Wall clock time and date at job start Wed Apr 1 2020 03:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.46818 * 124.36256 * 90.00263 * 11 10 9 13 13 C 1.54584 * 105.49832 * 196.91997 * 12 11 10 14 14 C 1.54133 * 101.65036 * 335.01869 * 13 12 11 15 15 C 1.52540 * 110.08411 * 265.34748 * 14 13 12 16 16 C 1.53146 * 109.32155 * 181.89957 * 15 14 13 17 17 N 1.46854 * 109.45434 * 58.25226 * 16 15 14 18 18 C 1.46897 * 110.99770 * 173.65167 * 17 16 15 19 19 C 1.50698 * 109.47426 * 294.35996 * 18 17 16 20 20 C 1.38665 * 120.42203 * 89.99556 * 19 18 17 21 21 C 1.38631 * 118.42317 * 180.02562 * 20 19 18 22 22 C 1.38230 * 119.15912 * 359.97438 * 21 20 19 23 23 N 1.31855 * 120.76320 * 0.02562 * 22 21 20 24 24 C 1.31888 * 121.72635 * 359.69604 * 23 22 21 25 25 C 1.46857 * 111.31163 * 297.83009 * 17 16 15 26 26 C 1.52547 * 110.08584 * 143.30251 * 14 13 12 27 27 C 1.34570 * 124.36026 * 269.69851 * 11 10 9 28 28 O 1.21281 * 125.03265 * 359.30494 * 27 11 10 29 29 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 31 31 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 32 32 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 33 33 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 34 34 H 1.09006 * 110.24293 * 315.92728 * 12 11 10 35 35 H 1.09005 * 110.24227 * 77.82903 * 12 11 10 36 36 H 1.09000 * 110.99350 * 93.10535 * 13 12 11 37 37 H 1.09003 * 110.99329 * 216.93203 * 13 12 11 38 38 H 1.09004 * 109.49876 * 301.85294 * 15 14 13 39 39 H 1.08999 * 109.49605 * 61.94649 * 15 14 13 40 40 H 1.09003 * 109.47107 * 298.26138 * 16 15 14 41 41 H 1.09002 * 109.47766 * 178.24720 * 16 15 14 42 42 H 1.09000 * 109.47087 * 54.35560 * 18 17 16 43 43 H 1.09004 * 109.47425 * 174.35369 * 18 17 16 44 44 H 1.07998 * 120.79234 * 359.97438 * 20 19 18 45 45 H 1.07994 * 120.42251 * 180.02562 * 21 20 19 46 46 H 1.07997 * 119.61658 * 179.97438 * 22 21 20 47 47 H 1.07996 * 119.61603 * 180.31975 * 24 23 22 48 48 H 1.08999 * 109.47799 * 302.19200 * 25 17 16 49 49 H 1.08996 * 109.47821 * 182.17507 * 25 17 16 50 50 H 1.09008 * 109.49200 * 298.06809 * 26 14 13 51 51 H 1.09003 * 109.49810 * 58.15461 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 1.0991 -5.6481 -1.2135 13 6 0.0187 -6.6522 -0.7507 14 6 0.3878 -6.8447 0.7333 15 6 1.2819 -8.0698 0.8961 16 6 1.5989 -8.2721 2.3806 17 7 0.3466 -8.4318 3.1308 18 6 0.6137 -8.7777 4.5333 19 6 1.2584 -10.1381 4.6014 20 6 2.6384 -10.2643 4.5526 21 6 3.1874 -11.5356 4.6178 22 6 2.3469 -12.6273 4.7291 23 7 1.0385 -12.4695 4.7727 24 6 0.4818 -11.2751 4.7186 25 6 -0.4898 -7.2285 3.0356 26 6 -0.8772 -6.9914 1.5731 27 6 1.1379 -5.5918 1.1094 28 8 1.3665 -5.2315 2.2447 29 1 -0.4851 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8896 32 1 2.8721 -3.6042 -0.8905 33 1 2.8721 -3.6043 0.8895 34 1 0.6801 -4.9513 -1.9395 35 1 1.9476 -6.1780 -1.6463 36 1 -0.9795 -6.2263 -0.8526 37 1 0.0986 -7.5915 -1.2979 38 1 0.7669 -8.9499 0.5109 39 1 2.2092 -7.9194 0.3433 40 1 2.1405 -7.4047 2.7580 41 1 2.2122 -9.1650 2.5029 42 1 1.2832 -8.0362 4.9692 43 1 -0.3240 -8.7917 5.0890 44 1 3.2705 -9.3931 4.4650 45 1 4.2582 -11.6713 4.5830 46 1 2.7667 -13.6211 4.7801 47 1 -0.5935 -11.1850 4.7622 48 1 0.0668 -6.3685 3.4080 49 1 -1.3913 -7.3643 3.6329 50 1 -1.4718 -6.0810 1.4972 51 1 -1.4594 -7.8380 1.2090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272947708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:27 Heat of formation + Delta-G solvation = -21.930342 kcal Electronic energy + Delta-G solvation = -30504.850646 eV Core-core repulsion = 26595.508946 eV Total energy + Delta-G solvation = -3909.341699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.24078 -41.11258 -38.99633 -37.50756 -36.25316 -35.03055 -33.55001 -32.77180 -31.90012 -31.68741 -29.86631 -27.69602 -26.95424 -25.32304 -24.74845 -24.06925 -23.61235 -22.73491 -22.05887 -21.52659 -19.56645 -18.70908 -17.95517 -17.45351 -17.32892 -17.13438 -16.79420 -16.48489 -16.35782 -16.06068 -15.59185 -15.33535 -14.96487 -14.78898 -14.71276 -14.47939 -14.44554 -14.19961 -14.00655 -13.91125 -13.86538 -13.41804 -13.35219 -13.14855 -12.96870 -12.88550 -12.80000 -12.58216 -12.51769 -12.14879 -12.05498 -11.97263 -11.85575 -11.42481 -11.34901 -11.24754 -10.71813 -10.64846 -10.50338 -10.35445 -9.93164 -9.53589 -9.24389 -8.26956 -6.39926 0.18631 0.34704 1.36387 1.37714 1.50827 1.64966 2.17346 2.39292 2.73644 3.06420 3.13961 3.31549 3.49277 3.56669 3.68916 3.83472 3.91378 3.99493 4.03568 4.08558 4.11442 4.25491 4.29779 4.32642 4.44244 4.47818 4.53970 4.60470 4.63089 4.66735 4.70604 4.75803 4.78246 4.84336 4.88263 4.91341 4.96838 4.98217 5.08464 5.11705 5.20500 5.23390 5.28767 5.32757 5.35464 5.44073 5.58870 5.79941 5.80980 6.04489 6.06407 6.12634 6.34450 6.75688 7.06459 7.27385 7.30657 8.85326 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002269 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.498362 B =12339.015557 C =12658.116938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C 0.143 3.857 11 N -0.622 5.622 12 C 0.092 3.908 13 C -0.113 4.113 14 C -0.086 4.086 15 C -0.084 4.084 16 C 0.050 3.950 17 N -0.519 5.519 18 C 0.097 3.903 19 C -0.127 4.127 20 C -0.081 4.081 21 C -0.168 4.168 22 C 0.086 3.914 23 N -0.511 5.511 24 C 0.109 3.891 25 C 0.044 3.956 26 C -0.088 4.088 27 C 0.507 3.493 28 O -0.576 6.576 29 H 0.265 0.735 30 H 0.000 1.000 31 H -0.028 1.028 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.013 0.987 41 H 0.085 0.915 42 H 0.032 0.968 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.159 0.841 46 H 0.178 0.822 47 H 0.164 0.836 48 H 0.027 0.973 49 H 0.087 0.913 50 H 0.053 0.947 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -26.295 2.476 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.012 4.012 10 C 0.021 3.979 11 N -0.353 5.353 12 C -0.029 4.029 13 C -0.150 4.150 14 C -0.089 4.089 15 C -0.122 4.122 16 C -0.078 4.078 17 N -0.243 5.243 18 C -0.031 4.031 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.188 4.188 22 C -0.070 4.070 23 N -0.220 5.220 24 C -0.048 4.048 25 C -0.083 4.083 26 C -0.126 4.126 27 C 0.296 3.704 28 O -0.456 6.456 29 H 0.073 0.927 30 H 0.018 0.982 31 H -0.010 1.010 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.031 0.969 41 H 0.103 0.897 42 H 0.050 0.950 43 H 0.117 0.883 44 H 0.151 0.849 45 H 0.177 0.823 46 H 0.195 0.805 47 H 0.181 0.819 48 H 0.046 0.954 49 H 0.105 0.895 50 H 0.072 0.928 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.761 -27.035 2.884 27.245 hybrid contribution 1.199 3.162 0.584 3.432 sum 2.960 -23.873 3.469 24.304 Atomic orbital electron populations 1.70115 1.07957 1.27885 1.51224 1.26029 0.95813 1.03619 0.94400 0.85321 0.79112 0.78288 0.77849 1.18289 1.19803 1.20714 1.21568 0.93698 0.91826 1.51169 0.91641 1.19187 0.94507 0.93124 0.94372 1.21309 0.93890 0.81329 1.01372 1.48725 1.56060 1.22170 1.08394 1.22397 0.98995 0.94899 0.86651 1.22763 0.98673 1.00997 0.92582 1.21082 0.96902 0.92934 0.97992 1.21413 0.99231 0.95988 0.95544 1.22183 0.91373 0.99743 0.94491 1.62070 1.16646 1.34870 1.10679 1.20941 1.00571 0.91857 0.89729 1.20721 0.94454 0.96386 1.01412 1.21741 0.94635 0.98686 0.95685 1.22397 1.02775 0.92634 1.00966 1.23226 0.88643 1.00506 0.94656 1.67740 1.14431 1.26674 1.13168 1.22805 1.00961 0.86699 0.94340 1.22232 0.97429 0.90979 0.97675 1.21383 0.94957 1.02468 0.93783 1.21468 0.78771 0.86103 0.84043 1.90593 1.59144 1.73108 1.22793 0.92662 0.98184 1.01002 0.89409 0.93179 0.90701 0.88624 0.89854 0.85134 0.87503 0.90718 0.96896 0.89704 0.95007 0.88348 0.84925 0.82319 0.80528 0.81858 0.95432 0.89484 0.92820 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.43 5.30 29.85 0.16 1.59 16 10 C 0.14 6.20 5.88 86.38 0.51 6.71 16 11 N -0.62 -22.46 2.94 -818.06 -2.40 -24.87 16 12 C 0.09 2.28 7.35 86.86 0.64 2.92 16 13 C -0.11 -2.15 6.21 31.52 0.20 -1.96 16 14 C -0.09 -2.11 0.55 -52.82 -0.03 -2.14 16 15 C -0.08 -1.68 4.76 30.49 0.15 -1.53 16 16 C 0.05 1.16 4.97 86.36 0.43 1.59 16 17 N -0.52 -11.48 4.63 -900.46 -4.17 -15.65 16 18 C 0.10 1.95 5.14 85.56 0.44 2.39 16 19 C -0.13 -2.35 4.89 -19.78 -0.10 -2.45 16 20 C -0.08 -1.36 8.04 22.47 0.18 -1.18 16 21 C -0.17 -2.30 10.11 22.36 0.23 -2.07 16 22 C 0.09 1.31 11.18 84.69 0.95 2.26 16 23 N -0.51 -10.15 10.36 -195.84 -2.03 -12.18 16 24 C 0.11 2.03 10.86 84.67 0.92 2.95 16 25 C 0.04 1.14 5.24 86.36 0.45 1.59 16 26 C -0.09 -2.10 4.78 30.49 0.15 -1.95 16 27 C 0.51 18.59 6.32 87.72 0.55 19.15 16 28 O -0.58 -26.22 13.82 -3.03 -0.04 -26.27 16 29 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.05 2.34 7.92 -2.39 -0.02 2.32 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.08 1.64 7.89 -2.39 -0.02 1.62 16 37 H 0.13 1.45 7.87 -2.39 -0.02 1.43 16 38 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.01 0.39 6.65 -2.39 -0.02 0.38 16 41 H 0.08 1.74 5.73 -2.39 -0.01 1.72 16 42 H 0.03 0.73 8.08 -2.39 -0.02 0.72 16 43 H 0.10 1.70 7.93 -2.38 -0.02 1.68 16 44 H 0.13 2.13 7.98 -2.91 -0.02 2.11 16 45 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 46 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 47 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 48 H 0.03 0.95 5.79 -2.39 -0.01 0.94 16 49 H 0.09 1.91 8.01 -2.39 -0.02 1.89 16 50 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 51 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -78.01 399.41 1.08 -76.94 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.90 Total: 15.81 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 6.51 Total: -3.02 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -8.32 Total: -110.24 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.27 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -78.01 1.08 -76.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272947708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.005 kcal (2) G-P(sol) polarization free energy of solvation -78.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds