98579 1.23215 0.95789 0.93064 0.95846 1.67695 0.99892 1.35615 1.19293 1.22885 0.96905 0.93308 0.94009 1.21491 0.83125 0.98762 0.96964 1.21515 0.97751 1.00482 0.94628 0.94605 0.95436 0.96067 0.88673 0.88712 0.94908 0.95800 0.88440 0.91421 0.86450 0.89094 0.86129 0.87010 0.91122 0.90395 0.82773 0.82050 0.81069 0.82463 0.90824 0.90063 0.92893 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.80 13.70 21.65 0.30 -63.50 16 2 C -0.09 -5.19 5.50 84.86 0.47 -4.73 16 3 Si 1.11 54.39 24.53 68.60 1.68 56.08 16 4 H -0.32 -15.98 7.11 99.48 0.71 -15.28 16 5 H -0.28 -12.83 6.84 99.48 0.68 -12.15 16 6 H -0.25 -10.74 5.43 99.48 0.54 -10.20 16 7 C -0.31 -18.13 10.56 84.03 0.89 -17.25 16 8 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 9 N -0.63 -30.17 3.31 -692.29 -2.29 -32.47 16 10 C 0.10 3.98 4.24 86.76 0.37 4.35 16 11 C -0.11 -2.87 4.91 31.56 0.16 -2.72 16 12 C -0.06 -1.53 0.55 -51.84 -0.03 -1.56 16 13 C 0.14 5.22 6.16 86.63 0.53 5.75 16 14 C -0.11 -1.92 4.84 30.42 0.15 -1.77 16 15 C 0.11 1.27 6.07 86.42 0.52 1.80 16 16 N -0.61 -11.08 2.96 -818.31 -2.42 -13.50 16 17 C 0.51 9.97 7.70 87.66 0.67 10.64 16 18 O -0.59 -16.82 15.39 -3.01 -0.05 -16.87 16 19 C -0.12 -1.34 4.02 29.85 0.12 -1.22 16 20 C -0.05 -0.70 4.66 29.85 0.14 -0.56 16 21 C -0.13 -1.59 5.15 -19.77 -0.10 -1.69 16 22 C -0.08 -0.70 9.86 22.47 0.22 -0.48 16 23 C -0.17 -1.39 10.11 22.36 0.23 -1.17 16 24 C 0.08 0.93 11.18 84.69 0.95 1.87 16 25 N -0.52 -8.88 10.36 -195.84 -2.03 -10.91 16 26 C 0.09 1.27 10.86 84.67 0.92 2.19 16 27 C 0.12 2.78 6.12 86.41 0.53 3.31 16 28 C -0.11 -2.98 4.87 30.42 0.15 -2.83 16 29 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 30 H 0.03 1.18 6.78 -2.39 -0.02 1.17 16 31 H 0.02 0.91 3.81 -2.39 -0.01 0.90 16 32 H 0.09 2.06 6.18 -2.39 -0.01 2.04 16 33 H 0.09 2.04 7.98 -2.38 -0.02 2.02 16 34 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 35 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 36 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 0.67 5.91 -2.39 -0.01 0.65 16 39 H 0.09 0.86 7.62 -2.39 -0.02 0.84 16 40 H 0.12 0.71 7.93 -2.39 -0.02 0.69 16 41 H 0.11 0.91 7.70 -2.39 -0.02 0.89 16 42 H 0.07 1.11 8.05 -2.39 -0.02 1.09 16 43 H 0.08 1.08 8.05 -2.39 -0.02 1.07 16 44 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.16 0.41 8.06 -2.91 -0.02 0.38 16 46 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 48 H 0.07 1.99 6.99 -2.39 -0.02 1.98 16 49 H 0.08 1.71 6.56 -2.39 -0.02 1.70 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.05 1.83 7.82 -2.39 -0.02 1.81 16 Total: -1.00 -82.28 387.79 2.75 -79.52 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.69 Total: 7.69 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.88 Total: -6.05 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.45 Total: -120.38 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.05 Total: -16.87 kcal Atomic # 14 Polarization: 54.39 SS G_CDS: 1.68 Total: 56.08 kcal Total: -82.28 2.75 -79.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035206021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.066 kcal (2) G-P(sol) polarization free energy of solvation -82.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds