Wall clock time and date at job start Wed Apr 1 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00408 * 2 1 4 4 H 1.48509 * 109.46919 * 240.00447 * 3 2 1 5 5 H 1.48500 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47381 * 120.00162 * 3 2 1 7 7 C 1.38821 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00058 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47196 * 325.00019 * 10 9 7 12 12 C 1.52990 * 109.47145 * 205.00064 * 10 9 7 13 13 N 1.46497 * 109.47353 * 55.00106 * 12 10 9 14 14 C 1.34784 * 120.00215 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99805 * 354.97874 * 14 13 12 16 16 C 1.50697 * 120.00201 * 174.98658 * 14 13 12 17 17 C 1.50706 * 110.01775 * 64.82232 * 16 14 13 18 18 C 1.38675 * 120.41999 * 5.72876 * 17 16 14 19 19 C 1.38623 * 118.42063 * 179.78541 * 18 17 16 20 20 C 1.38224 * 119.16226 * 0.46896 * 19 18 17 21 21 N 1.31854 * 120.76376 * 359.77210 * 20 19 18 22 22 C 1.31892 * 121.72430 * 359.97438 * 21 20 19 23 23 C 1.53873 * 110.02894 * 303.38168 * 16 14 13 24 24 C 1.54263 * 106.59655 * 240.71201 * 23 16 14 25 25 C 1.54886 * 104.19754 * 23.61542 * 24 23 16 26 26 C 1.54259 * 110.03204 * 186.21578 * 16 14 13 27 27 C 1.52999 * 109.46691 * 84.99916 * 10 9 7 28 28 C 1.53002 * 117.49871 * 231.25350 * 27 10 9 29 29 C 1.52998 * 117.50100 * 299.91405 * 27 10 9 30 30 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99558 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47325 * 174.99961 * 12 10 9 33 33 H 1.09008 * 109.47202 * 294.99950 * 12 10 9 34 34 H 0.96996 * 120.00419 * 0.02562 * 13 12 10 35 35 H 1.08002 * 120.78511 * 0.02562 * 18 17 16 36 36 H 1.08002 * 120.41559 * 180.26811 * 19 18 17 37 37 H 1.07996 * 119.62025 * 179.79742 * 20 19 18 38 38 H 1.07995 * 119.61357 * 179.97438 * 22 21 20 39 39 H 1.08999 * 110.03598 * 359.97438 * 23 16 14 40 40 H 1.08999 * 110.03172 * 121.43099 * 23 16 14 41 41 H 1.08999 * 110.49217 * 264.93224 * 24 23 16 42 42 H 1.09001 * 110.48358 * 142.28867 * 24 23 16 43 43 H 1.08998 * 110.75657 * 203.74411 * 25 24 23 44 44 H 1.09002 * 110.91612 * 80.43783 * 25 24 23 45 45 H 1.09005 * 110.48459 * 214.35286 * 26 16 14 46 46 H 1.08999 * 110.48640 * 336.85889 * 26 16 14 47 47 H 1.08998 * 115.54967 * 85.58912 * 27 10 9 48 48 H 1.09004 * 117.49959 * 215.00678 * 28 27 10 49 49 H 1.09000 * 117.50007 * 0.02562 * 28 27 10 50 50 H 1.08998 * 117.49782 * 359.97438 * 29 27 10 51 51 H 1.08997 * 117.49787 * 145.00273 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3882 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9685 -3.5508 -0.5889 12 6 1.1806 -4.7521 -0.6091 13 7 0.7340 -4.3355 -1.9406 14 6 -0.0559 -5.1473 -2.6712 15 8 -0.3226 -6.2590 -2.2663 16 6 -0.6076 -4.6737 -3.9912 17 6 0.5166 -4.4493 -4.9695 18 6 1.8180 -4.7914 -4.6342 19 6 2.8193 -4.5712 -5.5672 20 6 2.4911 -4.0129 -6.7883 21 7 1.2430 -3.6953 -7.0711 22 6 0.2643 -3.8952 -6.2099 23 6 -1.4032 -3.3716 -3.7931 24 6 -2.8492 -3.6661 -4.2424 25 6 -2.9867 -5.2020 -4.0974 26 6 -1.5980 -5.7140 -4.5537 27 6 2.4216 -4.0357 1.4376 28 6 3.8818 -4.3893 1.7268 29 6 3.3025 -3.0622 2.2233 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 1.7554 -5.6747 -0.6908 33 1 0.3130 -4.9200 0.0291 34 1 1.0068 -3.4755 -2.2967 35 1 2.0453 -5.2227 -3.6705 36 1 3.8433 -4.8297 -5.3415 37 1 3.2658 -3.8351 -7.5194 38 1 -0.7457 -3.6218 -6.4770 39 1 -1.3906 -3.0824 -2.7422 40 1 -0.9767 -2.5767 -4.4050 41 1 -2.9949 -3.3663 -5.2802 42 1 -3.5615 -3.1564 -3.5936 43 1 -3.7724 -5.5828 -4.7500 44 1 -3.1792 -5.4793 -3.0610 45 1 -1.5415 -5.7450 -5.6419 46 1 -1.3956 -6.6993 -4.1340 47 1 1.6537 -4.5775 1.9897 48 1 4.0746 -5.1638 2.4693 49 1 4.5834 -4.3517 0.8935 50 1 3.6232 -2.1522 1.7163 51 1 3.1141 -2.9637 3.2923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713117708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:32 Heat of formation + Delta-G solvation = 10.211348 kcal Electronic energy + Delta-G solvation = -31310.205557 eV Core-core repulsion = 27402.257626 eV Total energy + Delta-G solvation = -3907.947931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.21499 -40.47407 -39.18987 -38.11589 -36.13987 -35.21382 -33.87989 -32.72172 -32.51577 -30.12237 -29.59729 -28.83084 -25.76756 -24.89961 -24.06925 -23.84142 -23.03694 -22.40215 -21.57692 -21.28462 -20.24349 -19.22728 -18.58698 -17.98517 -17.24525 -16.84958 -16.82470 -16.59254 -16.16512 -15.91997 -15.87951 -15.49216 -15.18071 -14.93303 -14.89209 -14.69938 -14.36186 -14.18354 -13.94927 -13.67097 -13.37944 -12.97141 -12.94006 -12.72144 -12.64723 -12.45746 -12.40627 -12.26301 -12.06882 -12.03351 -11.99178 -11.87629 -11.73145 -11.50549 -11.07977 -11.00013 -10.84833 -10.77980 -10.75234 -10.34769 -10.02270 -9.88301 -8.98889 -7.88230 -5.15109 0.11638 0.28191 1.48613 1.49493 1.54370 1.54764 2.19353 2.57303 2.79945 3.07043 3.35250 3.42166 3.49515 3.63081 3.66649 3.77543 3.89438 3.95123 3.99569 4.02471 4.15512 4.16519 4.30010 4.34136 4.38559 4.46420 4.48596 4.56089 4.57219 4.61124 4.65833 4.74657 4.81439 4.84950 4.89251 4.96139 5.05014 5.10353 5.13737 5.15181 5.17103 5.21298 5.26470 5.29888 5.39399 5.45215 5.45815 5.52103 5.61453 5.73056 6.31150 6.53066 6.98711 7.17472 7.39980 8.10601 8.36272 9.34055 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.003945 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.005202 B = 7095.988275 C = 7556.426493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.283 1.283 7 C -0.218 4.218 8 H 0.075 0.925 9 N -0.721 5.721 10 C 0.198 3.802 11 H 0.056 0.944 12 C 0.127 3.873 13 N -0.709 5.709 14 C 0.526 3.474 15 O -0.573 6.573 16 C -0.029 4.029 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.163 4.163 20 C 0.088 3.912 21 N -0.501 5.501 22 C 0.105 3.895 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.100 4.100 27 C -0.173 4.173 28 C -0.162 4.162 29 C -0.174 4.174 30 H 0.247 0.753 31 H 0.373 0.627 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.408 0.592 35 H 0.127 0.873 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -11.418 -10.799 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.207 1.207 5 H -0.229 1.229 6 H -0.210 1.210 7 C -0.350 4.350 8 H 0.092 0.908 9 N -0.360 5.360 10 C 0.089 3.911 11 H 0.074 0.926 12 C 0.002 3.998 13 N -0.359 5.359 14 C 0.313 3.687 15 O -0.453 6.453 16 C -0.033 4.033 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.182 4.182 20 C -0.069 4.069 21 N -0.209 5.209 22 C -0.052 4.052 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.138 4.138 27 C -0.194 4.194 28 C -0.199 4.199 29 C -0.211 4.211 30 H 0.056 0.944 31 H 0.205 0.795 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.244 0.756 35 H 0.144 0.856 36 H 0.178 0.822 37 H 0.200 0.800 38 H 0.188 0.812 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.111 0.889 48 H 0.124 0.876 49 H 0.114 0.886 50 H 0.098 0.902 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.848 -11.683 -11.320 16.373 hybrid contribution 0.315 1.298 1.464 1.982 sum 2.163 -10.386 -9.856 14.481 Atomic orbital electron populations 1.69780 1.06213 1.25561 1.59787 1.25293 0.96025 1.00127 1.04421 0.85497 0.77331 0.80724 0.77905 1.20737 1.22932 1.20988 1.19361 0.90992 0.84616 1.40009 0.90764 1.42507 1.05233 1.00252 1.88022 1.20125 0.94004 0.84764 0.92178 0.92616 1.21497 0.98015 0.97497 0.82781 1.46051 1.50361 1.21853 1.17653 1.20588 0.77388 0.84317 0.86419 1.90627 1.60482 1.21255 1.72977 1.20317 0.94601 0.98389 0.90003 1.20552 0.94178 1.01201 0.96583 1.21805 0.92832 0.96995 0.99990 1.22405 1.01342 0.99980 0.94472 1.23272 0.93739 0.93773 0.96081 1.67768 1.01506 1.17080 1.34561 1.22748 0.99378 0.94379 0.88685 1.22320 0.96449 0.94446 1.01885 1.22386 0.94401 0.96068 1.02651 1.22477 0.96716 0.95269 1.01197 1.22419 0.93038 0.97295 1.01020 1.22925 0.93936 1.03850 0.98694 1.23030 0.95141 0.98269 1.03468 1.22722 1.04842 0.94288 0.99247 0.94413 0.79518 0.90158 0.93091 0.75609 0.85554 0.82250 0.79987 0.81203 0.92883 0.90372 0.88977 0.91334 0.88797 0.93105 0.89100 0.91165 0.88895 0.87573 0.88582 0.90153 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.43 13.06 21.65 0.28 -55.14 16 2 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.95 44.15 29.55 68.60 2.03 46.18 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.22 -10.82 8.63 84.04 0.73 -10.09 16 8 H 0.07 3.58 6.91 -2.91 -0.02 3.56 16 9 N -0.72 -32.02 4.54 -322.95 -1.47 -33.49 16 10 C 0.20 6.95 2.70 44.99 0.12 7.07 16 11 H 0.06 1.95 7.84 -2.39 -0.02 1.93 16 12 C 0.13 4.09 5.22 86.38 0.45 4.54 16 13 N -0.71 -22.72 3.91 -463.06 -1.81 -24.53 16 14 C 0.53 16.77 4.90 87.65 0.43 17.20 16 15 O -0.57 -21.25 15.38 -3.04 -0.05 -21.29 16 16 C -0.03 -0.77 0.62 -52.95 -0.03 -0.80 16 17 C -0.12 -3.06 4.65 -19.77 -0.09 -3.15 16 18 C -0.09 -2.23 8.86 22.47 0.20 -2.03 16 19 C -0.16 -3.33 10.11 22.36 0.23 -3.10 16 20 C 0.09 1.80 11.18 84.69 0.95 2.74 16 21 N -0.50 -12.19 10.36 -195.85 -2.03 -14.22 16 22 C 0.10 2.45 9.25 84.67 0.78 3.23 16 23 C -0.11 -2.99 5.56 31.32 0.17 -2.82 16 24 C -0.12 -2.48 6.83 31.67 0.22 -2.26 16 25 C -0.12 -2.52 6.91 31.88 0.22 -2.30 16 26 C -0.10 -2.32 5.68 31.67 0.18 -2.14 16 27 C -0.17 -5.60 5.36 -10.79 -0.06 -5.66 16 28 C -0.16 -4.29 10.18 30.62 0.31 -3.98 16 29 C -0.17 -5.80 9.78 30.62 0.30 -5.50 16 30 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.37 18.49 7.80 -92.71 -0.72 17.77 16 32 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.41 13.86 7.83 -92.71 -0.73 13.14 16 35 H 0.13 3.32 6.07 -2.91 -0.02 3.30 16 36 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.17 3.27 7.85 -2.91 -0.02 3.25 16 39 H 0.05 1.73 7.47 -2.39 -0.02 1.71 16 40 H 0.08 2.03 7.04 -2.39 -0.02 2.01 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.75 7.35 -2.38 -0.02 1.73 16 46 H 0.07 1.91 6.77 -2.39 -0.02 1.89 16 47 H 0.09 2.98 8.11 -2.39 -0.02 2.96 16 48 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 49 H 0.10 2.39 8.05 -2.39 -0.02 2.38 16 50 H 0.08 3.08 6.23 -2.39 -0.01 3.07 16 51 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -62.59 404.93 2.02 -60.57 By element: Atomic # 1 Polarization: 54.56 SS G_CDS: -0.50 Total: 54.05 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.57 Total: -12.12 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.02 Total: -127.39 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.59 2.02 -60.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713117708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.776 kcal (2) G-P(sol) polarization free energy of solvation -62.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds