Wall clock time and date at job start Wed Apr 1 2020 03:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00408 * 2 1 4 4 H 1.48509 * 109.46919 * 240.00447 * 3 2 1 5 5 H 1.48500 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47381 * 120.00162 * 3 2 1 7 7 C 1.38821 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00058 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47196 * 325.00019 * 10 9 7 12 12 C 1.52990 * 109.47145 * 205.00064 * 10 9 7 13 13 N 1.46497 * 109.47353 * 55.00106 * 12 10 9 14 14 C 1.34784 * 120.00215 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99805 * 354.97874 * 14 13 12 16 16 C 1.50697 * 120.00201 * 174.98658 * 14 13 12 17 17 C 1.50706 * 110.01775 * 64.82232 * 16 14 13 18 18 C 1.38675 * 120.41999 * 5.72876 * 17 16 14 19 19 C 1.38623 * 118.42063 * 179.78541 * 18 17 16 20 20 C 1.38224 * 119.16226 * 0.46896 * 19 18 17 21 21 N 1.31854 * 120.76376 * 359.77210 * 20 19 18 22 22 C 1.31892 * 121.72430 * 359.97438 * 21 20 19 23 23 C 1.53873 * 110.02894 * 303.38168 * 16 14 13 24 24 C 1.54263 * 106.59655 * 240.71201 * 23 16 14 25 25 C 1.54886 * 104.19754 * 23.61542 * 24 23 16 26 26 C 1.54259 * 110.03204 * 186.21578 * 16 14 13 27 27 C 1.52999 * 109.46691 * 84.99916 * 10 9 7 28 28 C 1.53002 * 117.49871 * 231.25350 * 27 10 9 29 29 C 1.52998 * 117.50100 * 299.91405 * 27 10 9 30 30 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99558 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47325 * 174.99961 * 12 10 9 33 33 H 1.09008 * 109.47202 * 294.99950 * 12 10 9 34 34 H 0.96996 * 120.00419 * 0.02562 * 13 12 10 35 35 H 1.08002 * 120.78511 * 0.02562 * 18 17 16 36 36 H 1.08002 * 120.41559 * 180.26811 * 19 18 17 37 37 H 1.07996 * 119.62025 * 179.79742 * 20 19 18 38 38 H 1.07995 * 119.61357 * 179.97438 * 22 21 20 39 39 H 1.08999 * 110.03598 * 359.97438 * 23 16 14 40 40 H 1.08999 * 110.03172 * 121.43099 * 23 16 14 41 41 H 1.08999 * 110.49217 * 264.93224 * 24 23 16 42 42 H 1.09001 * 110.48358 * 142.28867 * 24 23 16 43 43 H 1.08998 * 110.75657 * 203.74411 * 25 24 23 44 44 H 1.09002 * 110.91612 * 80.43783 * 25 24 23 45 45 H 1.09005 * 110.48459 * 214.35286 * 26 16 14 46 46 H 1.08999 * 110.48640 * 336.85889 * 26 16 14 47 47 H 1.08998 * 115.54967 * 85.58912 * 27 10 9 48 48 H 1.09004 * 117.49959 * 215.00678 * 28 27 10 49 49 H 1.09000 * 117.50007 * 0.02562 * 28 27 10 50 50 H 1.08998 * 117.49782 * 359.97438 * 29 27 10 51 51 H 1.08997 * 117.49787 * 145.00273 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3882 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9685 -3.5508 -0.5889 12 6 1.1806 -4.7521 -0.6091 13 7 0.7340 -4.3355 -1.9406 14 6 -0.0559 -5.1473 -2.6712 15 8 -0.3226 -6.2590 -2.2663 16 6 -0.6076 -4.6737 -3.9912 17 6 0.5166 -4.4493 -4.9695 18 6 1.8180 -4.7914 -4.6342 19 6 2.8193 -4.5712 -5.5672 20 6 2.4911 -4.0129 -6.7883 21 7 1.2430 -3.6953 -7.0711 22 6 0.2643 -3.8952 -6.2099 23 6 -1.4032 -3.3716 -3.7931 24 6 -2.8492 -3.6661 -4.2424 25 6 -2.9867 -5.2020 -4.0974 26 6 -1.5980 -5.7140 -4.5537 27 6 2.4216 -4.0357 1.4376 28 6 3.8818 -4.3893 1.7268 29 6 3.3025 -3.0622 2.2233 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 1.7554 -5.6747 -0.6908 33 1 0.3130 -4.9200 0.0291 34 1 1.0068 -3.4755 -2.2967 35 1 2.0453 -5.2227 -3.6705 36 1 3.8433 -4.8297 -5.3415 37 1 3.2658 -3.8351 -7.5194 38 1 -0.7457 -3.6218 -6.4770 39 1 -1.3906 -3.0824 -2.7422 40 1 -0.9767 -2.5767 -4.4050 41 1 -2.9949 -3.3663 -5.2802 42 1 -3.5615 -3.1564 -3.5936 43 1 -3.7724 -5.5828 -4.7500 44 1 -3.1792 -5.4793 -3.0610 45 1 -1.5415 -5.7450 -5.6419 46 1 -1.3956 -6.6993 -4.1340 47 1 1.6537 -4.5775 1.9897 48 1 4.0746 -5.1638 2.4693 49 1 4.5834 -4.3517 0.8935 50 1 3.6232 -2.1522 1.7163 51 1 3.1141 -2.9637 3.2923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713117708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:34 Heat of formation + Delta-G solvation = 25.450082 kcal Electronic energy + Delta-G solvation = -31309.544756 eV Core-core repulsion = 27402.257626 eV Total energy + Delta-G solvation = -3907.287130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.14415 -39.37746 -37.83051 -36.95654 -34.74645 -33.53427 -32.82172 -31.70626 -30.94067 -28.79929 -28.55904 -27.56830 -24.28371 -23.54674 -23.07179 -22.56816 -21.75228 -21.16758 -20.63593 -19.89103 -18.98199 -17.72659 -17.27721 -16.87440 -16.14885 -15.64680 -15.53519 -15.17360 -15.05135 -14.72509 -14.39934 -14.15886 -14.02903 -13.86957 -13.40692 -13.28920 -13.14887 -12.99850 -12.92139 -12.47366 -12.13430 -11.68547 -11.42228 -11.38559 -11.21061 -11.11643 -11.02948 -10.92550 -10.90309 -10.87475 -10.75820 -10.57645 -10.19711 -9.98116 -9.83813 -9.81504 -9.60133 -9.37060 -9.25819 -9.02036 -8.96236 -8.67704 -7.09786 -5.86287 -3.15697 1.02648 1.22960 2.80983 3.36287 3.41584 3.43052 3.45119 3.72175 4.29670 4.36498 4.46748 4.55173 4.59155 4.63413 4.85457 4.91533 4.98676 5.05441 5.17221 5.24776 5.41609 5.45122 5.46198 5.46627 5.48313 5.56021 5.57502 5.66590 5.69045 5.70257 5.84076 5.93192 5.94614 5.97386 6.01035 6.04087 6.10209 6.12429 6.19099 6.20669 6.28923 6.35014 6.39252 6.50290 6.54887 6.62286 6.72111 6.84254 6.93086 7.59996 7.85484 7.90014 8.30479 8.47606 9.42959 9.96266 10.32520 11.35328 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.003945 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.005202 B = 7095.988275 C = 7556.426493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.193 3.807 11 H 0.054 0.946 12 C 0.117 3.883 13 N -0.711 5.711 14 C 0.526 3.474 15 O -0.546 6.546 16 C -0.037 4.037 17 C -0.115 4.115 18 C -0.074 4.074 19 C -0.165 4.165 20 C 0.091 3.909 21 N -0.482 5.482 22 C 0.109 3.891 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.155 4.155 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -10.540 -9.512 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.356 5.356 10 C 0.083 3.917 11 H 0.072 0.928 12 C -0.007 4.007 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.424 6.424 16 C -0.040 4.040 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.185 4.185 20 C -0.065 4.065 21 N -0.191 5.191 22 C -0.048 4.048 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.141 4.141 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.192 4.192 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.123 0.877 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.450 -10.774 -10.037 14.732 hybrid contribution 0.638 1.118 1.041 1.655 sum 1.088 -9.655 -8.996 13.242 Atomic orbital electron populations 1.69637 1.05005 1.25817 1.57065 1.24695 0.95426 0.97490 1.02742 0.86366 0.78644 0.83900 0.77844 1.21330 1.21728 1.21272 1.19086 0.90743 0.83834 1.43287 0.91278 1.42418 1.05762 0.99340 1.88089 1.20040 0.94286 0.86153 0.91239 0.92815 1.21620 0.98688 0.97574 0.82827 1.46076 1.50288 1.22096 1.17834 1.20148 0.78114 0.84878 0.85747 1.90646 1.59548 1.20115 1.72095 1.20369 0.94175 0.98215 0.91286 1.20583 0.94347 1.00387 0.96379 1.21727 0.92184 0.96283 0.99790 1.22130 1.00528 1.00818 0.94983 1.22750 0.93600 0.94726 0.95472 1.67716 1.00718 1.16456 1.34175 1.22535 0.98602 0.94634 0.89047 1.22369 0.94709 0.94414 1.03819 1.22375 0.96183 0.96147 1.01310 1.22497 0.96461 0.95278 1.01818 1.22423 0.92979 0.98700 1.00046 1.23030 0.92147 1.03089 0.99820 1.22960 0.97262 0.99851 1.03350 1.22776 1.03342 0.94019 0.99104 0.93421 0.78070 0.91643 0.91790 0.75175 0.84614 0.84708 0.82842 0.82726 0.89757 0.90470 0.91480 0.91061 0.91345 0.91103 0.91065 0.89410 0.89170 0.90095 0.89589 0.87719 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.00 13.06 55.49 0.72 -25.28 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -5.90 8.63 -15.06 -0.13 -6.03 16 8 H 0.07 1.68 6.91 -52.48 -0.36 1.32 16 9 N -0.72 -15.68 4.54 -53.43 -0.24 -15.92 16 10 C 0.19 3.43 2.70 -67.94 -0.18 3.24 16 11 H 0.05 0.97 7.84 -51.93 -0.41 0.56 16 12 C 0.12 1.89 5.22 -4.05 -0.02 1.87 16 13 N -0.71 -11.18 3.91 -60.30 -0.24 -11.41 16 14 C 0.53 8.22 4.90 -10.98 -0.05 8.17 16 15 O -0.55 -9.93 15.38 5.55 0.09 -9.84 16 16 C -0.04 -0.48 0.62 -155.70 -0.10 -0.58 16 17 C -0.11 -1.47 4.65 -104.48 -0.49 -1.96 16 18 C -0.07 -0.94 8.86 -39.28 -0.35 -1.29 16 19 C -0.16 -1.84 10.11 -39.44 -0.40 -2.24 16 20 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 21 N -0.48 -6.32 10.36 -13.26 -0.14 -6.46 16 22 C 0.11 1.35 9.25 -17.55 -0.16 1.19 16 23 C -0.12 -1.51 5.56 -25.62 -0.14 -1.66 16 24 C -0.12 -1.35 6.83 -25.08 -0.17 -1.52 16 25 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 26 C -0.10 -1.24 5.68 -25.08 -0.14 -1.39 16 27 C -0.16 -2.67 5.36 -90.62 -0.49 -3.16 16 28 C -0.20 -2.88 10.18 -26.69 -0.27 -3.15 16 29 C -0.16 -2.68 9.78 -26.69 -0.26 -2.94 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.41 6.83 7.83 -40.82 -0.32 6.51 16 35 H 0.14 1.80 6.07 -52.49 -0.32 1.48 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.16 1.64 7.85 -52.49 -0.41 1.23 16 39 H 0.08 1.31 7.47 -51.93 -0.39 0.92 16 40 H 0.08 1.00 7.04 -51.93 -0.37 0.64 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.75 7.35 -51.93 -0.38 0.37 16 46 H 0.09 1.19 6.77 -51.93 -0.35 0.84 16 47 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 48 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 50 H 0.10 2.03 6.23 -51.93 -0.32 1.71 16 51 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -28.72 404.93 -10.70 -39.41 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -8.15 Total: 19.58 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.82 Total: -12.41 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.11 Total: -59.06 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.72 -10.70 -39.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713117708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.865 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds