Wall clock time and date at job start Wed Apr 1 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.46818 * 124.36256 * 90.00263 * 11 10 9 13 13 C 1.54584 * 105.49832 * 196.91997 * 12 11 10 14 14 C 1.54133 * 101.65036 * 335.01869 * 13 12 11 15 15 C 1.52540 * 110.08411 * 265.34748 * 14 13 12 16 16 C 1.53146 * 109.32155 * 181.89957 * 15 14 13 17 17 N 1.46854 * 109.45434 * 58.25226 * 16 15 14 18 18 C 1.46897 * 110.99770 * 173.65167 * 17 16 15 19 19 C 1.50698 * 109.47426 * 294.35996 * 18 17 16 20 20 C 1.38665 * 120.42203 * 89.99556 * 19 18 17 21 21 C 1.38631 * 118.42317 * 180.02562 * 20 19 18 22 22 C 1.38230 * 119.15912 * 359.97438 * 21 20 19 23 23 N 1.31855 * 120.76320 * 0.02562 * 22 21 20 24 24 C 1.31888 * 121.72635 * 359.69604 * 23 22 21 25 25 C 1.46857 * 111.31163 * 297.83009 * 17 16 15 26 26 C 1.52547 * 110.08584 * 143.30251 * 14 13 12 27 27 C 1.34570 * 124.36026 * 269.69851 * 11 10 9 28 28 O 1.21281 * 125.03265 * 359.30494 * 27 11 10 29 29 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 31 31 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 32 32 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 33 33 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 34 34 H 1.09006 * 110.24293 * 315.92728 * 12 11 10 35 35 H 1.09005 * 110.24227 * 77.82903 * 12 11 10 36 36 H 1.09000 * 110.99350 * 93.10535 * 13 12 11 37 37 H 1.09003 * 110.99329 * 216.93203 * 13 12 11 38 38 H 1.09004 * 109.49876 * 301.85294 * 15 14 13 39 39 H 1.08999 * 109.49605 * 61.94649 * 15 14 13 40 40 H 1.09003 * 109.47107 * 298.26138 * 16 15 14 41 41 H 1.09002 * 109.47766 * 178.24720 * 16 15 14 42 42 H 1.09000 * 109.47087 * 54.35560 * 18 17 16 43 43 H 1.09004 * 109.47425 * 174.35369 * 18 17 16 44 44 H 1.07998 * 120.79234 * 359.97438 * 20 19 18 45 45 H 1.07994 * 120.42251 * 180.02562 * 21 20 19 46 46 H 1.07997 * 119.61658 * 179.97438 * 22 21 20 47 47 H 1.07996 * 119.61603 * 180.31975 * 24 23 22 48 48 H 1.08999 * 109.47799 * 302.19200 * 25 17 16 49 49 H 1.08996 * 109.47821 * 182.17507 * 25 17 16 50 50 H 1.09008 * 109.49200 * 298.06809 * 26 14 13 51 51 H 1.09003 * 109.49810 * 58.15461 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 1.0991 -5.6481 -1.2135 13 6 0.0187 -6.6522 -0.7507 14 6 0.3878 -6.8447 0.7333 15 6 1.2819 -8.0698 0.8961 16 6 1.5989 -8.2721 2.3806 17 7 0.3466 -8.4318 3.1308 18 6 0.6137 -8.7777 4.5333 19 6 1.2584 -10.1381 4.6014 20 6 2.6384 -10.2643 4.5526 21 6 3.1874 -11.5356 4.6178 22 6 2.3469 -12.6273 4.7291 23 7 1.0385 -12.4695 4.7727 24 6 0.4818 -11.2751 4.7186 25 6 -0.4898 -7.2285 3.0356 26 6 -0.8772 -6.9914 1.5731 27 6 1.1379 -5.5918 1.1094 28 8 1.3665 -5.2315 2.2447 29 1 -0.4851 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8896 32 1 2.8721 -3.6042 -0.8905 33 1 2.8721 -3.6043 0.8895 34 1 0.6801 -4.9513 -1.9395 35 1 1.9476 -6.1780 -1.6463 36 1 -0.9795 -6.2263 -0.8526 37 1 0.0986 -7.5915 -1.2979 38 1 0.7669 -8.9499 0.5109 39 1 2.2092 -7.9194 0.3433 40 1 2.1405 -7.4047 2.7580 41 1 2.2122 -9.1650 2.5029 42 1 1.2832 -8.0362 4.9692 43 1 -0.3240 -8.7917 5.0890 44 1 3.2705 -9.3931 4.4650 45 1 4.2582 -11.6713 4.5830 46 1 2.7667 -13.6211 4.7801 47 1 -0.5935 -11.1850 4.7622 48 1 0.0668 -6.3685 3.4080 49 1 -1.3913 -7.3643 3.6329 50 1 -1.4718 -6.0810 1.4972 51 1 -1.4594 -7.8380 1.2090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272947708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:28 Heat of formation + Delta-G solvation = -0.585794 kcal Electronic energy + Delta-G solvation = -30503.925077 eV Core-core repulsion = 26595.508946 eV Total energy + Delta-G solvation = -3908.416130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.09605 -40.36715 -37.94038 -36.10445 -34.88819 -33.33652 -32.50703 -31.83200 -30.94489 -30.29222 -28.50643 -26.72782 -25.18560 -24.23463 -23.98384 -23.20564 -21.97933 -21.81696 -21.04172 -20.16324 -18.27600 -17.30857 -16.71297 -16.59758 -16.28935 -15.79335 -15.70541 -15.37024 -14.89854 -14.59868 -14.48189 -14.39559 -14.01415 -13.80203 -13.54078 -13.31642 -13.28885 -13.14960 -12.82171 -12.64078 -12.41596 -12.27703 -12.16502 -11.90128 -11.89214 -11.71415 -11.37331 -11.22826 -11.08280 -10.98410 -10.70551 -10.41049 -10.29876 -10.02169 -10.00131 -9.89526 -9.68651 -9.33714 -9.24896 -9.06952 -8.41117 -8.22983 -8.03017 -6.05790 -4.09336 0.86053 1.03088 3.01623 3.27866 3.35124 3.38847 3.47948 3.56306 3.98401 4.21696 4.38749 4.42514 4.49506 4.52243 4.58526 4.67563 4.75516 4.77265 4.97007 5.05622 5.09155 5.20931 5.28096 5.30466 5.36606 5.44055 5.47653 5.51908 5.56629 5.62319 5.71729 5.76092 5.79105 5.84718 5.85685 5.93591 5.98216 6.02544 6.05993 6.06574 6.16691 6.30500 6.43562 6.45450 6.77679 6.94421 7.00626 7.03096 7.49401 7.64134 7.74066 7.83004 7.94025 8.30297 8.67620 8.97630 9.54934 11.05613 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002269 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.498362 B =12339.015557 C =12658.116938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.128 3.872 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.125 4.125 14 C -0.094 4.094 15 C -0.089 4.089 16 C 0.047 3.953 17 N -0.529 5.529 18 C 0.096 3.904 19 C -0.121 4.121 20 C -0.071 4.071 21 C -0.174 4.174 22 C 0.092 3.908 23 N -0.487 5.487 24 C 0.117 3.883 25 C 0.042 3.958 26 C -0.089 4.089 27 C 0.523 3.477 28 O -0.530 6.530 29 H 0.261 0.739 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.155 0.845 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -24.119 3.955 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.007 3.993 11 N -0.343 5.343 12 C -0.023 4.023 13 C -0.162 4.162 14 C -0.098 4.098 15 C -0.127 4.127 16 C -0.081 4.081 17 N -0.254 5.254 18 C -0.033 4.033 19 C -0.124 4.124 20 C -0.098 4.098 21 C -0.193 4.193 22 C -0.065 4.065 23 N -0.196 5.196 24 C -0.040 4.040 25 C -0.085 4.085 26 C -0.127 4.127 27 C 0.309 3.691 28 O -0.407 6.407 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.170 0.830 47 H 0.172 0.828 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.877 -24.825 4.392 25.226 hybrid contribution 1.468 2.501 0.059 2.901 sum 2.345 -22.325 4.450 22.884 Atomic orbital electron populations 1.69977 1.06099 1.26615 1.50426 1.25006 0.94863 0.99340 0.95109 0.86499 0.80081 0.83578 0.77619 1.19671 1.20967 1.20932 1.21120 0.93054 0.90686 1.51202 0.92466 1.19394 0.94399 0.91039 0.97666 1.21788 0.95084 0.81111 1.01267 1.48593 1.56304 1.23141 1.06256 1.22049 0.97024 0.94653 0.88577 1.22682 0.99632 0.99796 0.94137 1.21068 0.97163 0.94980 0.96586 1.21365 0.98998 0.96206 0.96151 1.22211 0.91324 1.00772 0.93753 1.61989 1.17098 1.36318 1.09956 1.20931 1.00187 0.91775 0.90360 1.20808 0.94087 0.96982 1.00509 1.21577 0.94735 0.97898 0.95553 1.22124 1.01442 0.93486 1.02282 1.22743 0.89112 0.99063 0.95560 1.67712 1.13246 1.26366 1.12249 1.22651 1.00374 0.86798 0.94213 1.22307 0.97175 0.91892 0.97097 1.21356 0.95135 1.02179 0.94054 1.20447 0.79177 0.84631 0.84803 1.90617 1.57656 1.71602 1.20868 0.92966 0.96490 0.96176 0.91740 0.91256 0.90167 0.91730 0.89791 0.89459 0.90265 0.91416 0.93370 0.90977 0.93452 0.89531 0.85075 0.84908 0.83000 0.82763 0.91322 0.90992 0.90972 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 10 C 0.13 2.68 5.88 -4.04 -0.02 2.65 16 11 N -0.61 -10.85 2.94 -172.46 -0.51 -11.36 16 12 C 0.10 1.33 7.35 -3.04 -0.02 1.31 16 13 C -0.12 -1.37 6.21 -25.31 -0.16 -1.53 16 14 C -0.09 -1.22 0.55 -155.49 -0.09 -1.30 16 15 C -0.09 -1.00 4.76 -26.89 -0.13 -1.13 16 16 C 0.05 0.56 4.97 -3.77 -0.02 0.54 16 17 N -0.53 -5.99 4.63 -235.96 -1.09 -7.09 16 18 C 0.10 0.95 5.14 -4.98 -0.03 0.93 16 19 C -0.12 -1.17 4.89 -104.48 -0.51 -1.68 16 20 C -0.07 -0.63 8.04 -39.28 -0.32 -0.95 16 21 C -0.17 -1.37 10.11 -39.44 -0.40 -1.77 16 22 C 0.09 0.80 11.18 -17.54 -0.20 0.60 16 23 N -0.49 -5.21 10.36 -13.25 -0.14 -5.35 16 24 C 0.12 1.16 10.86 -17.55 -0.19 0.97 16 25 C 0.04 0.53 5.24 -3.77 -0.02 0.51 16 26 C -0.09 -1.10 4.78 -26.89 -0.13 -1.22 16 27 C 0.52 9.25 6.32 -11.03 -0.07 9.19 16 28 O -0.53 -11.20 13.82 5.56 0.08 -11.13 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.92 7.89 -51.93 -0.41 0.51 16 37 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.70 6.65 -51.93 -0.35 0.36 16 41 H 0.07 0.78 5.73 -51.93 -0.30 0.49 16 42 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 44 H 0.13 1.07 7.98 -52.49 -0.42 0.65 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 48 H 0.07 1.09 5.79 -51.93 -0.30 0.79 16 49 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 50 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -33.67 399.41 -11.23 -44.90 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.45 Total: -0.31 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.85 Total: -6.15 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -1.00 Total: -49.95 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.67 -11.23 -44.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272947708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.318 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds