Wall clock time and date at job start Wed Apr 1 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99630 * 2 1 4 4 H 1.48505 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47692 * 300.00090 * 3 2 1 6 6 H 1.48503 * 109.47066 * 60.00391 * 3 2 1 7 7 C 1.38807 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99969 * 198.46206 * 7 2 1 9 9 N 1.36935 * 120.00482 * 18.46150 * 7 2 1 10 10 C 1.46926 * 120.63249 * 212.18035 * 9 7 2 11 11 C 1.53195 * 108.77459 * 233.58461 * 10 9 7 12 12 C 1.53042 * 109.31295 * 305.36705 * 11 10 9 13 13 C 1.52996 * 109.45902 * 181.38391 * 12 11 10 14 14 H 1.09003 * 109.50175 * 299.90986 * 13 12 11 15 15 C 1.53046 * 109.49744 * 59.97304 * 13 12 11 16 16 C 1.53044 * 109.53632 * 181.35188 * 15 13 12 17 17 C 1.53196 * 109.31105 * 298.63012 * 16 15 13 18 18 N 1.46929 * 108.77162 * 54.63861 * 17 16 15 19 19 C 1.34778 * 120.62766 * 126.37035 * 18 17 16 20 20 O 1.21556 * 120.00060 * 354.20604 * 19 18 17 21 21 C 1.47836 * 120.00139 * 174.48290 * 19 18 17 22 22 C 1.40021 * 120.56412 * 145.98397 * 21 19 18 23 23 C 1.38347 * 118.29140 * 179.97438 * 22 21 19 24 24 C 1.38348 * 119.30598 * 0.02562 * 23 22 21 25 25 N 1.31930 * 121.07603 * 359.97438 * 24 23 22 26 26 C 1.31693 * 121.88206 * 359.72321 * 25 24 23 27 27 C 1.46920 * 118.73989 * 306.63966 * 18 17 16 28 28 C 1.53038 * 109.52621 * 61.37231 * 12 11 10 29 29 C 1.46927 * 120.62627 * 32.15795 * 9 7 2 30 30 H 0.96999 * 120.00206 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.58535 * 113.80340 * 10 9 7 32 32 H 1.08999 * 109.58721 * 353.37151 * 10 9 7 33 33 H 1.08992 * 109.49640 * 185.41389 * 11 10 9 34 34 H 1.08996 * 109.49597 * 65.31817 * 11 10 9 35 35 H 1.08999 * 109.45800 * 301.35564 * 12 11 10 36 36 H 1.08992 * 109.45865 * 61.32884 * 15 13 12 37 37 H 1.09001 * 109.44584 * 301.35879 * 15 13 12 38 38 H 1.09000 * 109.49435 * 178.68526 * 16 15 13 39 39 H 1.08991 * 109.50235 * 58.58356 * 16 15 13 40 40 H 1.09007 * 109.58534 * 294.85153 * 17 16 15 41 41 H 1.08996 * 109.58209 * 174.42750 * 17 16 15 42 42 H 1.08006 * 120.85200 * 0.02562 * 22 21 19 43 43 H 1.08008 * 120.34792 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.46339 * 180.02562 * 24 23 22 45 45 H 1.07996 * 119.71719 * 180.26775 * 26 25 24 46 46 H 1.08998 * 109.58342 * 173.14472 * 27 18 17 47 47 H 1.08999 * 109.58952 * 293.57058 * 27 18 17 48 48 H 1.09000 * 109.50226 * 58.57693 * 28 12 11 49 49 H 1.09000 * 109.49463 * 178.67449 * 28 12 11 50 50 H 1.09001 * 109.58667 * 246.20256 * 29 9 7 51 51 H 1.09004 * 109.58896 * 6.62930 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0486 -1.2263 0.2956 9 7 1.3785 -2.3574 -0.3766 10 6 1.7513 -3.6446 0.2257 11 6 2.0809 -4.6361 -0.8947 12 6 0.8998 -4.7146 -1.8648 13 6 1.2114 -5.7297 -2.9662 14 1 2.1042 -5.4166 -3.5076 15 6 1.4501 -7.1056 -2.3401 16 6 1.7951 -8.1146 -3.4380 17 6 0.6185 -8.2246 -4.4129 18 7 0.2888 -6.8816 -4.9094 19 6 0.2269 -6.6350 -6.2330 20 8 0.5468 -7.4975 -7.0276 21 6 -0.2243 -5.3135 -6.7184 22 6 0.3184 -4.7600 -7.8845 23 6 -0.1384 -3.5207 -8.2962 24 6 -1.1071 -2.8738 -7.5498 25 7 -1.6005 -3.4198 -6.4547 26 6 -1.2023 -4.5994 -6.0254 27 6 0.0338 -5.8113 -3.9358 28 6 0.6606 -3.3392 -2.4918 29 6 0.3146 -2.3331 -1.3896 30 1 -0.4850 0.8400 0.0004 31 1 0.9192 -4.0257 0.8177 32 1 2.6250 -3.5103 0.8634 33 1 2.2657 -5.6210 -0.4661 34 1 2.9689 -4.2990 -1.4293 35 1 0.0064 -5.0277 -1.3245 36 1 0.5487 -7.4291 -1.8198 37 1 2.2760 -7.0436 -1.6315 38 1 1.9878 -9.0890 -2.9890 39 1 2.6822 -7.7790 -3.9749 40 1 -0.2448 -8.6458 -3.8976 41 1 0.8959 -8.8657 -5.2495 42 1 1.0736 -5.2874 -8.4484 43 1 0.2570 -3.0631 -9.1911 44 1 -1.4659 -1.9065 -7.8691 45 1 -1.6331 -5.0153 -5.1267 46 1 -0.0744 -4.8606 -4.4579 47 1 -0.8782 -6.0317 -3.3809 48 1 1.5622 -3.0143 -3.0112 49 1 -0.1655 -3.4010 -3.2002 50 1 -0.6347 -2.6071 -0.9293 51 1 0.2403 -1.3333 -1.8177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047220367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:40 Heat of formation + Delta-G solvation = 20.039459 kcal Electronic energy + Delta-G solvation = -31242.901516 eV Core-core repulsion = 27335.379764 eV Total energy + Delta-G solvation = -3907.521752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.16230 -39.64013 -38.47426 -36.76134 -34.03777 -33.30622 -32.71085 -31.69268 -31.08431 -29.89295 -29.08685 -26.23181 -25.33495 -24.28981 -23.88301 -23.00366 -22.15606 -21.33587 -20.30799 -19.64757 -19.08995 -17.78313 -17.29636 -16.72644 -16.58805 -16.03879 -15.32536 -14.90435 -14.76717 -14.68479 -14.22889 -14.05274 -13.91667 -13.73663 -13.53944 -13.47367 -13.36770 -13.05549 -12.97026 -12.81936 -12.45612 -12.21894 -12.11152 -11.49720 -11.43292 -11.17710 -10.99990 -10.89177 -10.74984 -10.60734 -10.45164 -10.30266 -10.16632 -10.15225 -10.14189 -9.86866 -9.62414 -9.48569 -9.32962 -9.27466 -8.77574 -8.45185 -6.59051 -5.78204 -3.22886 0.47387 0.96713 2.51346 2.74823 3.36822 3.45205 3.47415 3.56867 4.04133 4.28013 4.50795 4.52684 4.58508 4.62904 4.71842 4.78957 4.81997 4.87677 5.13195 5.15523 5.21160 5.34417 5.37727 5.40189 5.41000 5.54719 5.61806 5.62939 5.69557 5.72019 5.74691 5.82034 5.89589 5.91957 6.04887 6.08492 6.19580 6.25616 6.31653 6.34807 6.38081 6.55049 6.62311 6.71807 6.82008 6.86951 7.03078 7.13927 7.35581 7.61833 7.64367 7.83056 7.89010 8.49239 9.23515 9.86636 10.46509 11.29974 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.003578 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.609641 B = 7823.299537 C = 9855.339900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.062 0.938 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.126 4.126 12 C -0.070 4.070 13 C -0.095 4.095 14 H 0.071 0.929 15 C -0.117 4.117 16 C -0.134 4.134 17 C 0.111 3.889 18 N -0.602 5.602 19 C 0.567 3.433 20 O -0.541 6.541 21 C -0.187 4.187 22 C -0.022 4.022 23 C -0.180 4.180 24 C 0.122 3.878 25 N -0.481 5.481 26 C 0.132 3.868 27 C 0.094 3.906 28 C -0.136 4.136 29 C 0.176 3.824 30 H 0.253 0.747 31 H 0.015 0.985 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.162 0.838 45 H 0.167 0.833 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.046 0.954 50 H 0.018 0.982 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -13.962 -12.838 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.314 5.314 10 C 0.019 3.981 11 C -0.166 4.166 12 C -0.089 4.089 13 C -0.115 4.115 14 H 0.090 0.910 15 C -0.155 4.155 16 C -0.172 4.172 17 C -0.010 4.010 18 N -0.334 5.334 19 C 0.355 3.645 20 O -0.419 6.419 21 C -0.192 4.192 22 C -0.048 4.048 23 C -0.199 4.199 24 C -0.035 4.035 25 N -0.189 5.189 26 C -0.026 4.026 27 C -0.028 4.028 28 C -0.175 4.175 29 C 0.050 3.950 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.179 0.821 45 H 0.183 0.817 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.341 -13.828 -12.765 18.866 hybrid contribution 1.063 0.559 -0.408 1.268 sum -0.278 -13.269 -13.173 18.699 Atomic orbital electron populations 1.70064 1.05323 1.25428 1.53248 1.25105 0.95161 0.98462 1.00415 0.86322 0.79554 0.84193 0.77294 1.20225 1.21530 1.21697 1.19149 0.92880 0.85129 1.41513 0.92039 1.44001 1.42564 1.02107 1.42687 1.20904 0.97487 0.86948 0.92771 1.22084 0.97475 0.98845 0.98147 1.21025 0.98839 0.94295 0.94726 1.21533 0.97840 0.95729 0.96360 0.91046 1.21661 1.02303 0.94052 0.97466 1.21925 0.98114 1.00103 0.97060 1.21658 0.97823 0.83291 0.98277 1.48031 1.68833 1.11445 1.05118 1.18109 0.77426 0.86857 0.82084 1.90761 1.49415 1.47062 1.54661 1.20927 1.02318 0.97059 0.98935 1.21643 0.96409 0.94011 0.92770 1.22157 0.99515 0.96000 1.02275 1.23072 0.91660 0.99202 0.89518 1.67799 1.26411 1.10845 1.13818 1.23329 0.92141 0.89753 0.97410 1.22398 0.98954 0.90624 0.90858 1.22270 1.00116 0.95735 0.99420 1.20640 0.89826 0.97182 0.87314 0.93716 0.96669 0.93037 0.92995 0.92579 0.91648 0.91708 0.90857 0.90734 0.91600 0.91216 0.89063 0.83993 0.83975 0.82067 0.81657 0.88396 0.90641 0.92893 0.93500 0.96353 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 11.61 55.49 0.64 -25.38 16 2 C 0.01 0.22 4.84 -17.43 -0.08 0.14 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.26 -7.04 9.52 -15.06 -0.14 -7.18 16 8 H 0.06 1.67 7.90 -52.49 -0.41 1.26 16 9 N -0.59 -14.57 2.97 -172.31 -0.51 -15.08 16 10 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 11 C -0.13 -2.05 5.05 -26.61 -0.13 -2.18 16 12 C -0.07 -1.04 1.74 -90.58 -0.16 -1.20 16 13 C -0.10 -1.15 1.91 -90.72 -0.17 -1.32 16 14 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.12 -1.20 4.86 -26.68 -0.13 -1.33 16 16 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16 17 C 0.11 1.11 6.44 -3.71 -0.02 1.08 16 18 N -0.60 -6.87 2.98 -174.15 -0.52 -7.39 16 19 C 0.57 7.42 7.42 -12.33 -0.09 7.33 16 20 O -0.54 -8.46 16.27 5.32 0.09 -8.37 16 21 C -0.19 -2.25 5.33 -104.82 -0.56 -2.81 16 22 C -0.02 -0.23 9.75 -38.87 -0.38 -0.61 16 23 C -0.18 -1.60 10.10 -39.50 -0.40 -1.99 16 24 C 0.12 1.22 11.17 -17.47 -0.20 1.03 16 25 N -0.48 -6.02 10.35 -12.91 -0.13 -6.15 16 26 C 0.13 1.56 8.55 -17.13 -0.15 1.41 16 27 C 0.09 1.05 3.51 -3.94 -0.01 1.03 16 28 C -0.14 -2.43 5.05 -26.61 -0.13 -2.56 16 29 C 0.18 4.08 5.29 -3.71 -0.02 4.06 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 33 H 0.05 0.71 6.33 -51.93 -0.33 0.38 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.76 6.33 -51.93 -0.33 0.44 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 42 H 0.14 1.35 8.04 -52.48 -0.42 0.93 16 43 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.17 1.76 5.94 -52.49 -0.31 1.45 16 46 H 0.10 1.17 2.98 -51.93 -0.15 1.02 16 47 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.05 0.75 6.50 -51.93 -0.34 0.42 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 1.97 6.43 -51.93 -0.33 1.63 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -32.25 387.48 -10.63 -42.88 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.03 Total: 0.61 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.97 Total: -3.54 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.52 Total: -54.00 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.25 -10.63 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047220367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.917 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds